Wall clock time and date at job start Tue Mar 31 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48497 * 109.47174 * 264.99869 * 3 2 1 5 5 H 1.48502 * 109.47082 * 24.99797 * 3 2 1 6 6 H 1.48497 * 109.47275 * 144.99640 * 3 2 1 7 7 C 1.39938 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99773 * 143.19860 * 7 2 1 9 9 C 1.41439 * 120.00002 * 323.19808 * 7 2 1 10 10 C 1.40781 * 120.17570 * 350.58281 * 9 7 2 11 11 C 1.37716 * 120.03520 * 180.25118 * 10 9 7 12 12 C 1.38365 * 120.41330 * 359.45128 * 11 10 9 13 13 C 1.39880 * 120.35901 * 0.28042 * 12 11 10 14 14 C 1.47887 * 120.02699 * 179.97438 * 13 12 11 15 15 O 1.21553 * 119.99992 * 196.88992 * 14 13 12 16 16 N 1.34772 * 120.00045 * 16.89924 * 14 13 12 17 17 C 1.47433 * 125.64842 * 2.45629 * 16 14 13 18 18 C 1.55127 * 104.72276 * 155.82297 * 17 16 14 19 19 C 1.55160 * 101.48667 * 37.29419 * 18 17 16 20 20 C 1.47020 * 125.65129 * 182.77448 * 16 14 13 21 21 H 1.09004 * 109.87687 * 300.43471 * 20 16 14 22 22 C 1.52999 * 109.88341 * 61.44119 * 20 16 14 23 23 C 1.50696 * 109.47089 * 271.42398 * 22 20 16 24 24 O 1.21250 * 120.00279 * 350.20973 * 23 22 20 25 25 C 1.47171 * 119.99590 * 170.21429 * 23 22 20 26 26 C 1.39846 * 120.17494 * 359.72500 * 25 23 22 27 27 C 1.37888 * 119.82550 * 179.74480 * 26 25 23 28 28 C 1.38408 * 120.17187 * 0.53238 * 27 26 25 29 29 C 1.38402 * 120.34821 * 359.72163 * 28 27 26 30 30 C 1.37890 * 120.17342 * 0.02562 * 29 28 27 31 31 C 1.39030 * 119.94868 * 359.97438 * 13 12 11 32 32 H 0.97000 * 120.00144 * 359.97438 * 1 2 3 33 33 H 1.07995 * 119.98643 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.78957 * 179.73264 * 11 10 9 35 35 H 1.08000 * 119.82197 * 180.25079 * 12 11 10 36 36 H 1.09005 * 110.36792 * 274.75299 * 17 16 14 37 37 H 1.09001 * 110.36391 * 37.07326 * 17 16 14 38 38 H 1.09006 * 111.18981 * 279.19655 * 18 17 16 39 39 H 1.08998 * 110.93789 * 155.29394 * 18 17 16 40 40 H 1.08992 * 110.72266 * 205.96925 * 19 18 17 41 41 H 1.09004 * 110.86967 * 82.76798 * 19 18 17 42 42 H 1.08994 * 109.46813 * 31.42854 * 22 20 16 43 43 H 1.09004 * 109.47055 * 151.42406 * 22 20 16 44 44 H 1.08005 * 120.08506 * 359.97438 * 26 25 23 45 45 H 1.08007 * 119.91482 * 180.27329 * 27 26 25 46 46 H 1.07997 * 119.82572 * 179.69863 * 28 27 26 47 47 H 1.07995 * 119.91629 * 180.02562 * 29 28 27 48 48 H 1.07995 * 120.08906 * 179.97438 * 30 29 28 49 49 H 1.08005 * 120.20220 * 179.97438 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5954 1.9854 -1.3947 5 1 1.3908 2.6809 0.5917 6 1 3.4829 1.4731 0.8031 7 6 2.0080 -1.2119 0.0005 8 1 2.9266 -1.3053 -0.5597 9 6 1.5122 -2.3144 0.7348 10 6 0.4313 -2.1460 1.6209 11 6 -0.0457 -3.2204 2.3383 12 6 0.5236 -4.4724 2.1865 13 6 1.5946 -4.6600 1.3066 14 6 2.1979 -6.0012 1.1505 15 8 3.2957 -6.1183 0.6419 16 7 1.5305 -7.0935 1.5720 17 6 0.1770 -7.1011 2.1565 18 6 -0.3596 -8.5319 1.8897 19 6 0.9209 -9.3847 2.0910 20 6 2.0340 -8.4742 1.5312 21 1 2.2611 -8.7556 0.5029 22 6 3.2922 -8.5949 2.3934 23 6 4.5055 -8.2743 1.5590 24 8 4.4001 -8.1530 0.3572 25 6 5.8184 -8.1085 2.2031 26 6 5.9431 -8.2420 3.5895 27 6 7.1776 -8.0904 4.1848 28 6 8.2896 -7.7959 3.4151 29 6 8.1734 -7.6570 2.0430 30 6 6.9468 -7.8107 1.4322 31 6 2.0916 -3.5847 0.5788 32 1 -0.4850 0.8400 0.0004 33 1 -0.0217 -1.1730 1.7410 34 1 -0.8724 -3.0858 3.0202 35 1 0.1392 -5.3091 2.7509 36 1 0.2252 -6.9052 3.2277 37 1 -0.4535 -6.3617 1.6628 38 1 -0.7368 -8.6278 0.8715 39 1 -1.1269 -8.8018 2.6153 40 1 0.8595 -10.3127 1.5226 41 1 1.0873 -9.5919 3.1481 42 1 3.2296 -7.8959 3.2273 43 1 3.3735 -9.6119 2.7771 44 1 5.0754 -8.4669 4.1920 45 1 7.2763 -8.1975 5.2550 46 1 9.2529 -7.6735 3.8877 47 1 9.0457 -7.4276 1.4491 48 1 6.8576 -7.7017 0.3615 49 1 2.9187 -3.7249 -0.1014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085482948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:23 Heat of formation + Delta-G solvation = -25.222157 kcal Electronic energy + Delta-G solvation = -32165.299292 eV Core-core repulsion = 28021.692773 eV Total energy + Delta-G solvation = -4143.606518 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.69356 -40.61798 -39.29725 -38.74672 -38.19858 -35.77485 -33.58751 -32.79532 -31.97279 -31.85510 -31.69085 -30.99924 -28.01514 -27.11178 -25.51342 -24.41822 -23.39250 -22.95500 -22.67947 -21.70783 -20.90647 -20.22965 -19.23820 -18.30919 -17.67272 -17.47335 -17.12084 -16.67972 -16.55181 -16.53133 -16.08393 -15.74433 -15.35132 -15.26810 -15.08993 -14.96046 -14.72944 -14.44213 -14.34097 -14.21002 -13.85783 -13.72285 -13.56397 -13.47428 -13.20525 -12.98847 -12.89783 -12.64416 -12.59798 -12.54261 -12.34268 -12.13124 -12.02511 -12.01332 -11.75499 -11.55289 -11.21345 -10.88782 -10.63418 -10.55257 -9.96889 -9.90981 -9.68971 -9.61531 -9.37262 -8.91134 -6.37192 -0.22463 0.40265 0.43803 0.93096 1.31838 1.40284 1.52881 1.61433 2.03965 2.10876 2.16958 2.59532 2.85086 3.08006 3.54738 3.65245 3.68006 3.84611 3.91750 4.01115 4.04359 4.16197 4.21592 4.29616 4.33976 4.41542 4.46990 4.48833 4.55004 4.65879 4.67769 4.74400 4.87776 4.93976 4.95448 5.00553 5.01907 5.04430 5.11347 5.15401 5.18972 5.25041 5.36782 5.40605 5.45203 5.46767 5.49692 5.57823 5.85869 5.94106 5.95955 6.01238 6.21179 6.52605 6.59406 6.76163 6.80440 6.91081 7.32864 8.07870 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.003012 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.648012 B = 9294.301679 C =11644.256355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.057 3.943 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.252 1.252 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.076 3.924 10 C -0.195 4.195 11 C -0.100 4.100 12 C -0.227 4.227 13 C -0.109 4.109 14 C 0.561 3.439 15 O -0.569 6.569 16 N -0.610 5.610 17 C 0.081 3.919 18 C -0.126 4.126 19 C -0.111 4.111 20 C 0.129 3.871 21 H 0.053 0.947 22 C -0.165 4.165 23 C 0.381 3.619 24 O -0.470 6.470 25 C -0.186 4.186 26 C -0.078 4.078 27 C -0.132 4.132 28 C -0.093 4.093 29 C -0.141 4.141 30 C -0.095 4.095 31 C -0.212 4.212 32 H 0.298 0.702 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.149 0.851 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.158 0.842 47 H 0.142 0.858 48 H 0.102 0.898 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -18.429 14.142 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.175 1.175 6 H -0.189 1.189 7 C -0.537 4.537 8 H 0.083 0.917 9 C 0.074 3.926 10 C -0.214 4.214 11 C -0.118 4.118 12 C -0.246 4.246 13 C -0.112 4.112 14 C 0.353 3.647 15 O -0.449 6.449 16 N -0.343 5.343 17 C -0.040 4.040 18 C -0.164 4.164 19 C -0.149 4.149 20 C 0.026 3.974 21 H 0.071 0.929 22 C -0.202 4.202 23 C 0.260 3.740 24 O -0.345 6.345 25 C -0.187 4.187 26 C -0.096 4.096 27 C -0.149 4.149 28 C -0.110 4.110 29 C -0.159 4.159 30 C -0.113 4.113 31 C -0.232 4.232 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.167 0.833 44 H 0.174 0.826 45 H 0.181 0.819 46 H 0.176 0.824 47 H 0.160 0.840 48 H 0.121 0.879 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.589 -18.252 13.169 22.791 hybrid contribution 0.700 1.364 -1.187 1.939 sum 4.289 -16.887 11.982 21.146 Atomic orbital electron populations 1.69922 1.09408 1.31884 1.29451 1.26763 0.95043 1.04497 0.90177 0.85391 0.79623 0.75813 0.80023 1.18334 1.17526 1.18873 1.19725 1.08419 0.96773 1.28811 0.91687 1.17768 0.91704 0.91259 0.91882 1.21495 1.00556 0.99193 1.00171 1.21021 0.99345 0.92768 0.98656 1.21651 0.99432 0.98849 1.04679 1.19597 0.99003 0.91651 1.00941 1.18535 0.84526 0.84587 0.77089 1.90785 1.22127 1.86909 1.45075 1.48469 1.18327 1.05703 1.61850 1.23086 0.82011 0.99755 0.99125 1.22902 0.98001 0.92009 1.03464 1.22746 0.91391 0.97160 1.03582 1.21721 0.94691 0.81675 0.99353 0.92910 1.22474 0.92181 1.06277 0.99315 1.22858 0.90305 0.71830 0.89046 1.90507 1.87428 1.37493 1.19091 1.20808 0.94974 1.06739 0.96166 1.21769 0.99737 0.95967 0.92149 1.21603 0.91837 0.99617 1.01868 1.21823 1.00544 0.95535 0.93145 1.21405 0.96968 1.01100 0.96389 1.21489 0.93492 0.96528 0.99833 1.20898 1.03951 0.93161 1.05220 0.89024 0.87155 0.85107 0.82358 0.88678 0.90466 0.91492 0.86133 0.88288 0.87102 0.87918 0.83321 0.82608 0.81887 0.82389 0.84022 0.87941 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.14 11.29 21.83 0.25 -39.90 16 2 C 0.06 2.90 4.84 85.25 0.41 3.31 16 3 Si 0.97 38.55 29.68 68.60 2.04 40.59 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.51 -29.61 8.96 23.47 0.21 -29.40 16 8 H 0.06 3.83 8.05 -2.91 -0.02 3.81 16 9 C 0.08 4.42 5.68 -21.32 -0.12 4.30 16 10 C -0.19 -10.24 8.90 22.77 0.20 -10.04 16 11 C -0.10 -4.39 10.01 22.18 0.22 -4.17 16 12 C -0.23 -9.47 8.12 22.70 0.18 -9.29 16 13 C -0.11 -5.38 5.80 -20.13 -0.12 -5.50 16 14 C 0.56 25.76 7.51 86.80 0.65 26.41 16 15 O -0.57 -30.39 12.60 18.89 0.24 -30.15 16 16 N -0.61 -20.25 3.02 -790.92 -2.39 -22.64 16 17 C 0.08 1.92 4.94 86.93 0.43 2.35 16 18 C -0.13 -1.92 7.10 32.06 0.23 -1.70 16 19 C -0.11 -1.57 6.35 31.78 0.20 -1.37 16 20 C 0.13 3.40 2.89 45.34 0.13 3.53 16 21 H 0.05 1.79 6.92 -2.39 -0.02 1.77 16 22 C -0.16 -3.86 4.00 29.85 0.12 -3.74 16 23 C 0.38 12.83 5.67 28.03 0.16 12.99 16 24 O -0.47 -20.56 13.01 19.84 0.26 -20.30 16 25 C -0.19 -5.55 5.87 -20.15 -0.12 -5.67 16 26 C -0.08 -1.64 9.43 22.58 0.21 -1.42 16 27 C -0.13 -2.21 10.03 22.23 0.22 -1.98 16 28 C -0.09 -1.64 10.04 22.35 0.22 -1.42 16 29 C -0.14 -3.27 10.03 22.23 0.22 -3.05 16 30 C -0.09 -2.95 9.60 22.58 0.22 -2.73 16 31 C -0.21 -12.21 9.33 23.01 0.21 -12.00 16 32 H 0.30 13.36 8.30 -92.71 -0.77 12.59 16 33 H 0.11 5.87 5.86 -2.91 -0.02 5.85 16 34 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.16 5.04 3.77 -2.91 -0.01 5.03 16 36 H 0.10 1.81 7.22 -2.38 -0.02 1.79 16 37 H 0.08 2.13 6.11 -2.39 -0.01 2.12 16 38 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.11 0.90 7.83 -2.38 -0.02 0.88 16 42 H 0.10 2.31 7.54 -2.39 -0.02 2.30 16 43 H 0.15 1.99 7.89 -2.38 -0.02 1.98 16 44 H 0.16 2.24 6.84 -2.91 -0.02 2.22 16 45 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 46 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 47 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 48 H 0.10 3.62 7.65 -2.91 -0.02 3.60 16 49 H 0.07 4.29 7.74 -2.91 -0.02 4.27 16 Total: -1.00 -84.09 394.36 5.48 -78.60 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.98 Total: 34.36 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 4.11 Total: -40.57 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -2.14 Total: -62.53 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: 0.50 Total: -50.45 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.04 Total: 40.59 kcal Total: -84.09 5.48 -78.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085482948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.382 kcal (2) G-P(sol) polarization free energy of solvation -84.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds