Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99694 * 2 1 4 4 H 1.48501 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47597 * 300.00061 * 3 2 1 6 6 H 1.48498 * 109.47036 * 60.00415 * 3 2 1 7 7 C 1.37878 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46843 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46943 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54505 * 73.00259 * 11 10 9 13 13 O 1.42103 * 110.54212 * 296.24770 * 11 10 9 14 14 N 1.65600 * 104.45067 * 184.62692 * 11 10 9 15 15 C 1.46500 * 120.00056 * 64.79140 * 14 11 10 16 16 H 1.09002 * 110.27046 * 338.11124 * 15 14 11 17 17 C 1.54601 * 110.30254 * 100.26216 * 15 14 11 18 18 C 1.54350 * 102.27934 * 92.57281 * 17 15 14 19 19 C 1.51372 * 105.25234 * 26.36996 * 18 17 15 20 20 C 1.38248 * 109.76046 * 342.76402 * 19 18 17 21 21 C 1.38469 * 119.87870 * 180.02562 * 20 19 18 22 22 C 1.38137 * 120.26122 * 359.97302 * 21 20 19 23 23 C 1.38297 * 119.93288 * 0.02845 * 22 21 20 24 24 Cl 1.73596 * 120.05315 * 179.97438 * 23 22 21 25 25 C 1.38376 * 119.89437 * 359.97438 * 23 22 21 26 26 Cl 1.73603 * 119.91168 * 180.02562 * 25 23 22 27 27 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47267 * 60.00028 * 9 7 2 29 29 H 1.08997 * 109.46780 * 300.00262 * 9 7 2 30 30 H 1.09002 * 109.47322 * 59.99871 * 10 9 7 31 31 H 1.09004 * 109.46938 * 300.00034 * 10 9 7 32 32 H 0.96998 * 120.00434 * 244.79963 * 14 11 10 33 33 H 1.09001 * 110.90785 * 334.37261 * 17 15 14 34 34 H 1.09008 * 110.85048 * 210.73927 * 17 15 14 35 35 H 1.08996 * 110.29941 * 267.40529 * 18 17 15 36 36 H 1.08991 * 110.30553 * 145.34171 * 18 17 15 37 37 H 1.07997 * 119.86872 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.03081 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3384 -5.2330 0.0002 12 8 0.7518 -5.4707 -1.2719 13 8 0.5798 -5.3702 1.1940 14 7 2.5161 -6.3900 0.1295 15 6 3.3352 -6.4692 1.3415 16 1 3.3261 -5.5140 1.8666 17 6 2.8186 -7.5959 2.2655 18 6 3.6743 -8.8018 1.8228 19 6 4.9492 -8.2032 1.2681 20 6 4.7544 -6.8627 0.9916 21 6 5.7923 -6.1077 0.4719 22 6 7.0220 -6.6885 0.2291 23 6 7.2184 -8.0293 0.5052 24 17 8.7622 -8.7625 0.2007 25 6 6.1825 -8.7855 1.0245 26 17 6.4288 -10.4685 1.3718 27 1 -0.4850 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 2.6637 -7.0152 -0.5972 33 1 1.7598 -7.7872 2.0910 34 1 3.0024 -7.3540 3.3124 35 1 3.1560 -9.3700 1.0504 36 1 3.8971 -9.4413 2.6768 37 1 5.6399 -5.0607 0.2555 38 1 7.8287 -6.0962 -0.1766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079097930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -73.910761 kcal Electronic energy + Delta-G solvation = -25335.267589 eV Core-core repulsion = 21355.770757 eV Total energy + Delta-G solvation = -3979.496832 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 363.025 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79682 -37.66155 -36.86499 -36.66735 -36.09098 -35.50583 -33.95557 -33.35971 -31.23232 -30.95942 -29.32530 -26.75835 -25.66804 -23.28894 -21.76113 -21.67793 -21.23991 -19.06498 -17.81016 -17.44144 -16.65196 -16.46182 -16.27097 -15.65605 -15.45151 -15.22983 -14.64424 -14.54008 -14.27004 -14.06802 -13.84741 -13.44991 -12.68740 -12.64145 -12.51047 -12.22747 -12.17919 -11.92079 -11.82614 -11.78941 -11.66891 -11.58894 -11.48916 -11.28509 -11.19860 -11.13234 -11.04977 -10.99298 -10.46526 -10.44510 -9.93613 -9.61545 -9.13021 -9.10804 -9.02259 -8.55251 -6.17159 -4.23021 0.44247 0.66989 0.76294 1.46346 1.85201 2.84952 3.21358 3.21994 3.29632 3.32311 3.86002 3.96850 4.18343 4.33418 4.55913 4.59255 4.61879 4.66643 4.79971 4.87514 5.01421 5.13596 5.18358 5.33871 5.46687 5.51236 5.55295 5.58539 5.65831 5.72364 5.89186 5.95164 6.05923 6.17236 6.40505 6.95077 7.24343 7.30342 7.75679 8.11895 8.80619 9.42223 10.93861 Molecular weight = 363.02amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002621 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.544044 B =10680.872199 C =12191.947240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.591 4.591 11 S 2.589 3.411 12 O -0.965 6.965 13 O -0.960 6.960 14 N -1.116 6.116 15 C 0.194 3.806 16 H 0.105 0.895 17 C -0.132 4.132 18 C -0.082 4.082 19 C -0.062 4.062 20 C -0.091 4.091 21 C -0.072 4.072 22 C -0.103 4.103 23 C -0.024 4.024 24 Cl -0.049 7.049 25 C -0.025 4.025 26 Cl -0.052 7.052 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.414 0.586 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.850 -19.217 3.302 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.687 3.313 12 O -0.956 6.956 13 O -0.950 6.950 14 N -0.871 5.871 15 C 0.086 3.914 16 H 0.123 0.877 17 C -0.171 4.171 18 C -0.119 4.119 19 C -0.064 4.064 20 C -0.094 4.094 21 C -0.091 4.091 22 C -0.122 4.122 23 C -0.052 4.052 24 Cl -0.020 7.020 25 C -0.053 4.053 26 Cl -0.023 7.023 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.247 0.753 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.856 -19.411 3.402 24.090 hybrid contribution 1.479 0.788 -0.398 1.723 sum 15.335 -18.623 3.004 24.310 Atomic orbital electron populations 1.69958 1.06123 1.27154 1.49521 1.25068 0.94966 0.99568 0.94870 0.86424 0.79917 0.83197 0.77805 1.19635 1.20790 1.20782 1.21025 0.93068 0.89724 1.52198 0.91983 1.18969 0.92664 0.90514 0.98960 1.30472 1.13789 1.18092 1.10044 1.05739 0.74770 0.76582 0.74233 1.93564 1.74809 1.84553 1.42641 1.93560 1.67529 1.85476 1.48438 1.55983 1.55084 1.50556 1.25479 1.20114 0.85046 1.00755 0.85493 0.87724 1.22870 1.01203 0.93383 0.99680 1.21153 0.90964 0.98558 1.01230 1.20413 0.93363 0.94648 0.97977 1.20757 0.95783 0.93518 0.99292 1.20856 0.90966 1.00988 0.96296 1.20980 0.98439 0.92110 1.00625 1.20675 0.87482 0.93694 1.03363 1.98394 1.26624 1.82829 1.94171 1.20257 0.93592 0.86588 1.04843 1.98384 1.96884 1.13677 1.93390 0.92535 0.94966 0.94616 0.86378 0.85984 0.75293 0.88400 0.89325 0.89172 0.89666 0.83803 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.83 9.11 -34.44 -0.31 -14.15 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.30 5.94 37.16 0.22 -10.08 16 11 S 2.59 42.15 5.38 -107.50 -0.58 41.58 16 12 O -0.97 -18.84 18.08 -57.54 -1.04 -19.88 16 13 O -0.96 -18.18 17.82 -57.54 -1.03 -19.20 16 14 N -1.12 -12.75 5.39 -4.87 -0.03 -12.78 16 15 C 0.19 1.95 3.31 -67.91 -0.22 1.72 16 16 H 0.10 0.99 7.17 -51.93 -0.37 0.62 16 17 C -0.13 -1.20 6.80 -25.18 -0.17 -1.37 16 18 C -0.08 -0.67 6.46 -26.85 -0.17 -0.84 16 19 C -0.06 -0.58 6.05 -104.18 -0.63 -1.21 16 20 C -0.09 -0.85 5.71 -104.20 -0.59 -1.45 16 21 C -0.07 -0.62 10.04 -39.53 -0.40 -1.02 16 22 C -0.10 -0.86 9.83 -39.60 -0.39 -1.24 16 23 C -0.02 -0.23 6.32 -39.51 -0.25 -0.48 16 24 Cl -0.05 -0.44 27.96 -51.86 -1.45 -1.89 16 25 C -0.03 -0.24 6.32 -39.42 -0.25 -0.49 16 26 Cl -0.05 -0.48 27.71 -51.86 -1.44 -1.92 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.76 7.39 -51.92 -0.38 1.38 16 31 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 32 H 0.41 4.09 8.83 -34.47 -0.30 3.79 16 33 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -33.57 365.29 -12.15 -45.72 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.40 Total: 0.95 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -3.41 Total: -28.57 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.71 Total: -37.90 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -2.07 Total: -39.09 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 42.15 SS G_CDS: -0.58 Total: 41.58 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -2.89 Total: -3.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.57 -12.15 -45.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079097930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.195 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds