Wall clock time and date at job start Tue Mar 31 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47007 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54866 * 291.62907 * 11 10 9 13 13 O 1.42107 * 110.53812 * 68.37457 * 11 10 9 14 14 N 1.65591 * 104.45014 * 179.97438 * 11 10 9 15 15 C 1.47236 * 121.33771 * 90.00574 * 14 11 10 16 16 C 1.52780 * 107.91315 * 115.75168 * 15 14 11 17 17 C 1.50603 * 110.86816 * 47.45905 * 16 15 14 18 18 C 1.38967 * 117.60769 * 159.95838 * 17 16 15 19 19 C 1.38029 * 120.60068 * 179.52348 * 18 17 16 20 20 Cl 1.73600 * 120.09519 * 179.88725 * 19 18 17 21 21 C 1.38362 * 119.81710 * 359.91375 * 19 18 17 22 22 C 1.38060 * 119.68692 * 0.24922 * 21 19 18 23 23 Cl 1.73592 * 119.75494 * 180.02562 * 22 21 19 24 24 C 1.37667 * 122.85439 * 339.85036 * 17 16 15 25 25 C 1.46688 * 121.34206 * 269.71584 * 14 11 10 26 26 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 1.09000 * 109.76729 * 235.35353 * 15 14 11 32 32 H 1.08999 * 109.77460 * 356.14170 * 15 14 11 33 33 H 1.09002 * 109.20137 * 167.81902 * 16 15 14 34 34 H 1.09005 * 109.19868 * 287.14803 * 16 15 14 35 35 H 1.07997 * 119.70136 * 359.50521 * 18 17 16 36 36 H 1.07995 * 120.16119 * 180.26885 * 21 19 18 37 37 H 1.08998 * 109.43684 * 344.51317 * 25 14 11 38 38 H 1.09001 * 109.43067 * 104.38232 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3385 -5.2331 0.0013 12 8 0.6648 -5.4194 1.2385 13 8 0.6641 -5.4200 -1.2355 14 7 2.5207 -6.3926 0.0005 15 6 3.0681 -6.9288 1.2577 16 6 2.7109 -8.4125 1.3308 17 6 3.0263 -9.1049 0.0311 18 6 3.1677 -10.4871 0.0556 19 6 3.4471 -11.1855 -1.1018 20 17 3.6240 -12.9118 -1.0556 21 6 3.5863 -10.5057 -2.2988 22 6 3.4496 -9.1321 -2.3250 23 17 3.6232 -8.2776 -3.8260 24 6 3.1744 -8.4285 -1.1587 25 6 3.0601 -6.9314 -1.2527 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8721 -3.6042 -0.8894 30 1 2.8721 -3.6043 0.8905 31 1 4.1515 -6.8095 1.2686 32 1 2.6299 -6.4018 2.1052 33 1 3.2816 -8.8795 2.1335 34 1 1.6463 -8.5149 1.5416 35 1 3.0583 -11.0198 0.9887 36 1 3.8006 -11.0470 -3.2084 37 1 2.3952 -6.6700 -2.0758 38 1 4.0469 -6.5060 -1.4352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084021477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:37 Heat of formation + Delta-G solvation = -68.886140 kcal Electronic energy + Delta-G solvation = -25453.654919 eV Core-core repulsion = 21474.375971 eV Total energy + Delta-G solvation = -3979.278948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 363.025 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51087 -37.47491 -37.06788 -36.74468 -36.19755 -35.50359 -33.92837 -33.01374 -31.43892 -31.19225 -29.67309 -25.74352 -25.35445 -24.18869 -22.81796 -21.67399 -20.73857 -18.49071 -17.83780 -17.32272 -16.72011 -16.32070 -16.18812 -15.52959 -15.43318 -15.10470 -14.70440 -14.57344 -14.39689 -14.07371 -13.67351 -13.45154 -12.96359 -12.89394 -12.68317 -12.53430 -12.42733 -12.16877 -11.88784 -11.80283 -11.67313 -11.46818 -11.41943 -11.19961 -11.10949 -11.09500 -11.00074 -10.92126 -10.46333 -10.42071 -9.83410 -9.45418 -9.11892 -9.00819 -8.85495 -8.53201 -6.15324 -4.21156 0.56065 0.63761 0.68016 1.46619 1.92511 2.85671 2.99126 3.24241 3.30648 3.33094 4.11103 4.20021 4.23298 4.35151 4.48801 4.53796 4.60304 4.71121 4.85284 4.99853 5.07647 5.19015 5.19857 5.28057 5.37037 5.46394 5.54749 5.56970 5.60718 5.69066 5.73190 5.84461 6.12665 6.18362 6.43205 6.43595 7.25716 7.31436 7.77532 8.13805 8.82235 9.43834 10.95688 Molecular weight = 363.02amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.002408 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.869029 B =11626.861991 C =12370.781581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.586 4.586 11 S 2.589 3.411 12 O -0.959 6.959 13 O -0.960 6.960 14 N -1.009 6.009 15 C 0.120 3.880 16 C -0.097 4.097 17 C -0.040 4.040 18 C -0.107 4.107 19 C -0.026 4.026 20 Cl -0.061 7.061 21 C -0.105 4.105 22 C -0.022 4.022 23 Cl -0.049 7.049 24 C -0.070 4.070 25 C 0.153 3.847 26 H 0.265 0.735 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -23.422 -1.005 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.688 3.312 12 O -0.950 6.950 13 O -0.950 6.950 14 N -0.844 5.844 15 C -0.005 4.005 16 C -0.136 4.136 17 C -0.041 4.041 18 C -0.125 4.125 19 C -0.053 4.053 20 Cl -0.032 7.032 21 C -0.124 4.124 22 C -0.049 4.049 23 Cl -0.020 7.020 24 C -0.073 4.073 25 C 0.028 3.972 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.458 -23.582 -1.127 25.433 hybrid contribution 1.099 0.978 -0.258 1.494 sum 10.557 -22.603 -1.384 24.986 Atomic orbital electron populations 1.69953 1.06117 1.27254 1.49484 1.25073 0.94984 0.99570 0.94875 0.86463 0.79696 0.82820 0.78266 1.20441 1.20988 1.19753 1.20988 0.93061 0.89692 1.52248 0.92011 1.18979 0.92693 0.90549 0.98915 1.30486 1.13672 1.17636 1.10218 1.05838 0.74676 0.76407 0.74249 1.93537 1.70912 1.85235 1.45278 1.93540 1.71042 1.85130 1.45291 1.58141 1.59318 1.56108 1.10816 1.21400 0.99608 0.93277 0.86265 1.20882 1.03587 0.95719 0.93386 1.19406 0.97543 0.92391 0.94799 1.21187 1.00112 0.93474 0.97772 1.20596 1.04664 0.85240 0.94754 1.98386 1.96056 1.10004 1.98780 1.20791 1.01584 0.92072 0.97974 1.20675 1.04510 0.91968 0.87765 1.98405 1.95750 1.76907 1.30921 1.19683 0.99527 0.96686 0.91361 1.20252 1.01123 0.88484 0.87387 0.92489 0.94819 0.94818 0.86097 0.86101 0.90498 0.87840 0.88886 0.88949 0.84195 0.83715 0.86740 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.77 6.12 37.16 0.23 -10.54 16 11 S 2.59 44.87 5.47 -107.50 -0.59 44.28 16 12 O -0.96 -18.77 16.77 -57.54 -0.96 -19.73 16 13 O -0.96 -19.37 16.62 -57.54 -0.96 -20.33 16 14 N -1.01 -12.97 3.19 -115.23 -0.37 -13.34 16 15 C 0.12 1.19 6.35 -3.75 -0.02 1.17 16 16 C -0.10 -0.85 5.87 -28.04 -0.16 -1.02 16 17 C -0.04 -0.40 5.76 -104.61 -0.60 -1.00 16 18 C -0.11 -0.92 9.37 -39.39 -0.37 -1.29 16 19 C -0.03 -0.23 6.31 -39.61 -0.25 -0.48 16 20 Cl -0.06 -0.49 28.96 -51.86 -1.50 -1.99 16 21 C -0.10 -0.96 9.61 -39.60 -0.38 -1.34 16 22 C -0.02 -0.22 6.31 -39.38 -0.25 -0.47 16 23 Cl -0.05 -0.50 27.44 -51.86 -1.42 -1.92 16 24 C -0.07 -0.77 5.81 -104.69 -0.61 -1.38 16 25 C 0.15 1.81 5.42 -5.22 -0.03 1.78 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 30 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.03 7.13 -51.93 -0.37 0.66 16 33 H 0.09 0.55 8.10 -51.93 -0.42 0.12 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.14 0.92 8.05 -52.49 -0.42 0.49 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.11 1.50 6.29 -51.93 -0.33 1.18 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -33.48 359.75 -12.13 -45.60 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.46 Total: -1.52 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -3.00 Total: -26.94 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.37 Total: -38.78 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.92 Total: -40.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 44.87 SS G_CDS: -0.59 Total: 44.28 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -2.92 Total: -3.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.48 -12.13 -45.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084021477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.282 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds