Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48504 * 109.47031 * 275.25799 * 3 2 1 5 5 H 1.48501 * 109.47466 * 35.25914 * 3 2 1 6 6 H 1.48506 * 109.47235 * 155.26147 * 3 2 1 7 7 C 1.39038 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99671 * 342.30694 * 7 2 1 9 9 N 1.36868 * 120.00076 * 162.30852 * 7 2 1 10 10 C 1.46490 * 119.99954 * 318.52528 * 9 7 2 11 11 C 1.50702 * 109.47219 * 270.00135 * 10 9 7 12 12 C 1.38240 * 119.99572 * 269.72954 * 11 10 9 13 13 C 1.38242 * 119.99507 * 179.76475 * 12 11 10 14 14 C 1.38232 * 120.00030 * 0.50549 * 13 12 11 15 15 C 1.38237 * 119.99974 * 359.74724 * 14 13 12 16 16 C 1.38232 * 120.00104 * 89.99979 * 11 10 9 17 17 C 1.34778 * 119.99585 * 138.52669 * 9 7 2 18 18 O 1.21632 * 119.99469 * 183.29714 * 17 9 7 19 19 C 1.47472 * 120.00320 * 3.29830 * 17 9 7 20 20 C 1.39855 * 120.02843 * 147.62030 * 19 17 9 21 21 C 1.36601 * 119.97376 * 179.97438 * 20 19 17 22 22 C 1.39630 * 120.02617 * 359.97438 * 21 20 19 23 23 C 1.48103 * 119.97003 * 180.02562 * 22 21 20 24 24 C 1.35029 * 122.99151 * 179.97438 * 23 22 21 25 25 S 1.76181 * 107.85846 * 179.97438 * 24 23 22 26 26 C 1.70913 * 90.45079 * 0.02562 * 25 24 23 27 27 N 1.28733 * 110.53874 * 359.97438 * 26 25 24 28 28 C 1.39625 * 120.05696 * 0.27320 * 22 21 20 29 29 C 1.36614 * 120.02394 * 359.44405 * 28 22 21 30 30 H 0.97005 * 120.00013 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47340 * 30.00169 * 10 9 7 32 32 H 1.08997 * 109.47044 * 150.00449 * 10 9 7 33 33 H 1.07998 * 120.00413 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.00044 * 180.22745 * 13 12 11 35 35 H 1.08002 * 120.00393 * 179.72356 * 14 13 12 36 36 H 1.08006 * 120.00019 * 179.97438 * 15 14 13 37 37 H 1.08003 * 120.00106 * 0.02562 * 16 11 10 38 38 H 1.08005 * 120.01341 * 359.95141 * 20 19 17 39 39 H 1.08001 * 119.98647 * 180.02562 * 21 20 19 40 40 H 1.07999 * 126.07326 * 0.02562 * 24 23 22 41 41 H 1.08001 * 124.73065 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.99002 * 179.73288 * 28 22 21 43 43 H 1.08000 * 120.01268 * 180.27521 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3840 2.1106 -1.3942 5 1 1.5051 2.6181 0.8082 6 1 3.5964 1.4107 0.5859 7 6 2.0089 -1.2041 0.0005 8 1 1.5072 -2.1171 0.2852 9 7 3.3290 -1.2322 -0.3597 10 6 3.7949 -0.4361 -1.4977 11 6 3.6937 -1.2551 -2.7587 12 6 4.7630 -2.0304 -3.1668 13 6 4.6684 -2.7855 -4.3209 14 6 3.5086 -2.7571 -5.0724 15 6 2.4413 -1.9776 -4.6670 16 6 2.5339 -1.2267 -3.5102 17 6 4.2003 -1.9925 0.3327 18 8 5.3833 -1.9714 0.0508 19 6 3.7194 -2.8498 1.4321 20 6 4.3558 -4.0657 1.7011 21 6 3.9097 -4.8587 2.7200 22 6 2.8191 -4.4555 3.4931 23 6 2.3368 -5.3160 4.5978 24 6 1.2893 -4.9859 5.3833 25 16 1.0632 -6.2819 6.5552 26 6 2.3844 -7.1354 5.8864 27 7 2.8952 -6.4791 4.9037 28 6 2.1796 -3.2442 3.2222 29 6 2.6275 -2.4467 2.2075 30 1 -0.4850 0.8401 0.0004 31 1 3.1770 0.4567 -1.5938 32 1 4.8325 -0.1442 -1.3364 33 1 5.6709 -2.0490 -2.5823 34 1 5.5024 -3.3941 -4.6379 35 1 3.4363 -3.3435 -5.9765 36 1 1.5352 -1.9551 -5.2544 37 1 1.7002 -0.6172 -3.1938 38 1 5.1994 -4.3778 1.1033 39 1 4.4013 -5.7976 2.9282 40 1 0.6949 -4.0875 5.3063 41 1 2.7409 -8.0919 6.2390 42 1 1.3335 -2.9354 3.8181 43 1 2.1355 -1.5077 2.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087159155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = 85.291652 kcal Electronic energy + Delta-G solvation = -29033.622408 eV Core-core repulsion = 25136.301994 eV Total energy + Delta-G solvation = -3897.320414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.15181 -39.53220 -38.53111 -37.34254 -35.16076 -32.45069 -32.05313 -31.20462 -30.40190 -30.38177 -28.94484 -26.28544 -25.50046 -24.99525 -22.89743 -22.03788 -21.84153 -20.99263 -19.81765 -19.20616 -18.35915 -17.74959 -16.70540 -16.07389 -15.94519 -15.49509 -14.95009 -14.84662 -14.61231 -14.60066 -14.41287 -14.19041 -13.66674 -13.62209 -13.17217 -12.98046 -12.92424 -12.78326 -12.67360 -12.51148 -12.11473 -11.98323 -11.93856 -11.62721 -11.21154 -11.11016 -10.84235 -10.60506 -10.48654 -10.20525 -10.06274 -9.76134 -9.61743 -9.46528 -9.36314 -8.83859 -8.48881 -8.42479 -8.24090 -7.89728 -7.81400 -6.61738 -4.23752 0.47375 1.28453 1.39294 1.61490 1.79503 1.90221 2.01807 2.87018 2.96259 3.12586 3.19307 3.72176 3.97808 4.06899 4.08051 4.45806 4.55902 4.82645 4.95929 5.09734 5.25169 5.32983 5.33341 5.44753 5.46529 5.55378 5.65731 5.71800 5.82453 5.84719 6.00398 6.02208 6.12147 6.20281 6.24879 6.36370 6.47839 6.56461 6.64218 6.85266 6.92957 6.95385 6.99262 7.13641 7.17242 7.22633 7.45450 7.49590 7.64697 7.91629 8.11495 8.77140 9.16254 9.50815 10.45869 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.002809 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.369371 B = 9966.223561 C =11149.604456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.069 3.931 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.344 4.344 8 H 0.112 0.888 9 N -0.450 5.450 10 C 0.135 3.865 11 C -0.085 4.085 12 C -0.101 4.101 13 C -0.132 4.132 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.090 4.090 17 C 0.523 3.477 18 O -0.589 6.589 19 C -0.088 4.088 20 C -0.082 4.082 21 C -0.103 4.103 22 C -0.027 4.027 23 C 0.115 3.885 24 C -0.247 4.247 25 S 0.109 5.891 26 C 0.022 3.978 27 N -0.460 5.460 28 C -0.117 4.117 29 C -0.067 4.067 30 H 0.277 0.723 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.182 0.818 41 H 0.199 0.801 42 H 0.122 0.878 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 -7.787 5.512 9.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.140 4.140 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.129 0.871 9 N -0.169 5.169 10 C 0.013 3.987 11 C -0.086 4.086 12 C -0.120 4.120 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.109 4.109 17 C 0.313 3.687 18 O -0.474 6.474 19 C -0.091 4.091 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.031 4.031 23 C -0.014 4.014 24 C -0.386 4.386 25 S 0.361 5.639 26 C -0.277 4.277 27 N -0.173 5.173 28 C -0.136 4.136 29 C -0.085 4.085 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.199 0.801 41 H 0.216 0.784 42 H 0.139 0.861 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.005 -8.096 5.937 10.090 hybrid contribution 0.293 1.214 -0.700 1.431 sum 1.298 -6.883 5.237 8.746 Atomic orbital electron populations 1.69707 1.06093 1.28395 1.44377 1.25336 0.95103 0.98283 0.95230 0.87046 0.81420 0.83567 0.78575 1.19746 1.21097 1.18132 1.19199 0.83831 0.96341 1.47693 0.87104 1.43557 1.08576 1.41090 1.23662 1.20649 1.00610 0.93253 0.84189 1.20246 0.93955 0.98544 0.95847 1.21203 0.98945 0.95881 0.95964 1.21043 0.97899 1.00106 0.95928 1.21030 0.94014 0.99807 0.99816 1.21072 0.98425 0.97916 0.97283 1.21152 0.97190 0.98678 0.93881 1.18227 0.85127 0.82871 0.82427 1.90634 1.16426 1.69857 1.70495 1.20050 0.96704 0.95296 0.97082 1.20878 0.99048 0.93223 0.96970 1.20741 0.96320 0.99924 0.95257 1.18145 0.97019 0.93777 0.94113 1.19026 0.93516 0.91528 0.97349 1.27141 1.04894 1.05251 1.01272 1.83929 1.32626 1.13298 1.34045 1.28282 0.97939 1.04684 0.96813 1.66174 1.29680 1.06559 1.14910 1.20870 1.00222 0.93809 0.98723 1.22076 0.93424 1.01581 0.91451 0.91202 0.90821 0.90074 0.85685 0.86733 0.86873 0.86593 0.85745 0.85606 0.85486 0.80064 0.78428 0.86055 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.39 13.95 55.50 0.77 -20.62 16 2 C 0.07 1.65 5.30 -17.46 -0.09 1.56 16 3 Si 0.87 18.94 24.91 -169.99 -4.23 14.71 16 4 H -0.27 -5.74 6.74 56.52 0.38 -5.35 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.34 -8.21 6.53 -15.01 -0.10 -8.31 16 8 H 0.11 2.84 6.48 -52.49 -0.34 2.50 16 9 N -0.45 -10.36 2.10 -117.31 -0.25 -10.61 16 10 C 0.14 2.91 4.32 -5.20 -0.02 2.89 16 11 C -0.08 -1.70 5.46 -104.62 -0.57 -2.27 16 12 C -0.10 -1.89 9.70 -39.58 -0.38 -2.27 16 13 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 14 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 15 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 16 C -0.09 -1.73 9.70 -39.58 -0.38 -2.11 16 17 C 0.52 12.09 7.39 -12.50 -0.09 12.00 16 18 O -0.59 -14.35 16.02 5.25 0.08 -14.27 16 19 C -0.09 -1.84 5.52 -104.93 -0.58 -2.42 16 20 C -0.08 -1.54 9.54 -39.57 -0.38 -1.92 16 21 C -0.10 -1.77 9.58 -39.65 -0.38 -2.15 16 22 C -0.03 -0.46 5.88 -104.81 -0.62 -1.07 16 23 C 0.12 1.70 6.64 -84.63 -0.56 1.14 16 24 C -0.25 -3.01 10.63 29.59 0.31 -2.69 16 25 S 0.11 1.01 23.21 -107.50 -2.49 -1.48 16 26 C 0.02 0.23 12.19 51.46 0.63 0.86 16 27 N -0.46 -6.44 9.90 -12.30 -0.12 -6.56 16 28 C -0.12 -1.99 9.42 -39.65 -0.37 -2.36 16 29 C -0.07 -1.32 7.70 -39.56 -0.30 -1.63 16 30 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.07 1.59 3.39 -51.93 -0.18 1.41 16 32 H 0.08 1.72 7.32 -51.93 -0.38 1.34 16 33 H 0.13 2.36 7.76 -52.49 -0.41 1.96 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 38 H 0.13 2.28 7.95 -52.48 -0.42 1.87 16 39 H 0.13 2.00 7.69 -52.49 -0.40 1.60 16 40 H 0.18 1.92 6.88 -52.49 -0.36 1.56 16 41 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.75 6.64 -52.49 -0.35 1.40 16 43 H 0.17 3.58 5.40 -52.49 -0.28 3.30 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -28.46 374.82 -10.07 -38.52 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -4.39 Total: 12.81 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -5.09 Total: -18.16 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.41 Total: -37.78 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.23 Total: 14.71 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.46 -10.07 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087159155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.813 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds