Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47477 * 300.00718 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00501 * 3 2 1 7 7 C 1.39936 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00330 * 186.32989 * 7 2 1 9 9 C 1.41442 * 120.00007 * 6.32643 * 7 2 1 10 10 C 1.40777 * 120.18018 * 213.27767 * 9 7 2 11 11 C 1.37711 * 120.04309 * 179.70231 * 10 9 7 12 12 C 1.38380 * 120.40942 * 0.55653 * 11 10 9 13 13 C 1.39875 * 120.35466 * 359.43801 * 12 11 10 14 14 C 1.47893 * 120.02400 * 180.29781 * 13 12 11 15 15 O 1.21539 * 119.99937 * 154.79767 * 14 13 12 16 16 N 1.34775 * 119.99795 * 334.80003 * 14 13 12 17 17 C 1.47421 * 125.64995 * 4.63417 * 16 14 13 18 18 C 1.54910 * 104.83445 * 204.09126 * 17 16 14 19 19 C 1.55161 * 101.58147 * 322.99425 * 18 17 16 20 20 C 1.47020 * 125.64545 * 184.33064 * 16 14 13 21 21 H 1.08997 * 109.88324 * 59.55698 * 20 16 14 22 22 C 1.53003 * 109.88258 * 298.39075 * 20 16 14 23 23 C 1.50702 * 109.47223 * 95.08240 * 22 20 16 24 24 O 1.21261 * 119.99607 * 7.23163 * 23 22 20 25 25 C 1.47166 * 120.00191 * 187.23259 * 23 22 20 26 26 C 1.39843 * 120.17111 * 359.72582 * 25 23 22 27 27 C 1.37890 * 119.82337 * 179.76777 * 26 25 23 28 28 C 1.38402 * 120.17145 * 0.48394 * 27 26 25 29 29 C 1.38397 * 120.34907 * 359.79272 * 28 27 26 30 30 C 1.37893 * 120.17590 * 359.94780 * 29 28 27 31 31 C 1.39034 * 119.95517 * 0.28493 * 13 12 11 32 32 H 0.96998 * 119.99792 * 359.97438 * 1 2 3 33 33 H 1.08003 * 119.97827 * 359.97379 * 10 9 7 34 34 H 1.08001 * 119.79740 * 180.29111 * 11 10 9 35 35 H 1.08000 * 119.81828 * 179.72043 * 12 11 10 36 36 H 1.08996 * 110.36951 * 322.93483 * 17 16 14 37 37 H 1.09004 * 110.36797 * 85.14748 * 17 16 14 38 38 H 1.09000 * 111.00396 * 81.06519 * 18 17 16 39 39 H 1.09003 * 111.00407 * 204.88029 * 18 17 16 40 40 H 1.08999 * 110.72009 * 153.86583 * 19 18 17 41 41 H 1.09005 * 110.71418 * 276.96039 * 19 18 17 42 42 H 1.09001 * 109.47402 * 215.08252 * 22 20 16 43 43 H 1.09000 * 109.47119 * 335.08387 * 22 20 16 44 44 H 1.08003 * 120.08848 * 0.02562 * 26 25 23 45 45 H 1.07998 * 119.91489 * 180.25217 * 27 26 25 46 46 H 1.07997 * 119.82529 * 179.76037 * 28 27 26 47 47 H 1.08006 * 119.91910 * 179.97438 * 29 28 27 48 48 H 1.08001 * 120.09258 * 180.02562 * 30 29 28 49 49 H 1.07997 * 120.20600 * 180.02562 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8836 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0830 -1.2148 0.1026 9 6 1.3073 -2.4330 -0.1361 10 6 1.7714 -3.5914 0.5156 11 6 1.0835 -4.7774 0.3867 12 6 -0.0592 -4.8434 -0.3910 13 6 -0.5354 -3.7029 -1.0459 14 6 -1.7611 -3.7802 -1.8698 15 8 -2.4309 -2.7836 -2.0577 16 7 -2.1353 -4.9558 -2.4123 17 6 -1.4745 -6.2545 -2.1883 18 6 -1.8369 -7.1036 -3.4323 19 6 -3.2961 -6.6514 -3.7038 20 6 -3.2738 -5.1566 -3.3205 21 1 -3.1457 -4.5481 -4.2157 22 6 -4.5768 -4.7786 -2.6130 23 6 -4.9348 -3.3535 -2.9474 24 8 -4.2944 -2.7466 -3.7792 25 6 -6.0617 -2.6982 -2.2643 26 6 -6.8062 -3.3966 -1.3085 27 6 -7.8576 -2.7741 -0.6693 28 6 -8.1830 -1.4649 -0.9788 29 6 -7.4545 -0.7690 -1.9277 30 6 -6.3970 -1.3757 -2.5718 31 6 0.1442 -2.4963 -0.9215 32 1 -0.4850 0.8400 0.0004 33 1 2.6650 -3.5488 1.1206 34 1 1.4405 -5.6625 0.8922 35 1 -0.5887 -5.7796 -0.4891 36 1 -0.3946 -6.1239 -2.1196 37 1 -1.8575 -6.7237 -1.2821 38 1 -1.1891 -6.8594 -4.2742 39 1 -1.7932 -8.1687 -3.2045 40 1 -3.5496 -6.7784 -4.7563 41 1 -3.9939 -7.2004 -3.0715 42 1 -5.3759 -5.4414 -2.9449 43 1 -4.4468 -4.8774 -1.5353 44 1 -6.5558 -4.4194 -1.0685 45 1 -8.4311 -3.3107 0.0720 46 1 -9.0099 -0.9841 -0.4776 47 1 -7.7147 0.2523 -2.1642 48 1 -5.8292 -0.8312 -3.3118 49 1 -0.2202 -1.6131 -1.4250 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085482947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = -30.569817 kcal Electronic energy + Delta-G solvation = -32415.934646 eV Core-core repulsion = 28272.096236 eV Total energy + Delta-G solvation = -4143.838410 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.67677 -40.65753 -39.32231 -38.78463 -38.16306 -35.59368 -33.62034 -32.82039 -31.98603 -31.82681 -31.38763 -31.18795 -27.97771 -27.09701 -25.49329 -24.44744 -23.41715 -23.07862 -22.59250 -21.71363 -20.86293 -20.15359 -19.25203 -18.33593 -17.65037 -17.47654 -17.09854 -16.65834 -16.60386 -16.46658 -16.03723 -15.80614 -15.41193 -15.29977 -15.05050 -14.91652 -14.66646 -14.46244 -14.36361 -14.19540 -13.78417 -13.74788 -13.58142 -13.48421 -13.21260 -12.94543 -12.87326 -12.68673 -12.59375 -12.49582 -12.32248 -12.10687 -12.04208 -11.90861 -11.73617 -11.55349 -11.33301 -11.15889 -10.64014 -10.60094 -9.98624 -9.93910 -9.67536 -9.39794 -9.29163 -8.59570 -6.44390 -0.25669 0.38500 0.43932 0.98556 1.31663 1.41699 1.48173 1.57053 2.00166 2.13984 2.18399 2.78673 2.82544 3.06665 3.54923 3.64061 3.67830 3.82865 3.90343 3.99374 4.05585 4.14476 4.21270 4.28730 4.33543 4.44092 4.46044 4.47601 4.54203 4.63461 4.67456 4.74649 4.86585 4.88535 4.94397 5.00611 5.02521 5.07687 5.11688 5.17594 5.18318 5.29247 5.34749 5.40671 5.44730 5.47459 5.49830 5.59641 5.84136 5.93475 5.94194 6.03723 6.28545 6.50454 6.65082 6.70574 6.88431 6.93876 7.34081 8.36449 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.007603 B = 0.003576 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.074721 B = 7828.619413 C =10511.024357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.023 3.977 3 Si 0.985 3.015 4 H -0.248 1.248 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.205 4.205 11 C -0.102 4.102 12 C -0.197 4.197 13 C -0.137 4.137 14 C 0.563 3.437 15 O -0.572 6.572 16 N -0.612 5.612 17 C 0.081 3.919 18 C -0.125 4.125 19 C -0.112 4.112 20 C 0.127 3.873 21 H 0.052 0.948 22 C -0.163 4.163 23 C 0.389 3.611 24 O -0.482 6.482 25 C -0.187 4.187 26 C -0.077 4.077 27 C -0.132 4.132 28 C -0.091 4.091 29 C -0.141 4.141 30 C -0.095 4.095 31 C -0.123 4.123 32 H 0.280 0.720 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.098 0.902 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.143 0.857 48 H 0.102 0.898 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -16.130 -2.494 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.171 1.171 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.534 4.534 8 H 0.101 0.899 9 C 0.065 3.935 10 C -0.225 4.225 11 C -0.119 4.119 12 C -0.216 4.216 13 C -0.140 4.140 14 C 0.354 3.646 15 O -0.451 6.451 16 N -0.345 5.345 17 C -0.040 4.040 18 C -0.162 4.162 19 C -0.149 4.149 20 C 0.024 3.976 21 H 0.070 0.930 22 C -0.200 4.200 23 C 0.268 3.732 24 O -0.359 6.359 25 C -0.188 4.188 26 C -0.095 4.095 27 C -0.149 4.149 28 C -0.109 4.109 29 C -0.158 4.158 30 C -0.114 4.114 31 C -0.143 4.143 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.173 0.827 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.167 0.833 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.182 0.818 46 H 0.178 0.822 47 H 0.160 0.840 48 H 0.120 0.880 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.637 -15.074 -3.004 21.927 hybrid contribution 0.652 2.004 -0.136 2.112 sum -14.985 -13.071 -3.141 20.131 Atomic orbital electron populations 1.69926 1.09105 1.29837 1.38313 1.26853 0.95511 1.04906 0.91662 0.85114 0.79600 0.76148 0.78558 1.17108 1.19963 1.18922 1.19842 0.95342 0.91106 1.47141 0.89916 1.17937 0.92066 0.93948 0.89597 1.21534 1.03023 0.94175 1.03768 1.21014 0.95262 0.97312 0.98354 1.21575 0.99554 0.97234 1.03188 1.19804 0.96008 0.95875 1.02349 1.18566 0.84888 0.81994 0.79169 1.90761 1.55918 1.36621 1.61843 1.48490 1.31250 1.07539 1.47257 1.23039 0.98848 0.82038 1.00104 1.22851 0.95829 1.01230 0.96335 1.22765 0.98410 0.89898 1.03862 1.21733 0.84634 0.99471 0.91784 0.93005 1.22463 0.99751 0.94547 1.03269 1.22876 0.80637 0.90562 0.79077 1.90480 1.48179 1.66562 1.30683 1.20787 0.99530 0.96300 1.02200 1.21764 0.93886 1.00893 0.92994 1.21609 0.97470 0.95501 1.00331 1.21832 0.99028 0.94754 0.95309 1.21412 0.95563 1.01224 0.97651 1.21495 0.96674 0.94421 0.98768 1.21327 0.98068 0.95013 0.99921 0.90983 0.87138 0.83844 0.82746 0.90085 0.88817 0.91496 0.85977 0.88417 0.87130 0.83293 0.88335 0.82643 0.81771 0.82249 0.83951 0.87971 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.12 10.93 21.82 0.24 -50.88 16 2 C 0.02 1.26 5.30 85.25 0.45 1.71 16 3 Si 0.99 42.54 29.56 68.60 2.03 44.57 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.50 -28.88 9.05 23.47 0.21 -28.67 16 8 H 0.08 4.46 7.85 -2.92 -0.02 4.44 16 9 C 0.07 3.78 5.51 -21.32 -0.12 3.66 16 10 C -0.21 -9.82 9.78 22.77 0.22 -9.60 16 11 C -0.10 -4.04 10.01 22.18 0.22 -3.82 16 12 C -0.20 -7.87 7.97 22.70 0.18 -7.69 16 13 C -0.14 -6.85 5.74 -20.13 -0.12 -6.97 16 14 C 0.56 26.75 7.49 86.80 0.65 27.40 16 15 O -0.57 -32.32 13.43 16.56 0.22 -32.10 16 16 N -0.61 -20.83 2.98 -791.37 -2.36 -23.18 16 17 C 0.08 1.88 5.01 86.86 0.44 2.31 16 18 C -0.12 -1.89 7.09 31.99 0.23 -1.67 16 19 C -0.11 -1.67 6.33 31.79 0.20 -1.47 16 20 C 0.13 3.54 2.93 45.35 0.13 3.68 16 21 H 0.05 1.86 6.73 -2.39 -0.02 1.84 16 22 C -0.16 -4.14 3.90 29.85 0.12 -4.02 16 23 C 0.39 13.87 5.66 28.03 0.16 14.03 16 24 O -0.48 -22.01 13.70 17.43 0.24 -21.77 16 25 C -0.19 -5.94 5.87 -20.15 -0.12 -6.05 16 26 C -0.08 -1.75 9.44 22.58 0.21 -1.53 16 27 C -0.13 -2.38 10.03 22.23 0.22 -2.16 16 28 C -0.09 -1.73 10.04 22.35 0.22 -1.51 16 29 C -0.14 -3.47 10.03 22.23 0.22 -3.25 16 30 C -0.10 -3.11 9.60 22.58 0.22 -2.90 16 31 C -0.12 -7.23 8.17 23.01 0.19 -7.05 16 32 H 0.28 15.83 8.30 -92.71 -0.77 15.06 16 33 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 34 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.16 4.70 4.31 -2.91 -0.01 4.68 16 36 H 0.08 2.12 5.95 -2.39 -0.01 2.11 16 37 H 0.09 1.72 7.37 -2.38 -0.02 1.70 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 0.98 7.74 -2.38 -0.02 0.96 16 42 H 0.15 2.21 7.72 -2.39 -0.02 2.19 16 43 H 0.10 2.54 7.64 -2.39 -0.02 2.52 16 44 H 0.16 2.49 6.92 -2.91 -0.02 2.47 16 45 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 48 H 0.10 3.78 7.65 -2.91 -0.02 3.76 16 49 H 0.08 5.67 6.20 -2.91 -0.02 5.65 16 Total: -1.00 -88.81 395.96 5.50 -83.31 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.98 Total: 35.60 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.15 Total: -35.55 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -2.12 Total: -74.07 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: 0.46 Total: -53.87 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -88.81 5.50 -83.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085482947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.744 kcal (2) G-P(sol) polarization free energy of solvation -88.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds