Wall clock time and date at job start Tue Mar 31 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47477 * 300.00718 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00501 * 3 2 1 7 7 C 1.39936 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00330 * 186.32989 * 7 2 1 9 9 C 1.41442 * 120.00007 * 6.32643 * 7 2 1 10 10 C 1.40777 * 120.18018 * 213.27767 * 9 7 2 11 11 C 1.37711 * 120.04309 * 179.70231 * 10 9 7 12 12 C 1.38380 * 120.40942 * 0.55653 * 11 10 9 13 13 C 1.39875 * 120.35466 * 359.43801 * 12 11 10 14 14 C 1.47893 * 120.02400 * 180.29781 * 13 12 11 15 15 O 1.21539 * 119.99937 * 154.79767 * 14 13 12 16 16 N 1.34775 * 119.99795 * 334.80003 * 14 13 12 17 17 C 1.47421 * 125.64995 * 4.63417 * 16 14 13 18 18 C 1.54910 * 104.83445 * 204.09126 * 17 16 14 19 19 C 1.55161 * 101.58147 * 322.99425 * 18 17 16 20 20 C 1.47020 * 125.64545 * 184.33064 * 16 14 13 21 21 H 1.08997 * 109.88324 * 59.55698 * 20 16 14 22 22 C 1.53003 * 109.88258 * 298.39075 * 20 16 14 23 23 C 1.50702 * 109.47223 * 95.08240 * 22 20 16 24 24 O 1.21261 * 119.99607 * 7.23163 * 23 22 20 25 25 C 1.47166 * 120.00191 * 187.23259 * 23 22 20 26 26 C 1.39843 * 120.17111 * 359.72582 * 25 23 22 27 27 C 1.37890 * 119.82337 * 179.76777 * 26 25 23 28 28 C 1.38402 * 120.17145 * 0.48394 * 27 26 25 29 29 C 1.38397 * 120.34907 * 359.79272 * 28 27 26 30 30 C 1.37893 * 120.17590 * 359.94780 * 29 28 27 31 31 C 1.39034 * 119.95517 * 0.28493 * 13 12 11 32 32 H 0.96998 * 119.99792 * 359.97438 * 1 2 3 33 33 H 1.08003 * 119.97827 * 359.97379 * 10 9 7 34 34 H 1.08001 * 119.79740 * 180.29111 * 11 10 9 35 35 H 1.08000 * 119.81828 * 179.72043 * 12 11 10 36 36 H 1.08996 * 110.36951 * 322.93483 * 17 16 14 37 37 H 1.09004 * 110.36797 * 85.14748 * 17 16 14 38 38 H 1.09000 * 111.00396 * 81.06519 * 18 17 16 39 39 H 1.09003 * 111.00407 * 204.88029 * 18 17 16 40 40 H 1.08999 * 110.72009 * 153.86583 * 19 18 17 41 41 H 1.09005 * 110.71418 * 276.96039 * 19 18 17 42 42 H 1.09001 * 109.47402 * 215.08252 * 22 20 16 43 43 H 1.09000 * 109.47119 * 335.08387 * 22 20 16 44 44 H 1.08003 * 120.08848 * 0.02562 * 26 25 23 45 45 H 1.07998 * 119.91489 * 180.25217 * 27 26 25 46 46 H 1.07997 * 119.82529 * 179.76037 * 28 27 26 47 47 H 1.08006 * 119.91910 * 179.97438 * 29 28 27 48 48 H 1.08001 * 120.09258 * 180.02562 * 30 29 28 49 49 H 1.07997 * 120.20600 * 180.02562 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0830 -1.2148 0.1026 9 6 1.3073 -2.4330 -0.1361 10 6 1.7714 -3.5914 0.5156 11 6 1.0835 -4.7774 0.3867 12 6 -0.0592 -4.8434 -0.3910 13 6 -0.5354 -3.7029 -1.0459 14 6 -1.7611 -3.7802 -1.8698 15 8 -2.4309 -2.7836 -2.0577 16 7 -2.1353 -4.9558 -2.4123 17 6 -1.4745 -6.2545 -2.1883 18 6 -1.8369 -7.1036 -3.4323 19 6 -3.2961 -6.6514 -3.7038 20 6 -3.2738 -5.1566 -3.3205 21 1 -3.1457 -4.5481 -4.2157 22 6 -4.5768 -4.7786 -2.6130 23 6 -4.9348 -3.3535 -2.9474 24 8 -4.2944 -2.7466 -3.7792 25 6 -6.0617 -2.6982 -2.2643 26 6 -6.8062 -3.3966 -1.3085 27 6 -7.8576 -2.7741 -0.6693 28 6 -8.1830 -1.4649 -0.9788 29 6 -7.4545 -0.7690 -1.9277 30 6 -6.3970 -1.3757 -2.5718 31 6 0.1442 -2.4963 -0.9215 32 1 -0.4850 0.8400 0.0004 33 1 2.6650 -3.5488 1.1206 34 1 1.4405 -5.6625 0.8922 35 1 -0.5887 -5.7796 -0.4891 36 1 -0.3946 -6.1239 -2.1196 37 1 -1.8575 -6.7237 -1.2821 38 1 -1.1891 -6.8594 -4.2742 39 1 -1.7932 -8.1687 -3.2045 40 1 -3.5496 -6.7784 -4.7563 41 1 -3.9939 -7.2004 -3.0715 42 1 -5.3759 -5.4414 -2.9449 43 1 -4.4468 -4.8774 -1.5353 44 1 -6.5558 -4.4194 -1.0685 45 1 -8.4311 -3.3107 0.0720 46 1 -9.0099 -0.9841 -0.4776 47 1 -7.7147 0.2523 -2.1642 48 1 -5.8292 -0.8312 -3.3118 49 1 -0.2202 -1.6131 -1.4250 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085482947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:20 Heat of formation + Delta-G solvation = -12.720280 kcal Electronic energy + Delta-G solvation = -32415.160632 eV Core-core repulsion = 28272.096236 eV Total energy + Delta-G solvation = -4143.064396 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.37204 -39.40021 -37.99139 -37.32587 -36.53376 -33.68552 -32.35703 -31.53885 -31.01125 -30.80795 -29.64620 -29.39107 -26.83074 -25.23465 -24.15625 -23.25439 -22.39297 -21.75864 -20.89394 -20.46356 -19.64750 -18.67218 -17.57146 -17.14863 -16.47195 -15.83265 -15.55409 -15.48692 -15.28211 -14.80954 -14.60217 -14.49302 -14.27129 -13.92946 -13.87910 -13.54142 -13.35355 -13.08419 -12.89067 -12.75021 -12.68653 -12.52576 -12.17680 -12.02308 -11.73420 -11.62406 -11.48467 -11.35944 -11.16755 -11.12233 -11.11658 -10.88509 -10.71548 -10.56508 -10.24392 -9.95462 -9.58044 -9.41487 -9.22148 -9.04278 -8.96086 -8.85643 -8.20093 -7.57533 -7.37494 -6.64503 -4.38946 0.77894 1.33141 2.30177 2.68097 2.84620 3.12359 3.15847 3.17331 3.44669 3.82318 3.83802 3.99451 4.13706 4.54400 4.65362 4.70377 4.75770 4.85703 4.86009 4.97485 5.13390 5.28237 5.32647 5.37933 5.41551 5.46468 5.56628 5.57872 5.60605 5.70634 5.76753 5.85053 5.87956 5.93297 5.97922 6.11882 6.13955 6.26530 6.31651 6.32390 6.36556 6.45687 6.66413 6.83624 6.84604 7.04836 7.07122 7.28042 7.43126 7.70672 7.83289 7.89231 7.94948 8.12894 8.22802 8.55895 8.87995 8.88930 9.00963 10.30140 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.007603 B = 0.003576 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.074721 B = 7828.619413 C =10511.024357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.468 4.468 8 H 0.079 0.921 9 C 0.100 3.900 10 C -0.202 4.202 11 C -0.106 4.106 12 C -0.223 4.223 13 C -0.125 4.125 14 C 0.574 3.426 15 O -0.523 6.523 16 N -0.619 5.619 17 C 0.096 3.904 18 C -0.136 4.136 19 C -0.127 4.127 20 C 0.138 3.862 21 H 0.089 0.911 22 C -0.170 4.170 23 C 0.400 3.600 24 O -0.424 6.424 25 C -0.152 4.152 26 C -0.079 4.079 27 C -0.135 4.135 28 C -0.098 4.098 29 C -0.133 4.133 30 C -0.061 4.061 31 C -0.084 4.084 32 H 0.281 0.719 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.132 0.868 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 -11.392 -4.320 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.498 4.498 8 H 0.097 0.903 9 C 0.098 3.902 10 C -0.222 4.222 11 C -0.124 4.124 12 C -0.242 4.242 13 C -0.128 4.128 14 C 0.366 3.634 15 O -0.399 6.399 16 N -0.355 5.355 17 C -0.026 4.026 18 C -0.175 4.175 19 C -0.165 4.165 20 C 0.034 3.966 21 H 0.107 0.893 22 C -0.209 4.209 23 C 0.275 3.725 24 O -0.296 6.296 25 C -0.153 4.153 26 C -0.097 4.097 27 C -0.153 4.153 28 C -0.116 4.116 29 C -0.151 4.151 30 C -0.079 4.079 31 C -0.104 4.104 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.150 0.850 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.072 -10.245 -4.830 18.064 hybrid contribution 0.266 0.744 0.446 0.907 sum -13.806 -9.501 -4.384 17.324 Atomic orbital electron populations 1.69769 1.07231 1.29235 1.36001 1.25908 0.94886 1.01229 0.92631 0.86207 0.80581 0.81045 0.78539 1.18517 1.19798 1.19978 1.19548 0.95043 0.90010 1.45185 0.90300 1.17605 0.91547 0.92461 0.88614 1.21221 1.02481 0.94126 1.04381 1.20482 0.96087 0.96692 0.99182 1.21016 1.00185 0.96853 1.06183 1.19461 0.95580 0.95874 1.01900 1.18653 0.85314 0.80769 0.78636 1.90774 1.54657 1.34422 1.60041 1.48501 1.30531 1.07829 1.48671 1.22688 0.99742 0.83456 0.96755 1.22852 0.96177 0.99780 0.98647 1.22723 0.97649 0.94088 1.01999 1.21447 0.85197 0.96272 0.93646 0.89265 1.22414 0.98908 0.96049 1.03510 1.22069 0.81090 0.89049 0.80328 1.90504 1.46164 1.65028 1.27906 1.20637 0.98637 0.95794 1.00222 1.21427 0.94219 0.99773 0.94321 1.21096 0.98203 0.95444 1.00549 1.21354 0.99004 0.94596 0.96661 1.21153 0.96256 1.00226 0.97446 1.21467 0.95072 0.93605 0.97762 1.21605 0.96112 0.94854 0.97824 0.90761 0.88621 0.88914 0.87374 0.88709 0.91680 0.90598 0.90086 0.90234 0.90616 0.88236 0.88379 0.85398 0.85659 0.85860 0.85602 0.84960 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.13 10.93 55.55 0.61 -21.53 16 2 C 0.07 1.85 5.30 -17.34 -0.09 1.76 16 3 Si 0.91 19.59 29.56 -169.99 -5.03 14.56 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.47 -12.63 9.05 -37.73 -0.34 -12.98 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 9 C 0.10 2.70 5.51 -106.87 -0.59 2.11 16 10 C -0.20 -4.85 9.78 -38.82 -0.38 -5.23 16 11 C -0.11 -2.26 10.01 -39.72 -0.40 -2.66 16 12 C -0.22 -4.68 7.97 -38.92 -0.31 -4.99 16 13 C -0.12 -3.01 5.74 -105.04 -0.60 -3.61 16 14 C 0.57 12.98 7.49 -12.31 -0.09 12.89 16 15 O -0.52 -13.50 13.43 -16.00 -0.21 -13.72 16 16 N -0.62 -10.68 2.98 -164.10 -0.49 -11.17 16 17 C 0.10 1.29 5.01 -2.53 -0.01 1.28 16 18 C -0.14 -1.35 7.09 -24.58 -0.17 -1.53 16 19 C -0.13 -1.23 6.33 -24.89 -0.16 -1.38 16 20 C 0.14 1.98 2.93 -66.95 -0.20 1.79 16 21 H 0.09 1.50 6.73 -51.93 -0.35 1.15 16 22 C -0.17 -2.26 3.90 -27.88 -0.11 -2.37 16 23 C 0.40 6.65 5.66 -30.68 -0.17 6.47 16 24 O -0.42 -8.60 13.70 -15.76 -0.22 -8.82 16 25 C -0.15 -2.28 5.87 -105.07 -0.62 -2.90 16 26 C -0.08 -0.95 9.44 -39.11 -0.37 -1.32 16 27 C -0.13 -1.43 10.03 -39.65 -0.40 -1.82 16 28 C -0.10 -1.04 10.04 -39.46 -0.40 -1.43 16 29 C -0.13 -1.59 10.03 -39.65 -0.40 -1.99 16 30 C -0.06 -0.90 9.60 -39.10 -0.38 -1.27 16 31 C -0.08 -2.29 8.17 -38.44 -0.31 -2.60 16 32 H 0.28 7.25 8.30 -40.82 -0.34 6.91 16 33 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.11 1.89 4.31 -52.49 -0.23 1.66 16 36 H 0.09 1.39 5.95 -51.93 -0.31 1.08 16 37 H 0.07 0.79 7.37 -51.93 -0.38 0.41 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.60 7.74 -51.93 -0.40 0.19 16 42 H 0.10 0.92 7.72 -51.93 -0.40 0.52 16 43 H 0.10 1.36 7.64 -51.93 -0.40 0.96 16 44 H 0.13 1.24 6.92 -52.48 -0.36 0.87 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 48 H 0.13 2.04 7.65 -52.49 -0.40 1.64 16 49 H 0.13 3.90 6.20 -52.49 -0.33 3.57 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -33.83 395.96 -12.35 -46.18 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.49 Total: 10.33 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -6.49 Total: -21.80 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.12 Total: -32.69 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.43 Total: -22.54 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.83 -12.35 -46.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085482947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.460 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds