Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48494 * 109.47088 * 275.31369 * 3 2 1 5 5 H 1.48501 * 109.47273 * 35.31725 * 3 2 1 6 6 H 1.48506 * 109.46917 * 155.31332 * 3 2 1 7 7 C 1.37870 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00846 * 348.75513 * 7 2 1 9 9 C 1.50707 * 119.99610 * 168.75299 * 7 2 1 10 10 C 1.52993 * 115.54895 * 323.30026 * 9 7 2 11 11 O 1.45202 * 109.47177 * 184.78449 * 10 9 7 12 12 C 1.34888 * 117.00447 * 181.67991 * 11 10 9 13 13 O 1.21647 * 119.99930 * 5.65193 * 12 11 10 14 14 C 1.46381 * 120.00349 * 185.65067 * 12 11 10 15 15 C 1.40745 * 126.54972 * 353.65512 * 14 12 11 16 16 N 1.30656 * 108.71534 * 179.97438 * 15 14 12 17 17 N 1.39871 * 109.54441 * 0.02562 * 16 15 14 18 18 C 1.36579 * 108.17886 * 359.97438 * 17 16 15 19 19 N 1.33282 * 120.96708 * 180.02562 * 18 17 16 20 20 C 1.31635 * 121.30926 * 0.02562 * 19 18 17 21 21 C 1.39482 * 120.24597 * 0.02562 * 20 19 18 22 22 C 1.37177 * 132.18401 * 180.02562 * 17 16 15 23 23 C 1.47724 * 120.61861 * 359.97438 * 22 17 16 24 24 C 1.39629 * 120.14723 * 4.72577 * 23 22 17 25 25 C 1.37944 * 119.84641 * 179.72049 * 24 23 22 26 26 C 1.38371 * 120.14684 * 0.53485 * 25 24 23 27 27 C 1.38363 * 120.30723 * 359.75998 * 26 25 24 28 28 C 1.37942 * 120.15040 * 359.96036 * 27 26 25 29 29 C 1.52997 * 117.49756 * 108.97357 * 9 7 2 30 30 C 1.53000 * 117.49527 * 177.62949 * 9 7 2 31 31 H 0.96999 * 120.00420 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47768 * 64.78296 * 10 9 7 33 33 H 1.08997 * 109.47300 * 304.77996 * 10 9 7 34 34 H 1.07997 * 125.63516 * 359.70609 * 15 14 12 35 35 H 1.07997 * 119.87450 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.46404 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.08010 * 359.97438 * 24 23 22 38 38 H 1.07997 * 119.92579 * 180.27351 * 25 24 23 39 39 H 1.08005 * 119.84687 * 179.74229 * 26 25 24 40 40 H 1.08004 * 119.92828 * 179.97438 * 27 26 25 41 41 H 1.08003 * 120.07706 * 180.02562 * 28 27 26 42 42 H 1.09006 * 117.49789 * 215.00569 * 29 9 7 43 43 H 1.09000 * 117.50112 * 0.02562 * 29 9 7 44 44 H 1.08997 * 117.50183 * 359.97438 * 30 9 7 45 45 H 1.09005 * 117.49668 * 144.97901 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3843 2.1113 -1.3940 5 1 1.5073 2.6177 0.8094 6 1 3.5984 1.4104 0.5848 7 6 2.0045 -1.1940 0.0005 8 1 1.4801 -2.1204 0.1833 9 6 3.4898 -1.2066 -0.2540 10 6 3.9916 -0.1916 -1.2829 11 8 5.4118 -0.3927 -1.5084 12 6 6.0207 0.4494 -2.3685 13 8 5.4070 1.3900 -2.8359 14 6 7.4198 0.2314 -2.7394 15 6 8.2920 -0.7287 -2.1931 16 7 9.4555 -0.6187 -2.7772 17 7 9.4077 0.4080 -3.7258 18 6 8.1509 0.9426 -3.7121 19 7 7.8238 1.9468 -4.5252 20 6 8.6971 2.4569 -5.3678 21 6 9.9954 1.9503 -5.4266 22 6 10.3489 0.9099 -4.5884 23 6 11.7145 0.3476 -4.6219 24 6 12.0331 -0.7673 -3.8440 25 6 13.3087 -1.2908 -3.8844 26 6 14.2745 -0.7068 -4.6850 27 6 13.9672 0.4018 -5.4538 28 6 12.6941 0.9321 -5.4273 29 6 4.4065 -1.5259 0.9286 30 6 4.2068 -2.5565 -0.1855 31 1 -0.4851 0.8400 0.0004 32 1 3.8224 0.8183 -0.9095 33 1 3.4522 -0.3274 -2.2203 34 1 8.0421 -1.4360 -1.4162 35 1 8.4071 3.2702 -6.0164 36 1 10.7148 2.3665 -6.1162 37 1 11.2815 -1.2213 -3.2152 38 1 13.5553 -2.1557 -3.2866 39 1 15.2728 -1.1182 -4.7098 40 1 14.7259 0.8530 -6.0762 41 1 12.4555 1.7973 -6.0281 42 1 5.3672 -1.0128 0.9736 43 1 3.9353 -1.7273 1.8906 44 1 3.6043 -3.4353 0.0442 45 1 5.0359 -2.7215 -0.8737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084562896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = 89.864344 kcal Electronic energy + Delta-G solvation = -31053.464380 eV Core-core repulsion = 26811.308044 eV Total energy + Delta-G solvation = -4242.156337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.72471 -41.29498 -40.19813 -39.17631 -38.73977 -36.79560 -35.74042 -34.41602 -32.91718 -31.93297 -31.66525 -30.64921 -29.44462 -27.40521 -26.25112 -25.46086 -23.89685 -23.28941 -23.20416 -23.06131 -21.44265 -21.08587 -19.61374 -18.95197 -18.69834 -18.34424 -17.90799 -17.76025 -17.30801 -17.21996 -16.60514 -16.55430 -16.23101 -15.70348 -15.53558 -15.16388 -15.14099 -14.63613 -14.51339 -14.49294 -14.22960 -14.09952 -14.06844 -13.88918 -13.59346 -13.07945 -12.94017 -12.68622 -12.49456 -12.35877 -12.26792 -12.05504 -11.98729 -11.81468 -11.50342 -11.41029 -11.16163 -10.95087 -10.91736 -10.64811 -10.27760 -10.08485 -9.96304 -9.12338 -8.45642 -6.41015 -1.13871 -0.57235 0.40169 0.45084 0.55851 0.77211 1.21932 1.27381 1.31432 1.64338 1.82895 2.17836 2.28498 2.56350 2.69786 2.76328 2.80915 3.03544 3.37963 3.54026 3.73661 3.76644 3.97421 3.98566 3.98996 4.03237 4.06906 4.15999 4.22822 4.26661 4.38052 4.44008 4.47418 4.50483 4.78049 4.81693 4.87886 4.96471 4.97510 5.03977 5.06937 5.18960 5.24592 5.42791 5.45644 5.46832 5.57545 5.58099 5.59901 5.91800 6.00636 6.20199 6.44352 6.58727 6.78677 7.18046 8.70450 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.019721 B = 0.002261 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.471207 B =12380.309152 C =13528.326808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.033 3.967 3 Si 0.925 3.075 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.482 4.482 8 H 0.055 0.945 9 C -0.036 4.036 10 C 0.101 3.899 11 O -0.341 6.341 12 C 0.535 3.465 13 O -0.548 6.548 14 C -0.321 4.321 15 C 0.169 3.831 16 N -0.322 5.322 17 N -0.305 5.305 18 C 0.330 3.670 19 N -0.509 5.509 20 C 0.203 3.797 21 C -0.198 4.198 22 C 0.232 3.768 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.138 4.138 26 C -0.091 4.091 27 C -0.127 4.127 28 C -0.073 4.073 29 C -0.181 4.181 30 C -0.152 4.152 31 H 0.271 0.729 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.239 0.761 35 H 0.232 0.768 36 H 0.228 0.772 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.451 2.987 -15.538 40.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.167 4.167 3 Si 0.755 3.245 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.519 4.519 8 H 0.074 0.926 9 C -0.037 4.037 10 C 0.028 3.972 11 O -0.257 6.257 12 C 0.382 3.618 13 O -0.440 6.440 14 C -0.336 4.336 15 C -0.013 4.013 16 N -0.143 5.143 17 N -0.072 5.072 18 C 0.095 3.905 19 N -0.222 5.222 20 C 0.028 3.972 21 C -0.220 4.220 22 C 0.116 3.884 23 C -0.109 4.109 24 C -0.128 4.128 25 C -0.155 4.155 26 C -0.109 4.109 27 C -0.145 4.145 28 C -0.092 4.092 29 C -0.218 4.218 30 C -0.189 4.189 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.248 0.752 36 H 0.244 0.756 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.181 0.819 41 H 0.186 0.814 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 37.293 3.045 -15.434 40.475 hybrid contribution -1.035 0.757 0.357 1.331 sum 36.258 3.802 -15.076 39.451 Atomic orbital electron populations 1.69985 1.07522 1.28265 1.50815 1.25580 0.95212 1.01703 0.94176 0.86292 0.79208 0.80749 0.78279 1.21158 1.21167 1.17395 1.20456 0.89713 0.93958 1.47763 0.92637 1.19263 0.92409 0.95902 0.96096 1.23023 0.76133 0.98957 0.99132 1.86457 1.25523 1.54822 1.58922 1.20005 0.86719 0.79413 0.75636 1.90855 1.67369 1.31801 1.53945 1.18280 0.93543 1.10457 1.11305 1.24722 0.87383 0.93927 0.95235 1.77269 1.22042 1.07786 1.07167 1.47224 1.09476 1.24373 1.26126 1.20306 0.83770 0.91537 0.94898 1.68283 1.36671 1.09599 1.07689 1.24447 0.87856 0.95064 0.89843 1.22881 1.00126 0.96738 1.02245 1.20363 0.88566 0.92488 0.87029 1.18529 0.89636 0.99237 1.03500 1.22211 0.98636 0.94797 0.97115 1.21424 0.92651 1.01150 1.00319 1.21860 1.00258 0.95018 0.93805 1.21550 0.96738 0.96405 0.99772 1.21640 0.91925 0.99599 0.95997 1.23083 1.00525 1.04302 0.93915 1.22811 1.02177 0.92027 1.01911 0.91964 0.93563 0.92566 0.74526 0.75170 0.75590 0.84321 0.84322 0.82972 0.81863 0.81387 0.88982 0.89750 0.89691 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.71 13.96 21.44 0.30 -58.41 16 2 C 0.03 2.01 5.43 84.65 0.46 2.47 16 3 Si 0.93 49.05 24.22 68.60 1.66 50.71 16 4 H -0.28 -15.54 7.11 99.48 0.71 -14.84 16 5 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.25 -12.63 6.38 99.48 0.64 -12.00 16 7 C -0.48 -28.25 9.57 25.60 0.25 -28.00 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 C -0.04 -1.77 1.82 -52.93 -0.10 -1.87 16 10 C 0.10 5.00 4.24 71.98 0.31 5.30 16 11 O -0.34 -14.61 8.33 -58.03 -0.48 -15.09 16 12 C 0.54 23.07 7.91 69.94 0.55 23.62 16 13 O -0.55 -27.55 16.51 19.36 0.32 -27.23 16 14 C -0.32 -11.24 6.16 -19.88 -0.12 -11.37 16 15 C 0.17 4.57 11.80 85.48 1.01 5.58 16 16 N -0.32 -8.32 9.45 -56.54 -0.53 -8.85 16 17 N -0.30 -7.78 3.86 -180.48 -0.70 -8.48 16 18 C 0.33 10.43 7.75 134.05 1.04 11.47 16 19 N -0.51 -14.69 10.24 -192.14 -1.97 -16.66 16 20 C 0.20 2.94 11.26 85.02 0.96 3.90 16 21 C -0.20 -1.87 9.48 22.56 0.21 -1.65 16 22 C 0.23 4.00 6.80 40.81 0.28 4.28 16 23 C -0.11 -1.51 5.87 -20.10 -0.12 -1.63 16 24 C -0.11 -1.80 9.49 22.54 0.21 -1.59 16 25 C -0.14 -1.59 10.03 22.23 0.22 -1.37 16 26 C -0.09 -0.62 10.04 22.33 0.22 -0.40 16 27 C -0.13 -0.58 10.03 22.23 0.22 -0.36 16 28 C -0.07 -0.45 9.44 22.54 0.21 -0.24 16 29 C -0.18 -7.60 9.66 30.62 0.30 -7.30 16 30 C -0.15 -6.18 9.63 30.62 0.29 -5.89 16 31 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 32 H 0.05 2.47 2.50 -2.39 -0.01 2.46 16 33 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.24 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.23 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.23 -0.55 6.29 -2.91 -0.02 -0.57 16 37 H 0.14 2.85 5.07 -2.91 -0.01 2.83 16 38 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.16 -0.27 8.06 -2.91 -0.02 -0.29 16 41 H 0.17 -0.30 6.29 -2.91 -0.02 -0.31 16 42 H 0.09 3.53 7.81 -2.38 -0.02 3.51 16 43 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 44 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 45 H 0.10 3.74 7.51 -2.38 -0.02 3.72 16 Total: -1.00 -88.60 380.14 5.99 -82.61 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.99 Total: 6.46 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 6.41 Total: -5.05 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -2.90 Total: -92.40 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.16 Total: -42.32 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.66 Total: 50.71 kcal Total: -88.60 5.99 -82.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084562896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.470 kcal (2) G-P(sol) polarization free energy of solvation -88.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds