Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48494 * 109.47088 * 275.31369 * 3 2 1 5 5 H 1.48501 * 109.47273 * 35.31725 * 3 2 1 6 6 H 1.48506 * 109.46917 * 155.31332 * 3 2 1 7 7 C 1.37870 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00846 * 348.75513 * 7 2 1 9 9 C 1.50707 * 119.99610 * 168.75299 * 7 2 1 10 10 C 1.52993 * 115.54895 * 323.30026 * 9 7 2 11 11 O 1.45202 * 109.47177 * 184.78449 * 10 9 7 12 12 C 1.34888 * 117.00447 * 181.67991 * 11 10 9 13 13 O 1.21647 * 119.99930 * 5.65193 * 12 11 10 14 14 C 1.46381 * 120.00349 * 185.65067 * 12 11 10 15 15 C 1.40745 * 126.54972 * 353.65512 * 14 12 11 16 16 N 1.30656 * 108.71534 * 179.97438 * 15 14 12 17 17 N 1.39871 * 109.54441 * 0.02562 * 16 15 14 18 18 C 1.36579 * 108.17886 * 359.97438 * 17 16 15 19 19 N 1.33282 * 120.96708 * 180.02562 * 18 17 16 20 20 C 1.31635 * 121.30926 * 0.02562 * 19 18 17 21 21 C 1.39482 * 120.24597 * 0.02562 * 20 19 18 22 22 C 1.37177 * 132.18401 * 180.02562 * 17 16 15 23 23 C 1.47724 * 120.61861 * 359.97438 * 22 17 16 24 24 C 1.39629 * 120.14723 * 4.72577 * 23 22 17 25 25 C 1.37944 * 119.84641 * 179.72049 * 24 23 22 26 26 C 1.38371 * 120.14684 * 0.53485 * 25 24 23 27 27 C 1.38363 * 120.30723 * 359.75998 * 26 25 24 28 28 C 1.37942 * 120.15040 * 359.96036 * 27 26 25 29 29 C 1.52997 * 117.49756 * 108.97357 * 9 7 2 30 30 C 1.53000 * 117.49527 * 177.62949 * 9 7 2 31 31 H 0.96999 * 120.00420 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47768 * 64.78296 * 10 9 7 33 33 H 1.08997 * 109.47300 * 304.77996 * 10 9 7 34 34 H 1.07997 * 125.63516 * 359.70609 * 15 14 12 35 35 H 1.07997 * 119.87450 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.46404 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.08010 * 359.97438 * 24 23 22 38 38 H 1.07997 * 119.92579 * 180.27351 * 25 24 23 39 39 H 1.08005 * 119.84687 * 179.74229 * 26 25 24 40 40 H 1.08004 * 119.92828 * 179.97438 * 27 26 25 41 41 H 1.08003 * 120.07706 * 180.02562 * 28 27 26 42 42 H 1.09006 * 117.49789 * 215.00569 * 29 9 7 43 43 H 1.09000 * 117.50112 * 0.02562 * 29 9 7 44 44 H 1.08997 * 117.50183 * 359.97438 * 30 9 7 45 45 H 1.09005 * 117.49668 * 144.97901 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3843 2.1113 -1.3940 5 1 1.5073 2.6177 0.8094 6 1 3.5984 1.4104 0.5848 7 6 2.0045 -1.1940 0.0005 8 1 1.4801 -2.1204 0.1833 9 6 3.4898 -1.2066 -0.2540 10 6 3.9916 -0.1916 -1.2829 11 8 5.4118 -0.3927 -1.5084 12 6 6.0207 0.4494 -2.3685 13 8 5.4070 1.3900 -2.8359 14 6 7.4198 0.2314 -2.7394 15 6 8.2920 -0.7287 -2.1931 16 7 9.4555 -0.6187 -2.7772 17 7 9.4077 0.4080 -3.7258 18 6 8.1509 0.9426 -3.7121 19 7 7.8238 1.9468 -4.5252 20 6 8.6971 2.4569 -5.3678 21 6 9.9954 1.9503 -5.4266 22 6 10.3489 0.9099 -4.5884 23 6 11.7145 0.3476 -4.6219 24 6 12.0331 -0.7673 -3.8440 25 6 13.3087 -1.2908 -3.8844 26 6 14.2745 -0.7068 -4.6850 27 6 13.9672 0.4018 -5.4538 28 6 12.6941 0.9321 -5.4273 29 6 4.4065 -1.5259 0.9286 30 6 4.2068 -2.5565 -0.1855 31 1 -0.4851 0.8400 0.0004 32 1 3.8224 0.8183 -0.9095 33 1 3.4522 -0.3274 -2.2203 34 1 8.0421 -1.4360 -1.4162 35 1 8.4071 3.2702 -6.0164 36 1 10.7148 2.3665 -6.1162 37 1 11.2815 -1.2213 -3.2152 38 1 13.5553 -2.1557 -3.2866 39 1 15.2728 -1.1182 -4.7098 40 1 14.7259 0.8530 -6.0762 41 1 12.4555 1.7973 -6.0281 42 1 5.3672 -1.0128 0.9736 43 1 3.9353 -1.7273 1.8906 44 1 3.6043 -3.4353 0.0442 45 1 5.0359 -2.7215 -0.8737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084562896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = 112.143137 kcal Electronic energy + Delta-G solvation = -31052.498299 eV Core-core repulsion = 26811.308044 eV Total energy + Delta-G solvation = -4241.190256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.81156 -39.88035 -39.47680 -38.31163 -36.96570 -35.14175 -34.88497 -32.21645 -32.16451 -31.41567 -30.88081 -29.72757 -27.64736 -25.57909 -25.47958 -24.27738 -23.04296 -22.73818 -22.32374 -21.32229 -20.24701 -19.08372 -18.62936 -17.81263 -17.73715 -16.96857 -16.70349 -16.61219 -16.16809 -15.71186 -15.64522 -15.52685 -15.12404 -14.56522 -14.46406 -13.97659 -13.80432 -13.65072 -13.61654 -13.39497 -13.21820 -12.99290 -12.72436 -12.58253 -12.15592 -11.79815 -11.69052 -11.64160 -11.35699 -11.00935 -10.67758 -10.39161 -10.36161 -10.17194 -10.06587 -10.00125 -9.61917 -9.55052 -9.44198 -9.43553 -9.18382 -8.62596 -8.28966 -8.18880 -6.19674 -4.14351 -0.45402 0.28709 0.82728 1.05680 1.42489 1.88318 2.78554 3.08680 3.25714 3.31924 3.33638 3.41611 3.43828 3.50445 3.58496 3.80405 4.14606 4.35402 4.38395 4.45579 4.49988 4.63656 4.75947 4.79841 4.82999 4.86658 4.93736 4.96241 5.28868 5.37507 5.41679 5.54286 5.58882 5.74131 5.80685 5.81764 5.88940 5.94113 5.96500 6.10230 6.19382 6.31029 6.36452 6.60952 6.65901 6.81944 6.95347 7.05432 7.12907 7.27677 7.28698 7.68702 8.34363 8.47919 8.84786 9.43208 10.92113 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.019721 B = 0.002261 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.471207 B =12380.309152 C =13528.326808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.258 1.258 7 C -0.482 4.482 8 H 0.085 0.915 9 C 0.004 3.996 10 C 0.091 3.909 11 O -0.351 6.351 12 C 0.535 3.465 13 O -0.503 6.503 14 C -0.269 4.269 15 C 0.157 3.843 16 N -0.320 5.320 17 N -0.303 5.303 18 C 0.333 3.667 19 N -0.449 5.449 20 C 0.191 3.809 21 C -0.224 4.224 22 C 0.250 3.750 23 C -0.087 4.087 24 C -0.081 4.081 25 C -0.125 4.125 26 C -0.093 4.093 27 C -0.128 4.128 28 C -0.081 4.081 29 C -0.199 4.199 30 C -0.178 4.178 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.216 0.784 35 H 0.188 0.812 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.067 2.005 -13.436 34.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.519 4.519 8 H 0.103 0.897 9 C 0.003 3.997 10 C 0.019 3.981 11 O -0.268 6.268 12 C 0.378 3.622 13 O -0.392 6.392 14 C -0.284 4.284 15 C -0.023 4.023 16 N -0.143 5.143 17 N -0.071 5.071 18 C 0.101 3.899 19 N -0.160 5.160 20 C 0.011 3.989 21 C -0.247 4.247 22 C 0.132 3.868 23 C -0.088 4.088 24 C -0.100 4.100 25 C -0.143 4.143 26 C -0.112 4.112 27 C -0.146 4.146 28 C -0.100 4.100 29 C -0.237 4.237 30 C -0.215 4.215 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.205 0.795 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 31.838 2.069 -13.316 34.573 hybrid contribution 0.308 1.075 -0.062 1.119 sum 32.146 3.144 -13.378 34.960 Atomic orbital electron populations 1.69896 1.06254 1.27442 1.48465 1.24995 0.94698 0.99015 0.93895 0.87159 0.79785 0.83789 0.79029 1.19741 1.21916 1.18410 1.20290 0.87417 0.95271 1.48880 0.89679 1.19381 0.93954 0.92731 0.93612 1.23482 0.74303 1.00171 1.00175 1.86479 1.27442 1.54605 1.58289 1.19401 0.85534 0.80419 0.76797 1.90898 1.66094 1.29992 1.52178 1.18468 0.94942 1.06992 1.07974 1.24411 0.88021 0.94575 0.95273 1.77233 1.22509 1.07504 1.07004 1.47060 1.09507 1.24666 1.25848 1.20271 0.83082 0.91433 0.95162 1.68240 1.34088 1.08251 1.05373 1.23527 0.87875 0.95605 0.91846 1.22215 1.00104 0.98963 1.03421 1.19554 0.88186 0.91774 0.87270 1.18400 0.89769 0.98627 1.01959 1.22242 0.98006 0.93616 0.96142 1.21249 0.92969 1.00568 0.99539 1.21480 0.99621 0.95160 0.94932 1.21096 0.96314 0.96985 1.00189 1.21235 0.92519 0.99181 0.97050 1.23094 1.00982 1.04922 0.94700 1.22730 1.02698 0.93615 1.02466 0.92198 0.91766 0.90763 0.76746 0.79508 0.81078 0.82172 0.85092 0.85404 0.85059 0.84907 0.90950 0.89810 0.90076 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.08 2.28 5.43 -17.82 -0.10 2.18 16 3 Si 0.87 22.84 24.22 -169.99 -4.12 18.73 16 4 H -0.27 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 6 H -0.26 -6.60 6.38 56.52 0.36 -6.24 16 7 C -0.48 -13.69 9.57 -34.44 -0.33 -14.02 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.00 0.10 1.82 -155.66 -0.28 -0.18 16 10 C 0.09 2.20 4.24 37.15 0.16 2.36 16 11 O -0.35 -7.43 8.33 -41.01 -0.34 -7.77 16 12 C 0.53 11.11 7.91 34.01 0.27 11.38 16 13 O -0.50 -12.04 16.51 -19.38 -0.32 -12.36 16 14 C -0.27 -4.57 6.16 -104.65 -0.65 -5.22 16 15 C 0.16 2.11 11.80 -17.11 -0.20 1.91 16 16 N -0.32 -4.12 9.45 30.78 0.29 -3.83 16 17 N -0.30 -3.94 3.86 -8.40 -0.03 -3.97 16 18 C 0.33 5.20 7.75 -155.88 -1.21 4.00 16 19 N -0.45 -6.56 10.24 -12.08 -0.12 -6.69 16 20 C 0.19 1.67 11.26 -17.17 -0.19 1.48 16 21 C -0.22 -1.53 9.48 -39.13 -0.37 -1.90 16 22 C 0.25 2.44 6.80 -81.61 -0.56 1.89 16 23 C -0.09 -0.72 5.87 -104.98 -0.62 -1.34 16 24 C -0.08 -0.72 9.49 -39.17 -0.37 -1.09 16 25 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 26 C -0.09 -0.49 10.04 -39.49 -0.40 -0.88 16 27 C -0.13 -0.61 10.03 -39.64 -0.40 -1.00 16 28 C -0.08 -0.44 9.44 -39.17 -0.37 -0.81 16 29 C -0.20 -4.33 9.66 -26.70 -0.26 -4.58 16 30 C -0.18 -3.73 9.63 -26.70 -0.26 -3.98 16 31 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.06 1.67 2.50 -51.93 -0.13 1.54 16 33 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.22 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.17 0.40 6.29 -52.48 -0.33 0.07 16 37 H 0.16 1.62 5.07 -52.48 -0.27 1.35 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 40 H 0.13 0.30 8.06 -52.48 -0.42 -0.12 16 41 H 0.13 0.34 6.29 -52.48 -0.33 0.01 16 42 H 0.07 1.47 7.81 -51.93 -0.41 1.06 16 43 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 45 H 0.08 1.51 7.51 -51.93 -0.39 1.12 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -37.16 380.14 -9.50 -46.65 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.83 Total: 0.78 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -6.52 Total: -11.06 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.91 Total: -40.69 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.66 Total: -20.13 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.12 Total: 18.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.16 -9.50 -46.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084562896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.797 kcal (2) G-P(sol) polarization free energy of solvation -37.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds