Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 110.40444 * 2 1 4 4 C 1.52172 * 110.35726 * 122.27050 * 2 1 3 5 5 O 1.20762 * 127.33116 * 298.89387 * 4 2 1 6 6 C 1.53526 * 105.33913 * 119.15161 * 4 2 1 7 7 Br 1.96601 * 115.84004 * 198.91650 * 6 4 2 8 8 C 1.58905 * 103.88659 * 69.87150 * 6 4 2 9 9 C 1.54607 * 104.29795 * 289.17938 * 8 6 4 10 10 C 1.55954 * 110.36070 * 237.71905 * 2 1 3 11 11 C 1.50700 * 116.10631 * 40.87490 * 10 2 1 12 12 H 1.08005 * 119.99550 * 359.97438 * 11 10 2 13 13 C 1.37875 * 120.00423 * 179.97438 * 11 10 2 14 14 N 1.31519 * 119.99597 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47039 * 60.00328 * 15 13 11 17 17 H 1.48502 * 109.46927 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47219 * 299.99751 * 15 13 11 19 19 C 1.56922 * 100.84501 * 325.95607 * 6 4 2 20 20 H 1.08994 * 112.08645 * 170.05588 * 19 6 4 21 21 Br 1.96596 * 112.08886 * 296.74445 * 19 6 4 22 22 H 1.08994 * 109.47230 * 319.89529 * 1 2 3 23 23 H 1.08995 * 109.46713 * 79.89739 * 1 2 3 24 24 H 1.09002 * 109.46869 * 199.89190 * 1 2 3 25 25 H 1.08999 * 109.47176 * 173.22505 * 3 2 1 26 26 H 1.09004 * 109.46874 * 293.21867 * 3 2 1 27 27 H 1.09001 * 109.47465 * 53.22408 * 3 2 1 28 28 H 1.09008 * 110.21058 * 170.67077 * 8 6 4 29 29 H 1.08998 * 110.89807 * 48.03385 * 8 6 4 30 30 H 1.08994 * 110.43903 * 241.99135 * 9 8 6 31 31 H 1.09000 * 110.43613 * 119.47655 * 9 8 6 32 32 H 0.96999 * 119.99756 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0635 1.4340 0.0000 4 6 2.0594 -0.7617 1.2063 5 8 1.8792 -0.5036 2.3722 6 6 2.8769 -1.9244 0.6257 7 35 3.2228 -3.4237 1.8494 8 6 4.1519 -1.2164 -0.0053 9 6 3.6020 -0.4740 -1.2450 10 6 2.0727 -0.7809 -1.2361 11 6 1.3441 -0.5543 -2.5357 12 1 0.4987 0.1170 -2.5709 13 6 1.7566 -1.2040 -3.6797 14 7 2.7863 -2.0211 -3.6369 15 14 0.8529 -0.9237 -5.2904 16 1 0.9194 0.5152 -5.6513 17 1 1.4886 -1.7320 -6.3617 18 1 -0.5670 -1.3311 -5.1388 19 6 2.0535 -2.2457 -0.6709 20 1 2.5751 -2.9443 -1.3250 21 35 0.2306 -2.8545 -0.2571 22 1 -0.3633 0.7860 0.6620 23 1 -0.3632 0.1803 -1.0117 24 1 -0.3633 -0.9664 0.3497 25 1 3.1466 1.4188 0.1212 26 1 1.8104 1.9158 -0.9445 27 1 1.6135 1.9891 0.8231 28 1 4.8876 -1.9630 -0.3046 29 1 4.5914 -0.5088 0.6977 30 1 4.0623 -0.8596 -2.1547 31 1 3.7756 0.5982 -1.1545 32 1 3.0763 -2.4784 -4.4416 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085398913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -26.242824 kcal Electronic energy + Delta-G solvation = -18641.434310 eV Core-core repulsion = 15694.677610 eV Total energy + Delta-G solvation = -2946.756700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 363.941 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.18941 -38.75265 -34.58434 -34.38365 -32.01364 -31.29156 -29.11677 -28.92436 -27.64151 -25.80689 -24.68926 -21.69083 -20.93925 -19.18574 -17.75642 -17.14880 -16.54197 -16.38819 -16.03009 -15.32532 -14.97200 -14.29942 -13.87979 -13.73336 -13.63399 -13.30132 -13.10693 -12.82161 -12.64357 -12.56714 -12.35739 -12.20430 -12.17424 -11.86608 -11.56455 -11.29830 -11.24547 -10.83974 -10.71399 -10.60817 -10.27265 -10.09119 -9.67019 -8.05572 -6.13770 0.36369 0.85356 0.97745 1.52476 1.56998 1.59715 2.49616 2.76562 3.13706 3.23177 3.57513 3.67147 4.04933 4.16115 4.34911 4.40220 4.52304 4.58286 4.74576 4.91667 4.97055 4.99346 5.10128 5.19502 5.25585 5.33097 5.50048 5.59473 5.77630 6.03325 6.33260 6.36180 6.89208 7.53976 8.98731 Molecular weight = 363.94amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.006943 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.503402 B = 4031.841170 C = 4182.889075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.126 4.126 4 C 0.395 3.605 5 O -0.449 6.449 6 C -0.102 4.102 7 Br -0.112 7.112 8 C -0.089 4.089 9 C -0.129 4.129 10 C 0.116 3.884 11 C -0.489 4.489 12 H 0.071 0.929 13 C 0.045 3.955 14 N -0.895 5.895 15 Si 0.936 3.064 16 H -0.272 1.272 17 H -0.292 1.292 18 H -0.280 1.280 19 C -0.016 4.016 20 H 0.116 0.884 21 Br -0.162 7.162 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 0.565 5.828 5.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.114 4.114 3 C -0.183 4.183 4 C 0.268 3.732 5 O -0.321 6.321 6 C -0.182 4.182 7 Br -0.029 7.029 8 C -0.128 4.128 9 C -0.168 4.168 10 C 0.114 3.886 11 C -0.526 4.526 12 H 0.089 0.911 13 C -0.157 4.157 14 N -0.532 5.532 15 Si 0.764 3.236 16 H -0.197 1.197 17 H -0.218 1.218 18 H -0.205 1.205 19 C -0.113 4.113 20 H 0.134 0.866 21 Br -0.079 7.079 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.710 -0.183 6.919 6.958 hybrid contribution -0.018 -0.067 -1.247 1.249 sum 0.692 -0.250 5.672 5.719 Atomic orbital electron populations 1.22444 0.91982 1.03319 1.03445 1.22326 0.98150 0.97572 0.93346 1.21791 1.01013 0.92489 1.02968 1.25717 0.74491 0.83303 0.89691 1.90314 1.52146 1.68801 1.20819 1.28346 1.02085 0.92445 0.95312 1.97268 1.96334 1.45691 1.63639 1.23193 0.92631 0.99347 0.97614 1.22963 0.97231 0.99828 0.96791 1.20351 0.92626 0.84788 0.90820 1.20582 1.14285 1.26727 0.91045 0.91142 1.25332 0.95102 0.94571 1.00708 1.69886 1.25542 1.28305 1.29486 0.85939 0.78991 0.78183 0.80506 1.19672 1.21845 1.20525 1.27188 0.84824 1.05678 0.93638 0.86554 1.97009 1.26604 1.89837 1.94483 0.93104 0.90359 0.90846 0.91503 0.90338 0.92316 0.89518 0.89672 0.89821 0.90155 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 7.91 71.98 0.57 -4.92 16 2 C -0.11 -3.99 0.54 -51.43 -0.03 -4.02 16 3 C -0.13 -3.85 7.64 71.98 0.55 -3.30 16 4 C 0.39 14.63 4.84 30.50 0.15 14.78 16 5 O -0.45 -17.99 17.91 -1.46 -0.03 -18.01 16 6 C -0.10 -3.68 1.62 -7.12 -0.01 -3.69 16 7 Br -0.11 -3.80 33.90 -20.37 -0.69 -4.49 16 8 C -0.09 -2.89 6.08 33.27 0.20 -2.68 16 9 C -0.13 -4.67 5.31 32.18 0.17 -4.50 16 10 C 0.12 4.54 0.32 -49.46 -0.02 4.52 16 11 C -0.49 -21.30 7.99 25.60 0.20 -21.09 16 12 H 0.07 3.07 6.15 -2.91 -0.02 3.05 16 13 C 0.05 2.04 5.35 84.65 0.45 2.49 16 14 N -0.90 -41.85 10.46 21.45 0.22 -41.62 16 15 Si 0.94 37.99 29.54 68.60 2.03 40.01 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 19 C -0.02 -0.63 3.10 33.38 0.10 -0.53 16 20 H 0.12 5.15 7.26 -2.39 -0.02 5.14 16 21 Br -0.16 -6.25 28.47 -20.37 -0.58 -6.83 16 22 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 23 H 0.08 2.86 5.79 -2.39 -0.01 2.85 16 24 H 0.07 2.72 4.23 -2.39 -0.01 2.71 16 25 H 0.07 1.90 6.05 -2.39 -0.01 1.88 16 26 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 28 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 29 H 0.08 2.45 8.06 -2.39 -0.02 2.43 16 30 H 0.08 3.43 6.39 -2.39 -0.02 3.42 16 31 H 0.08 2.63 5.43 -2.39 -0.01 2.61 16 32 H 0.26 12.17 8.31 -92.71 -0.77 11.40 16 Total: -1.00 -46.82 282.22 4.45 -42.37 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.15 Total: 11.51 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 2.35 Total: -22.93 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.22 Total: -41.62 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.03 Total: -18.01 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 35 Polarization: -10.05 SS G_CDS: -1.27 Total: -11.32 kcal Total: -46.82 4.45 -42.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.126 kcal (2) G-P(sol) polarization free energy of solvation -46.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds