Wall clock time and date at job start Tue Mar 31 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47399 * 2 1 4 4 H 1.09002 * 109.52475 * 305.07698 * 3 2 1 5 5 C 1.53149 * 109.49654 * 185.00217 * 3 2 1 6 6 C 1.53160 * 108.96730 * 169.37133 * 5 3 2 7 7 C 1.51464 * 108.69219 * 49.77761 * 6 5 3 8 8 S 1.75823 * 125.13932 * 163.84565 * 7 6 5 9 9 C 1.75713 * 91.14424 * 180.11099 * 8 7 6 10 10 C 1.47186 * 125.28774 * 179.97438 * 9 8 7 11 11 N 1.31488 * 126.49815 * 164.66684 * 10 9 8 12 12 N 1.28501 * 109.95798 * 180.02562 * 11 10 9 13 13 C 1.31358 * 110.15161 * 359.97438 * 12 11 10 14 14 S 1.76197 * 126.36159 * 180.26085 * 13 12 11 15 15 C 1.80992 * 100.00255 * 359.69076 * 14 13 12 16 16 C 1.50703 * 109.47160 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99805 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00163 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00409 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 120.00001 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47246 * 89.99511 * 20 18 16 22 22 H 1.48496 * 109.47026 * 209.99570 * 20 18 16 23 23 H 1.48500 * 109.46753 * 329.99791 * 20 18 16 24 24 N 1.36735 * 107.26749 * 0.02562 * 13 12 11 25 25 C 1.46498 * 127.18699 * 180.02562 * 24 13 12 26 26 C 1.34598 * 109.42781 * 359.68160 * 9 8 7 27 27 C 1.34944 * 124.71262 * 343.60911 * 7 6 5 28 28 C 1.52318 * 122.79978 * 359.97438 * 27 7 6 29 29 H 1.09000 * 109.46780 * 300.00017 * 1 2 3 30 30 H 1.08999 * 109.47029 * 59.99456 * 1 2 3 31 31 H 1.08998 * 109.47616 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46870 * 239.99847 * 2 1 3 33 33 H 1.08999 * 109.47029 * 120.00543 * 2 1 3 34 34 H 1.08998 * 109.55996 * 49.52876 * 5 3 2 35 35 H 1.09004 * 109.64094 * 289.27115 * 5 3 2 36 36 H 1.08994 * 109.60242 * 290.01645 * 6 5 3 37 37 H 1.08997 * 109.59801 * 169.53448 * 6 5 3 38 38 H 1.09006 * 109.47354 * 299.99859 * 15 14 13 39 39 H 1.09002 * 109.47359 * 60.00373 * 15 14 13 40 40 H 0.97001 * 120.00467 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46887 * 89.97849 * 25 24 13 42 42 H 1.09000 * 109.47370 * 209.97224 * 25 24 13 43 43 H 1.09001 * 109.47427 * 329.97645 * 25 24 13 44 44 H 1.07999 * 122.27463 * 180.23338 * 26 9 8 45 45 H 1.09000 * 109.58266 * 102.34550 * 28 27 7 46 46 H 1.08999 * 109.57824 * 222.75681 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9827 -0.8408 5 6 3.5664 1.4448 -0.1259 6 6 4.0417 2.8764 -0.3915 7 6 3.4034 3.7968 0.6281 8 16 3.9366 5.4332 0.9879 9 6 2.6691 5.6194 2.1906 10 6 2.4378 6.8251 3.0024 11 7 1.3555 7.1065 3.6940 12 7 1.4937 8.2402 4.2830 13 6 2.6707 8.7535 4.0060 14 16 3.3053 10.2887 4.5934 15 6 1.9042 10.8455 5.5947 16 6 2.2287 12.1804 6.2144 17 1 3.1840 12.6465 6.0233 18 6 1.3057 12.8070 7.0246 19 7 1.5890 13.9716 7.5658 20 14 -0.3470 12.0010 7.3546 21 1 -0.2453 11.1382 8.5589 22 1 -1.3727 13.0503 7.5826 23 1 -0.7366 11.1738 6.1845 24 7 3.3139 7.8725 3.1814 25 6 4.6550 8.0131 2.6090 26 6 1.9386 4.4904 2.2496 27 6 2.3365 3.4775 1.3901 28 6 1.6389 2.1259 1.3080 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8653 0.8018 -0.9536 35 1 4.0109 1.0786 0.7995 36 1 3.7442 3.1802 -1.3951 37 1 5.1266 2.9245 -0.2989 38 1 1.0219 10.9439 4.9622 39 1 1.7078 10.1174 6.3817 40 1 0.9394 14.4126 8.1355 41 1 5.3871 7.5732 3.2863 42 1 4.6954 7.5005 1.6479 43 1 4.8805 9.0700 2.4669 44 1 1.0997 4.3808 2.9209 45 1 1.9430 1.5060 2.1514 46 1 0.5587 2.2706 1.3291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084735495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:24 Heat of formation + Delta-G solvation = 79.769569 kcal Electronic energy + Delta-G solvation = -26472.793888 eV Core-core repulsion = 22808.396631 eV Total energy + Delta-G solvation = -3664.397256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54202 -39.79434 -36.57279 -34.98096 -33.57144 -33.12547 -31.42399 -29.82280 -29.47223 -28.36739 -27.64913 -24.82657 -24.37666 -22.92563 -22.58839 -22.02952 -21.26296 -20.15944 -18.43486 -17.83984 -17.39225 -16.77559 -16.32109 -15.94599 -15.68593 -15.05389 -14.96548 -14.68629 -14.32996 -14.24121 -13.77852 -13.60857 -13.60484 -13.42614 -13.16943 -13.11654 -12.83294 -12.66761 -12.43229 -12.35835 -12.07374 -11.97705 -11.51186 -11.46802 -11.32099 -11.03704 -10.92649 -10.82530 -10.79158 -10.60549 -10.41599 -10.21491 -10.15579 -10.00721 -9.83675 -9.37988 -8.76955 -8.67677 -8.46904 -7.03800 -6.24889 -4.30484 0.36292 1.10974 1.54395 1.61973 1.82454 2.47085 2.62108 3.11571 3.13642 3.28072 3.35950 3.43227 4.05263 4.17163 4.31552 4.33190 4.37270 4.47675 4.59840 4.70355 4.85417 4.91059 4.96715 5.03832 5.08496 5.09186 5.13648 5.18181 5.24181 5.29703 5.37186 5.43722 5.49619 5.55773 5.59487 5.62366 5.69511 5.71063 5.86489 5.93586 6.00294 6.01809 6.11313 6.27755 6.63400 6.66808 6.71322 7.30562 8.16961 8.70461 8.78420 9.30323 10.85943 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.001973 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.869741 B =14190.197595 C =15435.254217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.075 0.925 5 C -0.110 4.110 6 C -0.047 4.047 7 C -0.178 4.178 8 S 0.118 5.882 9 C -0.109 4.109 10 C 0.225 3.775 11 N -0.259 5.259 12 N -0.292 5.292 13 C 0.182 3.818 14 S -0.008 6.008 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.084 0.916 18 C 0.088 3.912 19 N -0.887 5.887 20 Si 0.874 3.126 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.257 1.257 24 N -0.471 5.471 25 C 0.076 3.924 26 C -0.083 4.083 27 C -0.099 4.099 28 C -0.051 4.051 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.270 0.730 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.149 0.851 45 H 0.078 0.922 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -27.903 -18.972 34.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.093 0.907 5 C -0.149 4.149 6 C -0.086 4.086 7 C -0.296 4.296 8 S 0.385 5.615 9 C -0.229 4.229 10 C -0.042 4.042 11 N -0.101 5.101 12 N -0.137 5.137 13 C -0.191 4.191 14 S 0.222 5.778 15 C -0.115 4.115 16 C -0.567 4.567 17 H 0.102 0.898 18 C -0.118 4.118 19 N -0.523 5.523 20 Si 0.699 3.301 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.181 1.181 24 N -0.167 5.167 25 C -0.068 4.068 26 C -0.116 4.116 27 C -0.110 4.110 28 C -0.090 4.090 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.167 0.833 45 H 0.096 0.904 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.155 -26.321 -18.977 33.228 hybrid contribution -1.832 -1.430 0.512 2.380 sum 5.323 -27.750 -18.466 33.755 Atomic orbital electron populations 1.21831 0.95737 1.01623 1.02175 1.21575 0.96086 0.95835 1.02096 1.21211 0.95392 0.96054 0.98062 0.90706 1.21641 0.95557 0.95256 1.02439 1.20323 0.99522 0.92773 0.95960 1.25086 1.01713 0.98166 1.04671 1.83914 1.31841 1.10627 1.35096 1.20915 1.03864 0.94835 1.03255 1.21580 0.89057 0.90265 1.03300 1.74363 1.18504 1.08828 1.08421 1.74773 1.13741 1.03858 1.21344 1.27617 0.93782 1.00408 0.97306 1.85564 1.27554 1.05951 1.58775 1.21723 0.92312 1.00679 0.96829 1.20348 1.04696 1.00963 1.30673 0.89783 1.24760 0.98258 0.94445 0.94325 1.69847 1.36007 1.15002 1.31475 0.86839 0.83504 0.79632 0.80090 1.19630 1.20738 1.18123 1.46377 1.15592 1.16086 1.38596 1.22182 0.80219 1.05356 0.99012 1.20167 1.00740 0.90667 1.00047 1.19464 0.96784 0.97323 0.97473 1.20642 0.99674 0.90884 0.97835 0.92304 0.92716 0.92841 0.91893 0.91833 0.91016 0.91318 0.90118 0.90373 0.92814 0.93257 0.91991 0.89328 0.89868 0.87889 0.83292 0.90357 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.68 37.16 0.36 -0.42 16 2 C -0.12 -0.56 5.39 -26.73 -0.14 -0.70 16 3 C -0.09 -0.50 2.14 -90.58 -0.19 -0.70 16 4 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 5 C -0.11 -0.57 5.25 -26.57 -0.14 -0.71 16 6 C -0.05 -0.28 6.26 -27.43 -0.17 -0.46 16 7 C -0.18 -1.59 6.35 -35.10 -0.22 -1.81 16 8 S 0.12 1.18 20.18 -107.50 -2.17 -0.99 16 9 C -0.11 -1.47 6.35 -37.24 -0.24 -1.71 16 10 C 0.23 3.83 7.87 -153.73 -1.21 2.62 16 11 N -0.26 -5.25 12.20 32.50 0.40 -4.86 16 12 N -0.29 -6.48 11.58 30.73 0.36 -6.13 16 13 C 0.18 3.61 8.07 -88.09 -0.71 2.90 16 14 S -0.01 -0.17 21.73 -107.50 -2.34 -2.50 16 15 C 0.03 0.81 4.05 36.01 0.15 0.96 16 16 C -0.53 -14.66 9.68 -34.44 -0.33 -14.99 16 17 H 0.08 2.48 7.95 -52.48 -0.42 2.06 16 18 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 19 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 20 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 N -0.47 -7.72 3.24 -121.57 -0.39 -8.11 16 25 C 0.08 0.85 10.67 59.85 0.64 1.49 16 26 C -0.08 -0.99 9.89 -40.71 -0.40 -1.40 16 27 C -0.10 -0.95 5.77 -104.83 -0.60 -1.55 16 28 C -0.05 -0.36 4.95 -27.11 -0.13 -0.50 16 29 H 0.06 0.31 6.79 -51.93 -0.35 -0.05 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.26 8.12 -51.92 -0.42 -0.16 16 33 H 0.06 0.29 8.13 -51.93 -0.42 -0.13 16 34 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 1.35 7.20 -51.91 -0.37 0.98 16 39 H 0.05 1.23 7.57 -51.91 -0.39 0.83 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.78 5.17 -45.49 -0.24 0.55 16 43 H 0.10 1.07 7.86 -51.93 -0.41 0.66 16 44 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 45 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.08 0.55 7.04 -51.93 -0.37 0.19 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -32.59 394.27 -12.33 -44.92 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -6.78 Total: -4.93 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.46 Total: -14.58 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 1.13 Total: -44.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -4.51 Total: -3.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.59 -12.33 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084735495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.693 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds