Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 110.40444 * 2 1 4 4 C 1.52172 * 110.35726 * 122.27050 * 2 1 3 5 5 O 1.20762 * 127.33116 * 298.89387 * 4 2 1 6 6 C 1.53526 * 105.33913 * 119.15161 * 4 2 1 7 7 Br 1.96601 * 115.84004 * 198.91650 * 6 4 2 8 8 C 1.58905 * 103.88659 * 69.87150 * 6 4 2 9 9 C 1.54607 * 104.29795 * 289.17938 * 8 6 4 10 10 C 1.55954 * 110.36070 * 237.71905 * 2 1 3 11 11 C 1.50700 * 116.10631 * 40.87490 * 10 2 1 12 12 H 1.08005 * 119.99550 * 359.97438 * 11 10 2 13 13 C 1.37875 * 120.00423 * 179.97438 * 11 10 2 14 14 N 1.31519 * 119.99597 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47039 * 60.00328 * 15 13 11 17 17 H 1.48502 * 109.46927 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47219 * 299.99751 * 15 13 11 19 19 C 1.56922 * 100.84501 * 325.95607 * 6 4 2 20 20 H 1.08994 * 112.08645 * 170.05588 * 19 6 4 21 21 Br 1.96596 * 112.08886 * 296.74445 * 19 6 4 22 22 H 1.08994 * 109.47230 * 319.89529 * 1 2 3 23 23 H 1.08995 * 109.46713 * 79.89739 * 1 2 3 24 24 H 1.09002 * 109.46869 * 199.89190 * 1 2 3 25 25 H 1.08999 * 109.47176 * 173.22505 * 3 2 1 26 26 H 1.09004 * 109.46874 * 293.21867 * 3 2 1 27 27 H 1.09001 * 109.47465 * 53.22408 * 3 2 1 28 28 H 1.09008 * 110.21058 * 170.67077 * 8 6 4 29 29 H 1.08998 * 110.89807 * 48.03385 * 8 6 4 30 30 H 1.08994 * 110.43903 * 241.99135 * 9 8 6 31 31 H 1.09000 * 110.43613 * 119.47655 * 9 8 6 32 32 H 0.96999 * 119.99756 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0635 1.4340 0.0000 4 6 2.0594 -0.7617 1.2063 5 8 1.8792 -0.5036 2.3722 6 6 2.8769 -1.9244 0.6257 7 35 3.2228 -3.4237 1.8494 8 6 4.1519 -1.2164 -0.0053 9 6 3.6020 -0.4740 -1.2450 10 6 2.0727 -0.7809 -1.2361 11 6 1.3441 -0.5543 -2.5357 12 1 0.4987 0.1170 -2.5709 13 6 1.7566 -1.2040 -3.6797 14 7 2.7863 -2.0211 -3.6369 15 14 0.8529 -0.9237 -5.2904 16 1 0.9194 0.5152 -5.6513 17 1 1.4886 -1.7320 -6.3617 18 1 -0.5670 -1.3311 -5.1388 19 6 2.0535 -2.2457 -0.6709 20 1 2.5751 -2.9443 -1.3250 21 35 0.2306 -2.8545 -0.2571 22 1 -0.3633 0.7860 0.6620 23 1 -0.3632 0.1803 -1.0117 24 1 -0.3633 -0.9664 0.3497 25 1 3.1466 1.4188 0.1212 26 1 1.8104 1.9158 -0.9445 27 1 1.6135 1.9891 0.8231 28 1 4.8876 -1.9630 -0.3046 29 1 4.5914 -0.5088 0.6977 30 1 4.0623 -0.8596 -2.1547 31 1 3.7756 0.5982 -1.1545 32 1 3.0763 -2.4784 -4.4416 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085398913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -17.118053 kcal Electronic energy + Delta-G solvation = -18641.038630 eV Core-core repulsion = 15694.677610 eV Total energy + Delta-G solvation = -2946.361020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 363.941 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66533 -37.17718 -33.05118 -32.74726 -30.49064 -29.79224 -27.50374 -27.43183 -26.20104 -24.16842 -23.17950 -20.20563 -19.35724 -17.60251 -16.16039 -15.59902 -14.98540 -14.75063 -14.49403 -13.85611 -13.39735 -12.78576 -12.30928 -12.22641 -12.12740 -11.75008 -11.69797 -11.20456 -11.09107 -11.00338 -10.84644 -10.72353 -10.61085 -10.26903 -10.04699 -9.82997 -9.68836 -9.34118 -9.16926 -8.98395 -8.61313 -8.55312 -8.11379 -6.31703 -4.38022 1.85098 2.38703 2.55212 3.19723 3.25282 3.28486 4.19254 4.29305 4.68248 4.87222 5.09516 5.19899 5.53254 5.59439 5.74589 5.89354 5.94470 6.08277 6.14780 6.26782 6.35017 6.52077 6.57293 6.64600 6.73946 6.76747 6.98719 7.06904 7.38933 7.71701 7.87218 8.02442 8.63554 9.29140 10.74425 Molecular weight = 363.94amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.006943 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.503402 B = 4031.841170 C = 4182.889075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.127 4.127 4 C 0.392 3.608 5 O -0.434 6.434 6 C -0.101 4.101 7 Br -0.123 7.123 8 C -0.095 4.095 9 C -0.134 4.134 10 C 0.125 3.875 11 C -0.488 4.488 12 H 0.074 0.926 13 C 0.077 3.923 14 N -0.880 5.880 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.017 4.017 20 H 0.138 0.862 21 Br -0.162 7.162 22 H 0.036 0.964 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -0.197 5.237 5.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 C -0.184 4.184 4 C 0.264 3.736 5 O -0.304 6.304 6 C -0.180 4.180 7 Br -0.040 7.040 8 C -0.135 4.135 9 C -0.173 4.173 10 C 0.123 3.877 11 C -0.524 4.524 12 H 0.092 0.908 13 C -0.128 4.128 14 N -0.516 5.516 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.114 4.114 20 H 0.156 0.844 21 Br -0.079 7.079 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.478 -0.950 6.331 6.420 hybrid contribution 0.088 0.204 -1.084 1.107 sum 0.566 -0.746 5.247 5.330 Atomic orbital electron populations 1.22489 0.92000 1.03261 1.03564 1.22317 0.98090 0.96510 0.94493 1.21783 1.00343 0.93962 1.02328 1.25624 0.74869 0.83274 0.89853 1.90316 1.51521 1.68289 1.20284 1.28363 1.01638 0.92235 0.95771 1.97263 1.96432 1.46166 1.64178 1.23194 0.93202 0.99030 0.98036 1.23068 0.98373 0.98855 0.97003 1.20361 0.91810 0.84566 0.91004 1.20409 1.14506 1.27335 0.90191 0.90811 1.24913 0.94541 0.94274 0.99032 1.69800 1.24735 1.27576 1.29511 0.86559 0.80244 0.78392 0.82442 1.20044 1.21206 1.19833 1.27354 0.84741 1.06251 0.93031 0.84404 1.97014 1.26632 1.89718 1.94563 0.94475 0.89759 0.90036 0.92500 0.90606 0.93416 0.90170 0.91671 0.87682 0.91630 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 7.91 37.16 0.29 -2.60 16 2 C -0.11 -2.10 0.54 -153.35 -0.08 -2.19 16 3 C -0.13 -2.11 7.64 37.16 0.28 -1.83 16 4 C 0.39 7.65 4.84 -26.88 -0.13 7.52 16 5 O -0.43 -9.15 17.91 6.00 0.11 -9.04 16 6 C -0.10 -1.89 1.62 -84.94 -0.14 -2.03 16 7 Br -0.12 -2.18 33.90 -68.01 -2.31 -4.49 16 8 C -0.10 -1.65 6.08 -22.61 -0.14 -1.79 16 9 C -0.13 -2.53 5.31 -24.29 -0.13 -2.66 16 10 C 0.12 2.51 0.32 -150.30 -0.05 2.46 16 11 C -0.49 -10.82 7.99 -34.44 -0.28 -11.09 16 12 H 0.07 1.64 6.15 -52.48 -0.32 1.32 16 13 C 0.08 1.76 5.35 -17.82 -0.10 1.66 16 14 N -0.88 -20.61 10.46 55.43 0.58 -20.03 16 15 Si 0.90 18.69 29.54 -169.99 -5.02 13.67 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.02 -0.33 3.10 -22.43 -0.07 -0.40 16 20 H 0.14 3.06 7.26 -51.93 -0.38 2.69 16 21 Br -0.16 -3.19 28.47 -68.01 -1.94 -5.12 16 22 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 23 H 0.08 1.59 5.79 -51.93 -0.30 1.29 16 24 H 0.08 1.56 4.23 -51.93 -0.22 1.34 16 25 H 0.06 0.89 6.05 -51.93 -0.31 0.58 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 28 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.06 1.03 8.06 -51.93 -0.42 0.62 16 30 H 0.10 2.20 6.39 -51.93 -0.33 1.87 16 31 H 0.07 1.15 5.43 -51.93 -0.28 0.86 16 32 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 LS Contribution 282.22 15.07 4.25 4.25 Total: -1.00 -23.19 282.22 -8.23 -31.42 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.38 Total: 2.27 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.53 Total: -12.93 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.58 Total: -20.03 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.11 Total: -9.04 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 35 Polarization: -5.37 SS G_CDS: -4.24 Total: -9.61 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -23.19 -8.23 -31.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.301 kcal (2) G-P(sol) polarization free energy of solvation -23.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds