Wall clock time and date at job start Tue Mar 31 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48505 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46932 * 299.99338 * 3 2 1 6 6 H 1.48495 * 109.47460 * 59.99770 * 3 2 1 7 7 C 1.37878 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46935 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54354 * 68.37588 * 11 10 9 13 13 O 1.42101 * 110.54189 * 291.62381 * 11 10 9 14 14 N 1.65606 * 104.44655 * 179.97438 * 11 10 9 15 15 C 1.46503 * 119.99730 * 65.00197 * 14 11 10 16 16 H 1.08994 * 110.34645 * 337.12146 * 15 14 11 17 17 C 1.54340 * 110.29731 * 214.99735 * 15 14 11 18 18 C 1.54347 * 102.39927 * 267.43008 * 17 15 14 19 19 C 1.51370 * 105.25432 * 333.59962 * 18 17 15 20 20 C 1.38493 * 109.62676 * 17.23466 * 19 18 17 21 21 C 1.38469 * 119.84223 * 179.97438 * 20 19 18 22 22 C 1.38141 * 120.25813 * 359.94392 * 21 20 19 23 23 C 1.38296 * 119.93545 * 0.02599 * 22 21 20 24 24 Cl 1.73608 * 120.05189 * 179.97438 * 23 22 21 25 25 C 1.38354 * 130.55149 * 197.12863 * 19 18 17 26 26 Cl 1.73598 * 119.83908 * 0.08692 * 25 19 18 27 27 H 0.96996 * 119.99499 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47126 * 59.99993 * 9 7 2 29 29 H 1.09002 * 109.47291 * 299.99746 * 9 7 2 30 30 H 1.08997 * 109.47071 * 60.00141 * 10 9 7 31 31 H 1.09002 * 109.47072 * 300.00062 * 10 9 7 32 32 H 0.96998 * 119.99873 * 244.99572 * 14 11 10 33 33 H 1.09005 * 110.81891 * 149.20700 * 17 15 14 34 34 H 1.08993 * 110.82844 * 25.66042 * 17 15 14 35 35 H 1.09002 * 110.30226 * 92.57403 * 18 17 15 36 36 H 1.08997 * 110.30441 * 214.62963 * 18 17 15 37 37 H 1.07999 * 119.87096 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.03212 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.4197 -6.5228 1.1498 16 1 3.4619 -5.5863 1.7059 17 6 4.8323 -6.9312 0.6809 18 6 4.7803 -8.4709 0.7746 19 6 3.7437 -8.7706 1.8362 20 6 2.9604 -7.6488 2.0512 21 6 1.9393 -7.6902 2.9855 22 6 1.6984 -8.8460 3.7027 23 6 2.4797 -9.9668 3.4881 24 17 2.1801 -11.4207 4.3883 25 6 3.5009 -9.9274 2.5552 26 17 4.4819 -11.3340 2.2855 27 1 -0.4849 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 2.6176 -6.9858 -0.7608 33 1 5.5938 -6.5279 1.3484 34 1 5.0073 -6.6113 -0.3463 35 1 4.4772 -8.8981 -0.1813 36 1 5.7519 -8.8647 1.0731 37 1 1.3285 -6.8156 3.1539 38 1 0.9008 -8.8743 4.4303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079097926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:39 Heat of formation + Delta-G solvation = -96.096784 kcal Electronic energy + Delta-G solvation = -25391.404277 eV Core-core repulsion = 21410.945387 eV Total energy + Delta-G solvation = -3980.458890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 363.025 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45868 -38.40844 -38.05724 -37.55458 -36.96060 -36.84721 -35.86173 -34.15534 -33.09293 -31.66719 -29.98366 -27.57885 -27.48961 -23.94495 -23.57717 -22.36845 -21.94327 -20.38072 -19.12022 -18.45701 -18.14469 -17.14776 -17.04986 -17.01850 -16.53079 -16.46204 -16.24381 -15.50829 -15.14291 -14.98033 -14.74148 -14.60040 -14.44677 -13.69200 -13.52926 -13.27938 -13.13791 -13.07880 -13.04239 -12.93472 -12.86789 -12.74258 -12.56742 -12.44335 -12.26952 -12.14114 -12.06062 -11.94699 -11.86310 -11.78220 -11.68407 -11.16195 -10.63295 -10.51524 -9.77452 -9.69989 -8.23959 -6.37278 -0.68621 -0.14030 0.03206 0.76400 1.15307 1.43263 1.43465 1.56499 1.84284 2.39284 2.40832 2.84006 3.10242 3.20960 3.31483 3.40918 3.80613 3.93947 3.98742 4.03578 4.17484 4.22339 4.24637 4.35656 4.51003 4.67973 4.79140 4.85242 4.86190 5.02070 5.06114 5.20295 5.28832 5.31577 5.33437 5.39760 5.55595 5.71725 6.08737 6.12046 6.77541 7.33157 8.88445 Molecular weight = 363.02amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002342 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.686798 B =11952.346837 C =12331.989266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.019 3.981 10 C -0.586 4.586 11 S 2.614 3.386 12 O -1.002 7.002 13 O -0.987 6.987 14 N -1.095 6.095 15 C 0.180 3.820 16 H 0.112 0.888 17 C -0.116 4.116 18 C -0.081 4.081 19 C -0.065 4.065 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.109 4.109 23 C -0.034 4.034 24 Cl -0.049 7.049 25 C -0.038 4.038 26 Cl -0.050 7.050 27 H 0.266 0.734 28 H 0.003 0.997 29 H 0.008 0.992 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.426 0.574 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.695 -21.248 5.140 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.097 0.903 9 C -0.020 4.020 10 C -0.719 4.719 11 S 2.711 3.289 12 O -0.993 6.993 13 O -0.977 6.977 14 N -0.855 5.855 15 C 0.073 3.927 16 H 0.130 0.870 17 C -0.155 4.155 18 C -0.118 4.118 19 C -0.067 4.067 20 C -0.112 4.112 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.062 4.062 24 Cl -0.020 7.020 25 C -0.065 4.065 26 Cl -0.021 7.021 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.159 0.841 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.650 -21.486 5.331 25.497 hybrid contribution 0.052 0.621 -0.063 0.626 sum 12.703 -20.865 5.267 24.989 Atomic orbital electron populations 1.70110 1.08090 1.28163 1.51188 1.26104 0.95801 1.03857 0.94568 0.85301 0.79352 0.78203 0.77623 1.17659 1.20666 1.20578 1.21569 0.94088 0.90692 1.50988 0.90324 1.18821 0.93672 0.93147 0.96323 1.30338 1.12745 1.16032 1.12745 1.04684 0.74749 0.76584 0.72892 1.93509 1.73025 1.85873 1.46865 1.93494 1.72428 1.85263 1.46477 1.55434 1.52066 1.50486 1.27475 1.20442 0.90576 0.97373 0.84307 0.86975 1.22743 0.93475 0.94077 1.05199 1.21244 0.97183 0.97126 0.96252 1.20647 0.98568 0.90541 0.96934 1.21222 0.95977 0.97013 0.97023 1.21145 0.96278 0.98611 0.93997 1.21149 0.99927 0.90541 1.01185 1.20791 0.98020 0.90204 0.97139 1.98382 1.95246 1.35124 1.73211 1.20313 0.96218 0.90025 0.99985 1.98372 1.68886 1.39179 1.95638 0.92509 0.97859 0.97358 0.83498 0.83618 0.73719 0.87166 0.86758 0.88213 0.88193 0.84077 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.81 13.29 21.45 0.28 -55.52 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 42.00 29.54 68.60 2.03 44.02 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.53 -28.28 9.11 25.60 0.23 -28.04 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.02 0.95 4.98 29.85 0.15 1.10 16 10 C -0.59 -19.65 5.92 71.98 0.43 -19.23 16 11 S 2.61 83.39 5.38 -56.49 -0.30 83.09 16 12 O -1.00 -39.63 18.08 -127.65 -2.31 -41.94 16 13 O -0.99 -36.50 16.59 -127.65 -2.12 -38.61 16 14 N -1.10 -22.42 5.38 -169.71 -0.91 -23.33 16 15 C 0.18 3.08 3.30 44.91 0.15 3.23 16 16 H 0.11 1.75 7.26 -2.39 -0.02 1.73 16 17 C -0.12 -1.14 6.72 31.51 0.21 -0.93 16 18 C -0.08 -0.93 6.47 30.52 0.20 -0.73 16 19 C -0.07 -1.17 6.05 -19.56 -0.12 -1.29 16 20 C -0.11 -2.25 5.77 -19.53 -0.11 -2.37 16 21 C -0.08 -1.89 9.85 22.30 0.22 -1.67 16 22 C -0.11 -2.29 9.83 22.26 0.22 -2.07 16 23 C -0.03 -0.70 6.32 22.32 0.14 -0.56 16 24 Cl -0.05 -0.94 27.96 -2.72 -0.08 -1.01 16 25 C -0.04 -0.75 6.32 22.33 0.14 -0.61 16 26 Cl -0.05 -0.88 27.71 -2.72 -0.08 -0.96 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.08 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.15 4.04 7.51 -2.39 -0.02 4.02 16 31 H 0.15 4.18 8.14 -2.39 -0.02 4.16 16 32 H 0.43 6.95 8.83 -96.75 -0.85 6.10 16 33 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.11 0.76 8.08 -2.39 -0.02 0.74 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.14 3.62 7.01 -2.91 -0.02 3.60 16 38 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -74.19 362.98 -0.91 -75.10 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.26 Total: 12.15 kcal Atomic # 6 Polarization: -55.30 SS G_CDS: 2.32 Total: -52.98 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -0.63 Total: -78.86 kcal Atomic # 8 Polarization: -76.12 SS G_CDS: -4.43 Total: -80.55 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 83.39 SS G_CDS: -0.30 Total: 83.09 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.15 Total: -1.97 kcal Total: -74.19 -0.91 -75.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079097926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.998 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds