Wall clock time and date at job start Tue Mar 31 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86802 * 119.99887 * 2 1 4 4 H 1.48504 * 109.47031 * 275.25799 * 3 2 1 5 5 H 1.48501 * 109.47466 * 35.25914 * 3 2 1 6 6 H 1.48506 * 109.47235 * 155.26147 * 3 2 1 7 7 C 1.39038 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99671 * 342.30694 * 7 2 1 9 9 N 1.36868 * 120.00076 * 162.30852 * 7 2 1 10 10 C 1.46490 * 119.99954 * 318.52528 * 9 7 2 11 11 C 1.50702 * 109.47219 * 270.00135 * 10 9 7 12 12 C 1.38240 * 119.99572 * 269.72954 * 11 10 9 13 13 C 1.38242 * 119.99507 * 179.76475 * 12 11 10 14 14 C 1.38232 * 120.00030 * 0.50549 * 13 12 11 15 15 C 1.38237 * 119.99974 * 359.74724 * 14 13 12 16 16 C 1.38232 * 120.00104 * 89.99979 * 11 10 9 17 17 C 1.34778 * 119.99585 * 138.52669 * 9 7 2 18 18 O 1.21632 * 119.99469 * 183.29714 * 17 9 7 19 19 C 1.47472 * 120.00320 * 3.29830 * 17 9 7 20 20 C 1.39855 * 120.02843 * 147.62030 * 19 17 9 21 21 C 1.36601 * 119.97376 * 179.97438 * 20 19 17 22 22 C 1.39630 * 120.02617 * 359.97438 * 21 20 19 23 23 C 1.48103 * 119.97003 * 180.02562 * 22 21 20 24 24 C 1.35029 * 122.99151 * 179.97438 * 23 22 21 25 25 S 1.76181 * 107.85846 * 179.97438 * 24 23 22 26 26 C 1.70913 * 90.45079 * 0.02562 * 25 24 23 27 27 N 1.28733 * 110.53874 * 359.97438 * 26 25 24 28 28 C 1.39625 * 120.05696 * 0.27320 * 22 21 20 29 29 C 1.36614 * 120.02394 * 359.44405 * 28 22 21 30 30 H 0.97005 * 120.00013 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47340 * 30.00169 * 10 9 7 32 32 H 1.08997 * 109.47044 * 150.00449 * 10 9 7 33 33 H 1.07998 * 120.00413 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.00044 * 180.22745 * 13 12 11 35 35 H 1.08002 * 120.00393 * 179.72356 * 14 13 12 36 36 H 1.08006 * 120.00019 * 179.97438 * 15 14 13 37 37 H 1.08003 * 120.00106 * 0.02562 * 16 11 10 38 38 H 1.08005 * 120.01341 * 359.95141 * 20 19 17 39 39 H 1.08001 * 119.98647 * 180.02562 * 21 20 19 40 40 H 1.07999 * 126.07326 * 0.02562 * 24 23 22 41 41 H 1.08001 * 124.73065 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.99002 * 179.73288 * 28 22 21 43 43 H 1.08000 * 120.01268 * 180.27521 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3840 2.1106 -1.3942 5 1 1.5051 2.6181 0.8082 6 1 3.5964 1.4107 0.5859 7 6 2.0089 -1.2041 0.0005 8 1 1.5072 -2.1171 0.2852 9 7 3.3290 -1.2322 -0.3597 10 6 3.7949 -0.4361 -1.4977 11 6 3.6937 -1.2551 -2.7587 12 6 4.7630 -2.0304 -3.1668 13 6 4.6684 -2.7855 -4.3209 14 6 3.5086 -2.7571 -5.0724 15 6 2.4413 -1.9776 -4.6670 16 6 2.5339 -1.2267 -3.5102 17 6 4.2003 -1.9925 0.3327 18 8 5.3833 -1.9714 0.0508 19 6 3.7194 -2.8498 1.4321 20 6 4.3558 -4.0657 1.7011 21 6 3.9097 -4.8587 2.7200 22 6 2.8191 -4.4555 3.4931 23 6 2.3368 -5.3160 4.5978 24 6 1.2893 -4.9859 5.3833 25 16 1.0632 -6.2819 6.5552 26 6 2.3844 -7.1354 5.8864 27 7 2.8952 -6.4791 4.9037 28 6 2.1796 -3.2442 3.2222 29 6 2.6275 -2.4467 2.2075 30 1 -0.4850 0.8401 0.0004 31 1 3.1770 0.4567 -1.5938 32 1 4.8325 -0.1442 -1.3364 33 1 5.6709 -2.0490 -2.5823 34 1 5.5024 -3.3941 -4.6379 35 1 3.4363 -3.3435 -5.9765 36 1 1.5352 -1.9551 -5.2544 37 1 1.7002 -0.6172 -3.1938 38 1 5.1994 -4.3778 1.1033 39 1 4.4013 -5.7976 2.9282 40 1 0.6949 -4.0875 5.3063 41 1 2.7409 -8.0919 6.2390 42 1 1.3335 -2.9354 3.8181 43 1 2.1355 -1.5077 2.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087159155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:07 Heat of formation + Delta-G solvation = 71.623616 kcal Electronic energy + Delta-G solvation = -29034.215099 eV Core-core repulsion = 25136.301994 eV Total energy + Delta-G solvation = -3897.913105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52562 -40.86007 -39.89741 -38.80891 -36.96812 -34.18537 -33.45785 -32.63093 -31.83612 -31.75116 -30.13884 -27.75828 -27.11501 -26.27727 -24.26977 -23.41444 -23.23766 -22.40134 -21.24553 -20.58977 -19.65049 -19.12577 -18.30607 -17.46481 -17.37224 -16.99835 -16.44284 -16.19696 -16.01666 -15.88635 -15.76985 -15.55410 -15.21575 -14.94011 -14.59333 -14.42535 -14.38608 -14.21413 -14.09137 -13.95047 -13.57276 -13.43781 -13.29894 -13.19983 -12.89308 -12.45458 -12.33098 -12.06588 -11.99097 -11.86454 -11.70105 -11.17402 -10.73082 -10.63812 -10.60453 -10.36997 -9.96667 -9.79469 -9.70549 -9.66207 -9.05556 -8.50893 -6.14046 -0.57131 0.16958 0.41142 0.46517 0.52833 0.57305 0.75764 1.16159 1.29588 1.39073 1.67147 2.12951 2.17396 2.49223 2.84932 3.03699 3.12623 3.17350 3.83050 3.85894 3.94058 4.02426 4.11171 4.13123 4.18623 4.26613 4.31687 4.33343 4.40279 4.48494 4.51614 4.70563 4.72365 4.76759 4.88674 5.03534 5.10520 5.18301 5.19924 5.36710 5.44384 5.56243 5.58974 5.60975 5.64300 5.77921 5.97694 6.05538 6.14774 6.20987 6.74117 6.89900 7.31478 7.68276 8.60098 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.002809 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.369371 B = 9966.223561 C =11149.604456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.046 3.954 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.089 0.911 9 N -0.456 5.456 10 C 0.134 3.866 11 C -0.108 4.108 12 C -0.117 4.117 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.127 4.127 16 C -0.111 4.111 17 C 0.516 3.484 18 O -0.610 6.610 19 C -0.123 4.123 20 C -0.082 4.082 21 C -0.105 4.105 22 C -0.014 4.014 23 C 0.082 3.918 24 C -0.254 4.254 25 S 0.185 5.815 26 C 0.021 3.979 27 N -0.496 5.496 28 C -0.117 4.117 29 C -0.073 4.073 30 H 0.282 0.718 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.193 0.807 41 H 0.235 0.765 42 H 0.147 0.853 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -10.013 6.117 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.106 0.894 9 N -0.175 5.175 10 C 0.012 3.988 11 C -0.109 4.109 12 C -0.136 4.136 13 C -0.145 4.145 14 C -0.135 4.135 15 C -0.145 4.145 16 C -0.130 4.130 17 C 0.308 3.692 18 O -0.497 6.497 19 C -0.127 4.127 20 C -0.101 4.101 21 C -0.123 4.123 22 C -0.017 4.017 23 C -0.048 4.048 24 C -0.393 4.393 25 S 0.438 5.562 26 C -0.278 4.278 27 N -0.210 5.210 28 C -0.136 4.136 29 C -0.091 4.091 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.210 0.790 41 H 0.251 0.749 42 H 0.164 0.836 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.312 -10.323 6.547 12.228 hybrid contribution 0.455 1.694 -0.729 1.899 sum 0.767 -8.629 5.818 10.435 Atomic orbital electron populations 1.69742 1.06904 1.29133 1.46026 1.25621 0.95385 0.99886 0.95067 0.86413 0.79811 0.81458 0.78976 1.18678 1.20428 1.19568 1.18915 0.83969 0.95630 1.47448 0.89380 1.43634 1.08214 1.41375 1.24280 1.20643 0.99855 0.93408 0.84870 1.20167 0.95256 0.99765 0.95713 1.21211 0.98182 0.96878 0.97313 1.21413 0.99339 0.99149 0.94586 1.21488 0.92706 0.98783 1.00569 1.21409 0.99991 0.96869 0.96220 1.21142 0.96441 0.99962 0.95426 1.18672 0.84928 0.82851 0.82744 1.90589 1.17156 1.70604 1.71359 1.20015 0.98520 0.96423 0.97697 1.20915 0.98904 0.92790 0.97512 1.20882 0.96619 1.00120 0.94714 1.18398 0.95844 0.93466 0.93995 1.18848 0.95349 0.92520 0.98091 1.27485 1.03795 1.06624 1.01402 1.83736 1.30690 1.10486 1.31263 1.28928 0.97787 1.05509 0.95535 1.66141 1.31151 1.06822 1.16886 1.21040 1.00772 0.93623 0.98152 1.21849 0.93336 1.01381 0.92580 0.90798 0.91295 0.90752 0.86918 0.83645 0.82717 0.83879 0.87408 0.85606 0.84021 0.78962 0.74904 0.83552 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.69 13.95 21.68 0.30 -45.39 16 2 C 0.05 2.31 5.30 84.95 0.45 2.76 16 3 Si 0.91 40.34 24.91 68.60 1.71 42.04 16 4 H -0.26 -11.08 6.74 99.48 0.67 -10.41 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.33 -16.75 6.53 84.10 0.55 -16.20 16 8 H 0.09 4.81 6.48 -2.91 -0.02 4.79 16 9 N -0.46 -22.23 2.10 -643.30 -1.35 -23.58 16 10 C 0.13 6.10 4.32 85.64 0.37 6.47 16 11 C -0.11 -4.49 5.46 -19.86 -0.11 -4.60 16 12 C -0.12 -4.43 9.70 22.27 0.22 -4.22 16 13 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 14 C -0.12 -3.24 10.05 22.27 0.22 -3.01 16 15 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 16 C -0.11 -4.32 9.70 22.27 0.22 -4.10 16 17 C 0.52 25.31 7.39 86.68 0.64 25.96 16 18 O -0.61 -31.42 16.02 -4.13 -0.07 -31.49 16 19 C -0.12 -5.44 5.52 -20.06 -0.11 -5.55 16 20 C -0.08 -3.21 9.54 22.28 0.21 -2.99 16 21 C -0.10 -3.60 9.58 22.22 0.21 -3.39 16 22 C -0.01 -0.46 5.88 -19.99 -0.12 -0.58 16 23 C 0.08 2.29 6.64 40.91 0.27 2.56 16 24 C -0.25 -5.56 10.63 67.08 0.71 -4.85 16 25 S 0.18 2.74 23.21 -56.49 -1.31 1.43 16 26 C 0.02 0.36 12.19 130.70 1.59 1.95 16 27 N -0.50 -12.84 9.90 -192.83 -1.91 -14.75 16 28 C -0.12 -4.02 9.42 22.22 0.21 -3.81 16 29 C -0.07 -3.02 7.70 22.28 0.17 -2.85 16 30 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 31 H 0.07 3.12 3.39 -2.39 -0.01 3.12 16 32 H 0.07 3.38 7.32 -2.39 -0.02 3.36 16 33 H 0.11 4.46 7.76 -2.91 -0.02 4.44 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.13 4.78 7.95 -2.91 -0.02 4.76 16 39 H 0.14 4.41 7.69 -2.91 -0.02 4.39 16 40 H 0.19 3.61 6.88 -2.91 -0.02 3.59 16 41 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.15 4.15 6.64 -2.91 -0.02 4.13 16 43 H 0.15 6.71 5.40 -2.91 -0.02 6.70 16 Total: -1.00 -65.08 374.82 4.57 -60.52 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 1.03 Total: 35.05 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 6.16 Total: -23.83 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.96 Total: -83.73 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.07 Total: -31.49 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.71 Total: 42.04 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.31 Total: 1.43 kcal Total: -65.08 4.57 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087159155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.143 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds