Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 110.40621 * 2 1 4 4 C 1.52170 * 110.36260 * 237.71609 * 2 1 3 5 5 O 1.20768 * 127.32679 * 60.81397 * 4 2 1 6 6 C 1.53513 * 105.34601 * 240.85560 * 4 2 1 7 7 Br 1.96608 * 116.44219 * 160.64474 * 6 4 2 8 8 C 1.55922 * 104.55644 * 289.85693 * 6 4 2 9 9 C 1.55795 * 104.68488 * 71.13744 * 8 6 4 10 10 C 1.55968 * 110.35408 * 122.27273 * 2 1 3 11 11 C 1.50698 * 116.10668 * 319.12776 * 10 2 1 12 12 H 1.07996 * 119.99972 * 92.93888 * 11 10 2 13 13 C 1.37882 * 119.99983 * 272.66423 * 11 10 2 14 14 N 1.31507 * 119.99990 * 355.44003 * 13 11 10 15 15 Si 1.86796 * 119.99839 * 175.43331 * 13 11 10 16 16 H 1.48508 * 109.47084 * 60.00305 * 15 13 11 17 17 H 1.48497 * 109.47088 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47394 * 300.00332 * 15 13 11 19 19 C 1.56923 * 100.84548 * 34.04097 * 6 4 2 20 20 H 1.09003 * 112.08628 * 63.25382 * 19 6 4 21 21 Br 1.96595 * 112.09019 * 189.94459 * 19 6 4 22 22 H 1.08993 * 109.47240 * 297.72888 * 1 2 3 23 23 H 1.09001 * 109.46286 * 57.73004 * 1 2 3 24 24 H 1.08998 * 109.46877 * 177.72380 * 1 2 3 25 25 H 1.09006 * 109.46989 * 189.73096 * 3 2 1 26 26 H 1.09004 * 109.46828 * 309.72440 * 3 2 1 27 27 H 1.09001 * 109.47634 * 69.73267 * 3 2 1 28 28 H 1.08995 * 110.41768 * 189.24750 * 8 6 4 29 29 H 1.09000 * 110.41688 * 311.58228 * 8 6 4 30 30 H 1.08999 * 109.87308 * 240.51667 * 9 8 6 31 31 H 1.09003 * 111.52811 * 117.64784 * 9 8 6 32 32 H 0.96997 * 120.00128 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0635 1.4339 0.0000 4 6 2.0595 -0.7620 -1.2061 5 8 1.8753 -0.5069 -2.3720 6 6 2.8768 -1.9245 -0.6254 7 35 3.2218 -3.4397 -1.8299 8 6 4.1377 -1.2468 -0.0072 9 6 3.6067 -0.4993 1.2524 10 6 2.0725 -0.7808 1.2364 11 6 1.3438 -0.5541 2.5358 12 1 0.5396 -1.2138 2.8261 13 6 1.7076 0.4922 3.3568 14 7 2.7470 1.2375 3.0507 15 14 0.7239 0.8512 4.9037 16 1 0.7569 -0.3343 5.7975 17 1 1.3150 2.0182 5.6065 18 1 -0.6825 1.1554 4.5366 19 6 2.0534 -2.2456 0.6713 20 1 1.0426 -2.5831 0.4418 21 35 2.9941 -3.5056 1.8513 22 1 -0.3633 0.4781 0.9096 23 1 -0.3632 0.5487 -0.8690 24 1 -0.3633 -1.0268 -0.0408 25 1 3.1396 1.4213 -0.1737 26 1 1.5746 2.0034 -0.7904 27 1 1.8566 1.8987 0.9640 28 1 4.8668 -2.0002 0.2907 29 1 4.5814 -0.5494 -0.7176 30 1 3.7985 0.5695 1.1573 31 1 4.0553 -0.8876 2.1668 32 1 3.0031 1.9734 3.6284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085398911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -23.896245 kcal Electronic energy + Delta-G solvation = -18604.379419 eV Core-core repulsion = 15657.724475 eV Total energy + Delta-G solvation = -2946.654944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 363.941 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68673 -37.23843 -33.39685 -32.40117 -30.07811 -29.77932 -27.98808 -27.44966 -26.04473 -24.21077 -23.05380 -20.06853 -19.15741 -17.86863 -15.95951 -15.81345 -15.20605 -14.62459 -14.30498 -13.74989 -13.42834 -12.70780 -12.25429 -12.16007 -11.97593 -11.59336 -11.47850 -11.22153 -11.11178 -11.06185 -10.89306 -10.76400 -10.45510 -10.24188 -9.98998 -9.71849 -9.56158 -9.35075 -9.24211 -9.08251 -8.78804 -8.66740 -8.51339 -6.25045 -4.34209 1.76737 2.17670 2.54757 3.19656 3.25617 3.28988 4.17661 4.30088 4.58893 4.90729 4.94371 5.26513 5.62406 5.73162 5.77620 5.86348 5.98518 6.09086 6.15229 6.26783 6.38892 6.57274 6.58730 6.73661 6.83146 6.96654 7.23363 7.37332 7.61075 7.72280 7.84373 8.03181 8.66939 9.31000 10.76910 Molecular weight = 363.94amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.007025 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.358949 B = 3984.921939 C = 5055.110551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.110 4.110 3 C -0.119 4.119 4 C 0.389 3.611 5 O -0.435 6.435 6 C -0.091 4.091 7 Br -0.125 7.125 8 C -0.119 4.119 9 C -0.098 4.098 10 C 0.122 3.878 11 C -0.490 4.490 12 H 0.067 0.933 13 C 0.080 3.920 14 N -0.872 5.872 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.038 4.038 20 H 0.103 0.897 21 Br -0.140 7.140 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -5.165 -4.078 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.113 4.113 3 C -0.176 4.176 4 C 0.260 3.740 5 O -0.305 6.305 6 C -0.170 4.170 7 Br -0.042 7.042 8 C -0.157 4.157 9 C -0.136 4.136 10 C 0.120 3.880 11 C -0.527 4.527 12 H 0.086 0.914 13 C -0.125 4.125 14 N -0.508 5.508 15 Si 0.721 3.279 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.136 4.136 20 H 0.122 0.878 21 Br -0.058 7.058 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.613 -5.842 -4.662 7.646 hybrid contribution -0.618 0.485 0.596 0.986 sum 0.995 -5.357 -4.066 6.798 Atomic orbital electron populations 1.21545 0.92636 1.00995 1.02213 1.22666 0.97204 0.97816 0.93659 1.21734 0.99570 0.92940 1.03387 1.25835 0.74898 0.83143 0.90094 1.90329 1.51391 1.68258 1.20535 1.27757 1.02140 0.92021 0.95122 1.97275 1.96619 1.44978 1.65363 1.23270 0.93628 0.99650 0.99184 1.23103 0.95718 1.01425 0.93345 1.20503 0.93543 0.82347 0.91559 1.20266 1.17657 1.13401 1.01358 0.91444 1.24872 0.94515 0.95674 0.97398 1.69950 1.24200 1.18693 1.37954 0.86612 0.80307 0.78004 0.82956 1.19994 1.21235 1.20094 1.27114 0.96791 0.99295 0.90415 0.87838 1.97192 1.79533 1.60965 1.68093 0.89776 0.94005 0.93705 0.93041 0.94859 0.88253 0.90178 0.91725 0.88300 0.90463 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.11 37.16 0.30 -1.79 16 2 C -0.11 -2.10 0.55 -153.34 -0.08 -2.18 16 3 C -0.12 -2.26 7.49 37.15 0.28 -1.99 16 4 C 0.39 7.47 5.57 -26.89 -0.15 7.32 16 5 O -0.43 -9.02 17.94 5.99 0.11 -8.91 16 6 C -0.09 -1.65 1.55 -86.67 -0.13 -1.79 16 7 Br -0.12 -2.11 33.84 -68.01 -2.30 -4.41 16 8 C -0.12 -2.12 5.38 -23.68 -0.13 -2.24 16 9 C -0.10 -1.94 3.38 -23.65 -0.08 -2.02 16 10 C 0.12 2.44 0.42 -150.30 -0.06 2.37 16 11 C -0.49 -10.76 7.51 -34.44 -0.26 -11.02 16 12 H 0.07 1.51 7.82 -52.49 -0.41 1.10 16 13 C 0.08 1.80 5.18 -17.82 -0.09 1.70 16 14 N -0.87 -19.84 9.18 55.43 0.51 -19.33 16 15 Si 0.89 18.42 29.54 -169.99 -5.02 13.40 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 19 C -0.04 -0.71 3.26 -22.43 -0.07 -0.79 16 20 H 0.10 1.91 7.28 -51.93 -0.38 1.53 16 21 Br -0.14 -2.52 31.50 -68.01 -2.14 -4.66 16 22 H 0.08 1.55 7.37 -51.93 -0.38 1.16 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.76 7.25 -51.93 -0.38 0.38 16 25 H 0.05 0.96 6.30 -51.93 -0.33 0.64 16 26 H 0.03 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.10 2.04 6.35 -51.93 -0.33 1.71 16 28 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 29 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 30 H 0.10 2.07 4.48 -51.93 -0.23 1.83 16 31 H 0.08 1.66 7.69 -51.93 -0.40 1.26 16 32 H 0.27 5.95 8.31 -40.82 -0.34 5.61 16 LS Contribution 286.64 15.07 4.32 4.32 Total: -1.00 -22.29 286.64 -8.65 -30.94 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.64 Total: 1.06 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.48 Total: -12.40 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.51 Total: -19.33 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.11 Total: -8.91 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Atomic # 35 Polarization: -4.63 SS G_CDS: -4.44 Total: -9.08 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -22.29 -8.65 -30.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.041 kcal (2) G-P(sol) polarization free energy of solvation -22.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds