Wall clock time and date at job start Tue Mar 31 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47475 * 240.00284 * 3 2 1 5 5 H 1.48507 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47087 * 119.99878 * 3 2 1 7 7 C 1.38810 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 198.42133 * 7 2 1 9 9 N 1.36938 * 119.99986 * 18.41593 * 7 2 1 10 10 C 1.46924 * 120.63481 * 207.07593 * 9 7 2 11 11 C 1.53190 * 108.77895 * 233.59258 * 10 9 7 12 12 C 1.53040 * 109.31277 * 305.36311 * 11 10 9 13 13 C 1.53000 * 109.46260 * 181.38482 * 12 11 10 14 14 N 1.46505 * 109.46988 * 174.99803 * 13 12 11 15 15 C 1.34773 * 119.99813 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00128 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.46743 * 18.49571 * 17 15 14 19 19 C 1.52999 * 109.47234 * 258.49316 * 17 15 14 20 20 C 1.53003 * 109.46970 * 300.00052 * 19 17 15 21 21 C 1.53001 * 109.47103 * 299.99708 * 20 19 17 22 22 C 1.52999 * 109.46969 * 60.00292 * 21 20 19 23 23 C 1.52996 * 109.47021 * 138.49130 * 17 15 14 24 24 H 1.09003 * 109.47067 * 180.02562 * 23 17 15 25 25 C 1.52999 * 109.47268 * 300.00165 * 23 17 15 26 26 F 1.39901 * 109.47137 * 53.66719 * 25 23 17 27 27 F 1.39905 * 109.47191 * 173.66223 * 25 23 17 28 28 F 1.39893 * 109.47402 * 293.66405 * 25 23 17 29 29 C 1.53043 * 109.53642 * 61.36292 * 12 11 10 30 30 C 1.46932 * 120.62957 * 27.05846 * 9 7 2 31 31 H 0.96997 * 119.99783 * 359.97438 * 1 2 3 32 32 H 1.08992 * 109.58920 * 113.80045 * 10 9 7 33 33 H 1.09010 * 109.58466 * 353.37536 * 10 9 7 34 34 H 1.08998 * 109.49763 * 185.41025 * 11 10 9 35 35 H 1.08997 * 109.49914 * 65.31308 * 11 10 9 36 36 H 1.09000 * 109.45777 * 301.36297 * 12 11 10 37 37 H 1.09004 * 109.46896 * 55.00056 * 13 12 11 38 38 H 1.08990 * 109.47126 * 295.00096 * 13 12 11 39 39 H 0.97000 * 119.99899 * 0.02562 * 14 13 12 40 40 H 1.08996 * 109.47041 * 59.99498 * 19 17 15 41 41 H 1.08995 * 109.46983 * 179.97438 * 19 17 15 42 42 H 1.08995 * 109.47527 * 60.00015 * 20 19 17 43 43 H 1.08997 * 109.46917 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.47475 * 179.97438 * 21 20 19 45 45 H 1.08995 * 109.47179 * 300.00520 * 21 20 19 46 46 H 1.09003 * 109.47158 * 59.99832 * 22 21 20 47 47 H 1.08998 * 109.47567 * 179.97438 * 22 21 20 48 48 H 1.08998 * 109.49481 * 58.58860 * 29 12 11 49 49 H 1.08999 * 109.49640 * 178.68466 * 29 12 11 50 50 H 1.08996 * 109.58794 * 246.19781 * 30 9 7 51 51 H 1.09000 * 109.58218 * 6.62410 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0487 -1.2262 0.2950 9 7 1.3782 -2.3575 -0.3757 10 6 1.8251 -3.6576 0.1426 11 6 2.0909 -4.5949 -1.0396 12 6 0.8415 -4.6654 -1.9205 13 6 1.0914 -5.6275 -3.0836 14 7 -0.1415 -5.7873 -3.8587 15 6 -0.1593 -6.5946 -4.9377 16 8 0.8453 -7.1893 -5.2667 17 6 -1.4276 -6.7595 -5.7347 18 1 -2.1058 -5.9356 -5.5127 19 6 -2.0955 -8.0846 -5.3620 20 6 -1.1434 -9.2410 -5.6736 21 6 -0.8111 -9.2397 -7.1671 22 6 -0.1431 -7.9147 -7.5398 23 6 -1.0952 -6.7582 -7.2281 24 1 -2.0126 -6.8770 -7.8046 25 6 -0.4272 -5.4331 -7.6008 26 9 0.6695 -5.2113 -6.7610 27 9 0.0066 -5.4871 -8.9298 28 9 -1.3468 -4.3894 -7.4525 29 6 0.5235 -3.2728 -2.4700 30 6 0.2399 -2.3206 -1.3040 31 1 -0.4850 0.8400 0.0004 32 1 1.0495 -4.0833 0.7792 33 1 2.7416 -3.5262 0.7179 34 1 2.3303 -5.5910 -0.6674 35 1 2.9277 -4.2139 -1.6249 36 1 -0.0008 -5.0227 -1.3281 37 1 1.4032 -6.5962 -2.6931 38 1 1.8748 -5.2254 -3.7258 39 1 -0.9450 -5.3119 -3.5953 40 1 -2.3322 -8.0855 -4.2981 41 1 -3.0131 -8.2035 -5.9382 42 1 -0.2261 -9.1218 -5.0972 43 1 -1.6195 -10.1850 -5.4085 44 1 -0.1325 -10.0633 -7.3891 45 1 -1.7284 -9.3589 -7.7435 46 1 0.7742 -7.7954 -6.9633 47 1 0.0941 -7.9139 -8.6036 48 1 1.3751 -2.9043 -3.0419 49 1 -0.3527 -3.3280 -3.1160 50 1 -0.6650 -2.6373 -0.7854 51 1 0.1105 -1.3069 -1.6832 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089817940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:28 Heat of formation + Delta-G solvation = -191.038770 kcal Electronic energy + Delta-G solvation = -35285.894765 eV Core-core repulsion = 30383.650901 eV Total energy + Delta-G solvation = -4902.243864 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.192 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.23979 -47.74187 -47.66039 -40.78310 -38.28333 -37.14685 -34.91112 -33.02234 -32.24392 -31.57049 -30.47056 -29.84483 -27.07410 -25.93710 -24.32376 -23.30890 -22.32422 -22.18518 -21.41250 -20.89271 -20.00626 -19.05309 -18.45751 -18.38001 -17.88768 -16.93797 -16.66863 -15.81019 -15.77917 -15.16094 -14.80655 -14.61662 -14.46858 -14.37245 -14.12539 -14.03509 -13.98224 -13.86238 -13.77002 -13.68925 -13.52128 -13.34606 -13.05229 -12.80678 -12.67504 -12.56068 -12.37543 -12.27656 -12.11128 -11.80859 -11.43940 -11.38329 -11.17876 -10.97859 -10.70205 -10.67563 -10.59097 -10.51720 -10.23425 -10.22970 -9.90988 -9.60424 -9.45582 -9.30742 -8.95254 -8.45664 -6.68290 -5.79093 -3.19606 2.54001 2.56892 3.11415 3.38967 3.44731 3.46637 3.58929 3.68927 3.85091 4.36470 4.36916 4.50437 4.51815 4.74033 4.77943 4.83681 4.95060 5.02145 5.03435 5.13160 5.25407 5.30308 5.36222 5.42568 5.45385 5.53520 5.58882 5.73730 5.81357 5.87181 5.87931 5.92085 6.01531 6.04776 6.16047 6.19292 6.30315 6.46523 6.56894 6.60340 6.68110 6.76360 6.81999 6.98177 7.36066 7.50088 7.63990 7.79796 8.22124 8.44942 9.21625 9.85681 10.41815 11.29525 Molecular weight = 362.19amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.002538 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.722603 B =11027.615186 C =12003.434844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.090 4.090 13 C 0.125 3.875 14 N -0.719 5.719 15 C 0.517 3.483 16 O -0.528 6.528 17 C -0.110 4.110 18 H 0.098 0.902 19 C -0.101 4.101 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.145 4.145 23 C -0.111 4.111 24 H 0.117 0.883 25 C 0.447 3.553 26 F -0.168 7.168 27 F -0.184 7.184 28 F -0.185 7.185 29 C -0.135 4.135 30 C 0.171 3.829 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.125 0.875 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.016 0.984 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -18.928 -15.064 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.164 4.164 12 C -0.109 4.109 13 C 0.002 3.998 14 N -0.369 5.369 15 C 0.303 3.697 16 O -0.406 6.406 17 C -0.131 4.131 18 H 0.117 0.883 19 C -0.138 4.138 20 C -0.167 4.167 21 C -0.142 4.142 22 C -0.182 4.182 23 C -0.131 4.131 24 H 0.135 0.865 25 C 0.393 3.607 26 F -0.149 7.149 27 F -0.165 7.165 28 F -0.167 7.167 29 C -0.174 4.174 30 C 0.045 3.955 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.142 0.858 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.765 -19.146 -15.265 25.156 hybrid contribution -0.038 1.546 -0.021 1.547 sum -5.803 -17.600 -15.285 24.023 Atomic orbital electron populations 1.70032 1.05256 1.25584 1.53892 1.24998 0.95257 0.98390 1.01043 0.86388 0.78968 0.83401 0.78153 1.21042 1.21652 1.20899 1.19153 0.93088 0.85134 1.40817 0.91728 1.44057 1.36462 1.01146 1.49855 1.20877 0.97550 0.86865 0.92710 1.21982 0.96673 0.99199 0.98567 1.21307 0.99289 0.95435 0.94899 1.21549 0.86012 0.99325 0.92882 1.46104 1.14897 1.46960 1.28966 1.20200 0.89555 0.79056 0.80845 1.90504 1.35228 1.47211 1.67641 1.21337 0.96875 1.01898 0.93015 0.88331 1.21401 0.98407 0.91773 1.02267 1.21676 1.00437 0.97494 0.97119 1.21351 1.00139 0.96727 0.96017 1.22159 1.01170 0.92190 1.02700 1.22332 1.01698 0.91644 0.97438 0.86509 1.20693 0.77683 0.87580 0.74792 1.93250 1.55555 1.95450 1.70655 1.93163 1.90402 1.96671 1.36274 1.93189 1.66356 1.61693 1.95413 1.22247 1.00071 0.95200 0.99866 1.20766 0.88608 0.98517 0.87605 0.93629 0.96562 0.92767 0.92983 0.92074 0.91384 0.91970 0.91555 0.76485 0.90655 0.90438 0.90154 0.91716 0.91352 0.92365 0.85753 0.91406 0.92510 0.93658 0.96581 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.21 55.49 0.62 -25.44 16 2 C 0.00 0.04 4.89 -17.43 -0.09 -0.04 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.92 9.59 -15.06 -0.14 -7.06 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.64 3.00 -172.32 -0.52 -15.16 16 10 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 11 C -0.12 -2.07 5.36 -26.61 -0.14 -2.21 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 14 N -0.72 -8.55 5.27 -60.29 -0.32 -8.87 16 15 C 0.52 6.08 4.15 -10.99 -0.05 6.03 16 16 O -0.53 -7.48 10.70 5.55 0.06 -7.42 16 17 C -0.11 -0.94 2.50 -91.77 -0.23 -1.17 16 18 H 0.10 0.73 7.86 -51.93 -0.41 0.32 16 19 C -0.10 -0.69 5.44 -26.73 -0.15 -0.83 16 20 C -0.13 -1.00 5.63 -26.73 -0.15 -1.15 16 21 C -0.10 -0.77 5.92 -26.73 -0.16 -0.93 16 22 C -0.15 -1.33 4.65 -26.73 -0.12 -1.45 16 23 C -0.11 -0.97 2.06 -90.62 -0.19 -1.16 16 24 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 25 C 0.45 5.10 2.70 37.16 0.10 5.20 16 26 F -0.17 -2.38 13.54 2.25 0.03 -2.35 16 27 F -0.18 -2.15 16.55 2.25 0.04 -2.11 16 28 F -0.19 -2.17 17.05 2.25 0.04 -2.13 16 29 C -0.13 -2.44 5.25 -26.61 -0.14 -2.58 16 30 C 0.17 3.96 5.32 -3.71 -0.02 3.94 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 1.10 7.93 -51.92 -0.41 0.68 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.40 4.18 7.57 -40.82 -0.31 3.87 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.82 6.21 -51.93 -0.32 0.50 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.12 1.50 4.82 -51.95 -0.25 1.24 16 47 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.04 0.72 7.15 -51.93 -0.37 0.35 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.09 2.29 6.02 -51.93 -0.31 1.97 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -30.75 390.86 -9.15 -39.90 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.25 Total: 1.30 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.71 Total: -0.34 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.21 Total: -49.47 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.06 Total: -7.42 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.11 Total: -6.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.75 -9.15 -39.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089817940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.139 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds