Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48497 * 109.47174 * 264.99869 * 3 2 1 5 5 H 1.48502 * 109.47082 * 24.99797 * 3 2 1 6 6 H 1.48497 * 109.47275 * 144.99640 * 3 2 1 7 7 C 1.39938 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99773 * 143.19860 * 7 2 1 9 9 C 1.41439 * 120.00002 * 323.19808 * 7 2 1 10 10 C 1.40781 * 120.17570 * 350.58281 * 9 7 2 11 11 C 1.37716 * 120.03520 * 180.25118 * 10 9 7 12 12 C 1.38365 * 120.41330 * 359.45128 * 11 10 9 13 13 C 1.39880 * 120.35901 * 0.28042 * 12 11 10 14 14 C 1.47887 * 120.02699 * 179.97438 * 13 12 11 15 15 O 1.21553 * 119.99992 * 196.88992 * 14 13 12 16 16 N 1.34772 * 120.00045 * 16.89924 * 14 13 12 17 17 C 1.47433 * 125.64842 * 2.45629 * 16 14 13 18 18 C 1.55127 * 104.72276 * 155.82297 * 17 16 14 19 19 C 1.55160 * 101.48667 * 37.29419 * 18 17 16 20 20 C 1.47020 * 125.65129 * 182.77448 * 16 14 13 21 21 H 1.09004 * 109.87687 * 300.43471 * 20 16 14 22 22 C 1.52999 * 109.88341 * 61.44119 * 20 16 14 23 23 C 1.50696 * 109.47089 * 271.42398 * 22 20 16 24 24 O 1.21250 * 120.00279 * 350.20973 * 23 22 20 25 25 C 1.47171 * 119.99590 * 170.21429 * 23 22 20 26 26 C 1.39846 * 120.17494 * 359.72500 * 25 23 22 27 27 C 1.37888 * 119.82550 * 179.74480 * 26 25 23 28 28 C 1.38408 * 120.17187 * 0.53238 * 27 26 25 29 29 C 1.38402 * 120.34821 * 359.72163 * 28 27 26 30 30 C 1.37890 * 120.17342 * 0.02562 * 29 28 27 31 31 C 1.39030 * 119.94868 * 359.97438 * 13 12 11 32 32 H 0.97000 * 120.00144 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.98643 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.78957 * 179.73264 * 11 10 9 35 35 H 1.08000 * 119.82197 * 180.25079 * 12 11 10 36 36 H 1.09005 * 110.36792 * 274.75299 * 17 16 14 37 37 H 1.09001 * 110.36391 * 37.07326 * 17 16 14 38 38 H 1.09006 * 111.18981 * 279.19655 * 18 17 16 39 39 H 1.08998 * 110.93789 * 155.29394 * 18 17 16 40 40 H 1.08992 * 110.72266 * 205.96925 * 19 18 17 41 41 H 1.09004 * 110.86967 * 82.76798 * 19 18 17 42 42 H 1.08994 * 109.46813 * 31.42854 * 22 20 16 43 43 H 1.09004 * 109.47055 * 151.42406 * 22 20 16 44 44 H 1.08005 * 120.08506 * 359.97438 * 26 25 23 45 45 H 1.08007 * 119.91482 * 180.27329 * 27 26 25 46 46 H 1.07997 * 119.82572 * 179.69863 * 28 27 26 47 47 H 1.07995 * 119.91629 * 180.02562 * 29 28 27 48 48 H 1.07995 * 120.08906 * 179.97438 * 30 29 28 49 49 H 1.08005 * 120.20220 * 179.97438 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5954 1.9854 -1.3947 5 1 1.3908 2.6809 0.5917 6 1 3.4829 1.4731 0.8031 7 6 2.0080 -1.2119 0.0005 8 1 2.9266 -1.3053 -0.5597 9 6 1.5122 -2.3144 0.7348 10 6 0.4313 -2.1460 1.6209 11 6 -0.0457 -3.2204 2.3383 12 6 0.5236 -4.4724 2.1865 13 6 1.5946 -4.6600 1.3066 14 6 2.1979 -6.0012 1.1505 15 8 3.2957 -6.1183 0.6419 16 7 1.5305 -7.0935 1.5720 17 6 0.1770 -7.1011 2.1565 18 6 -0.3596 -8.5319 1.8897 19 6 0.9209 -9.3847 2.0910 20 6 2.0340 -8.4742 1.5312 21 1 2.2611 -8.7556 0.5029 22 6 3.2922 -8.5949 2.3934 23 6 4.5055 -8.2743 1.5590 24 8 4.4001 -8.1530 0.3572 25 6 5.8184 -8.1085 2.2031 26 6 5.9431 -8.2420 3.5895 27 6 7.1776 -8.0904 4.1848 28 6 8.2896 -7.7959 3.4151 29 6 8.1734 -7.6570 2.0430 30 6 6.9468 -7.8107 1.4322 31 6 2.0916 -3.5847 0.5788 32 1 -0.4850 0.8400 0.0004 33 1 -0.0217 -1.1730 1.7410 34 1 -0.8724 -3.0858 3.0202 35 1 0.1392 -5.3091 2.7509 36 1 0.2252 -6.9052 3.2277 37 1 -0.4535 -6.3617 1.6628 38 1 -0.7368 -8.6278 0.8715 39 1 -1.1269 -8.8018 2.6153 40 1 0.8595 -10.3127 1.5226 41 1 1.0873 -9.5919 3.1481 42 1 3.2296 -7.8959 3.2273 43 1 3.3735 -9.6119 2.7771 44 1 5.0754 -8.4669 4.1920 45 1 7.2763 -8.1975 5.2550 46 1 9.2529 -7.6735 3.8877 47 1 9.0457 -7.4276 1.4491 48 1 6.8576 -7.7017 0.3615 49 1 2.9187 -3.7249 -0.1014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085482948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = -8.979510 kcal Electronic energy + Delta-G solvation = -32164.594958 eV Core-core repulsion = 28021.692773 eV Total energy + Delta-G solvation = -4142.902184 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.42346 -39.42068 -37.98618 -37.31911 -36.58767 -33.90154 -32.38322 -31.56703 -31.04132 -30.83761 -29.89060 -29.27517 -26.88107 -25.29556 -24.20128 -23.27421 -22.42289 -21.70828 -20.99904 -20.32146 -19.70179 -18.82408 -17.62077 -17.18055 -16.51532 -15.88857 -15.62844 -15.46211 -15.34045 -14.86816 -14.66128 -14.50795 -14.29831 -13.92126 -13.86805 -13.57642 -13.37934 -13.10511 -13.03747 -12.76106 -12.75263 -12.51181 -12.18535 -12.12363 -11.78862 -11.75289 -11.49528 -11.23871 -11.17562 -11.14901 -11.09727 -11.04348 -10.73685 -10.63370 -10.46014 -9.99239 -9.49157 -9.41142 -9.08388 -9.04833 -8.96569 -8.84727 -8.25033 -7.68281 -7.51906 -7.03335 -4.35436 0.75127 1.29346 2.30225 2.66486 2.76470 3.02084 3.03439 3.21511 3.41615 3.79275 3.85053 3.86493 4.09572 4.44661 4.53117 4.64274 4.72420 4.82311 4.83058 4.94113 5.10945 5.24748 5.28417 5.34421 5.39149 5.42741 5.53625 5.55701 5.63483 5.68064 5.73209 5.82954 5.85715 5.90260 5.96362 6.11166 6.20262 6.23743 6.28208 6.33126 6.37644 6.42386 6.73240 6.81059 6.90477 6.95933 7.10198 7.17411 7.39979 7.73900 7.88540 7.92926 7.95109 7.99747 8.21339 8.51761 8.78183 8.87279 8.96154 9.91573 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.003012 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.648012 B = 9294.301679 C =11644.256355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.090 3.910 3 Si 0.897 3.103 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.175 4.175 11 C -0.103 4.103 12 C -0.250 4.250 13 C -0.103 4.103 14 C 0.572 3.428 15 O -0.529 6.529 16 N -0.617 5.617 17 C 0.097 3.903 18 C -0.138 4.138 19 C -0.127 4.127 20 C 0.139 3.861 21 H 0.088 0.912 22 C -0.172 4.172 23 C 0.391 3.609 24 O -0.411 6.411 25 C -0.152 4.152 26 C -0.081 4.081 27 C -0.135 4.135 28 C -0.099 4.099 29 C -0.133 4.133 30 C -0.062 4.062 31 C -0.169 4.169 32 H 0.285 0.715 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -16.691 9.420 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.102 0.898 9 C 0.098 3.902 10 C -0.195 4.195 11 C -0.121 4.121 12 C -0.269 4.269 13 C -0.106 4.106 14 C 0.364 3.636 15 O -0.406 6.406 16 N -0.353 5.353 17 C -0.025 4.025 18 C -0.176 4.176 19 C -0.165 4.165 20 C 0.035 3.965 21 H 0.106 0.894 22 C -0.210 4.210 23 C 0.265 3.735 24 O -0.282 6.282 25 C -0.153 4.153 26 C -0.099 4.099 27 C -0.153 4.153 28 C -0.117 4.117 29 C -0.151 4.151 30 C -0.080 4.080 31 C -0.190 4.190 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.151 0.849 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.063 -16.465 8.412 19.170 hybrid contribution 0.269 0.975 0.247 1.041 sum 5.331 -15.490 8.659 18.529 Atomic orbital electron populations 1.69958 1.08304 1.30134 1.29826 1.25995 0.94263 1.01850 0.91202 0.86503 0.81374 0.80280 0.79815 1.19098 1.19927 1.18044 1.19572 1.08013 0.94648 1.26715 0.89842 1.17483 0.90727 0.91059 0.90976 1.21426 1.00486 0.98237 0.99331 1.20572 0.98884 0.93466 0.99199 1.21111 1.01567 0.97754 1.06466 1.19247 0.98704 0.91156 1.01451 1.18722 0.84622 0.83755 0.76452 1.90786 1.20319 1.86290 1.43223 1.48464 1.17276 1.05699 1.63819 1.22783 0.84261 0.97259 0.98228 1.22912 0.97034 0.94921 1.02689 1.22701 0.94276 0.97947 1.01537 1.21421 0.92078 0.82752 1.00202 0.89423 1.22417 0.94749 1.03541 1.00329 1.22059 0.88365 0.73718 0.89348 1.90529 1.86475 1.34534 1.16680 1.20665 0.95678 1.04478 0.94449 1.21434 0.97837 0.97003 0.93603 1.21102 0.92724 1.01437 1.00013 1.21359 0.98735 0.97534 0.94047 1.21157 0.97640 1.01295 0.94997 1.21467 0.91576 0.94158 1.00771 1.20994 1.03106 0.91610 1.03250 0.90423 0.86501 0.89171 0.87028 0.91389 0.88640 0.90573 0.90041 0.90237 0.90554 0.88562 0.88073 0.85405 0.85664 0.85862 0.85607 0.84949 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.01 11.29 55.55 0.63 -18.38 16 2 C 0.09 2.22 4.84 -17.34 -0.08 2.14 16 3 Si 0.90 18.29 29.68 -169.99 -5.05 13.24 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.43 8.96 -37.73 -0.34 -12.77 16 8 H 0.08 2.21 8.05 -52.49 -0.42 1.78 16 9 C 0.10 2.71 5.68 -106.87 -0.61 2.10 16 10 C -0.18 -4.49 8.90 -38.81 -0.35 -4.83 16 11 C -0.10 -2.32 10.01 -39.73 -0.40 -2.72 16 12 C -0.25 -5.34 8.12 -38.92 -0.32 -5.66 16 13 C -0.10 -2.43 5.80 -105.04 -0.61 -3.04 16 14 C 0.57 12.51 7.51 -12.31 -0.09 12.41 16 15 O -0.53 -12.96 12.60 -18.50 -0.23 -13.19 16 16 N -0.62 -10.42 3.02 -163.96 -0.49 -10.91 16 17 C 0.10 1.31 4.94 -2.41 -0.01 1.30 16 18 C -0.14 -1.36 7.10 -24.46 -0.17 -1.53 16 19 C -0.13 -1.19 6.35 -24.90 -0.16 -1.35 16 20 C 0.14 1.92 2.89 -66.95 -0.19 1.73 16 21 H 0.09 1.42 6.92 -51.93 -0.36 1.06 16 22 C -0.17 -2.15 4.00 -27.89 -0.11 -2.26 16 23 C 0.39 6.23 5.67 -30.69 -0.17 6.05 16 24 O -0.41 -8.09 13.01 -18.24 -0.24 -8.33 16 25 C -0.15 -2.17 5.87 -105.06 -0.62 -2.79 16 26 C -0.08 -0.92 9.43 -39.11 -0.37 -1.29 16 27 C -0.13 -1.35 10.03 -39.65 -0.40 -1.74 16 28 C -0.10 -0.99 10.04 -39.46 -0.40 -1.38 16 29 C -0.13 -1.51 10.03 -39.65 -0.40 -1.91 16 30 C -0.06 -0.87 9.60 -39.10 -0.38 -1.24 16 31 C -0.17 -4.47 9.33 -38.44 -0.36 -4.83 16 32 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 33 H 0.12 3.04 5.86 -52.49 -0.31 2.73 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.11 1.98 3.77 -52.49 -0.20 1.78 16 36 H 0.07 0.84 7.22 -51.93 -0.37 0.46 16 37 H 0.10 1.44 6.11 -51.93 -0.32 1.13 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.58 7.83 -51.93 -0.41 0.17 16 42 H 0.10 1.22 7.54 -51.93 -0.39 0.82 16 43 H 0.10 0.88 7.89 -51.93 -0.41 0.47 16 44 H 0.13 1.16 6.84 -52.48 -0.36 0.80 16 45 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.13 1.96 7.65 -52.49 -0.40 1.56 16 49 H 0.10 2.78 7.74 -52.48 -0.41 2.38 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -32.66 394.36 -12.41 -45.07 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.45 Total: 10.16 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -6.52 Total: -23.61 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.13 Total: -29.29 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.47 Total: -21.52 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.05 Total: 13.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.66 -12.41 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085482948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.095 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds