Wall clock time and date at job start Tue Mar 31 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99623 * 2 1 4 4 H 1.48504 * 109.47343 * 240.00066 * 3 2 1 5 5 H 1.48492 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46689 * 120.00442 * 3 2 1 7 7 C 1.38810 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 190.98338 * 7 2 1 9 9 N 1.36934 * 119.99936 * 10.98213 * 7 2 1 10 10 C 1.46926 * 120.63267 * 31.42290 * 9 7 2 11 11 C 1.53194 * 108.77251 * 126.41471 * 10 9 7 12 12 C 1.53044 * 109.31156 * 54.63839 * 11 10 9 13 13 C 1.53005 * 109.45835 * 178.62394 * 12 11 10 14 14 N 1.46499 * 109.47102 * 185.02607 * 13 12 11 15 15 C 1.34771 * 119.99899 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00497 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99700 * 179.97438 * 15 14 13 18 18 H 1.09002 * 109.47062 * 9.38195 * 17 15 14 19 19 C 1.52997 * 109.47142 * 249.37579 * 17 15 14 20 20 C 1.53005 * 109.46816 * 180.02562 * 19 17 15 21 21 C 1.53001 * 109.47139 * 60.00338 * 20 19 17 22 22 C 1.53003 * 109.46978 * 300.00071 * 21 20 19 23 23 C 1.52992 * 109.47188 * 59.99746 * 22 21 20 24 24 H 1.08998 * 109.47384 * 60.00523 * 23 22 21 25 25 C 1.53003 * 109.47188 * 179.97438 * 23 22 21 26 26 F 1.39898 * 109.47516 * 185.50228 * 25 23 22 27 27 F 1.39904 * 109.47100 * 305.50050 * 25 23 22 28 28 F 1.39901 * 109.47155 * 65.49810 * 25 23 22 29 29 C 1.53037 * 109.53892 * 298.63394 * 12 11 10 30 30 C 1.46929 * 120.62803 * 211.45311 * 9 7 2 31 31 H 0.97002 * 120.00092 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58323 * 6.63260 * 10 9 7 33 33 H 1.08994 * 109.58872 * 246.20289 * 10 9 7 34 34 H 1.08999 * 109.49809 * 294.68448 * 11 10 9 35 35 H 1.08998 * 109.52112 * 174.60533 * 11 10 9 36 36 H 1.09001 * 109.45767 * 58.65881 * 12 11 10 37 37 H 1.08995 * 109.47375 * 305.02858 * 13 12 11 38 38 H 1.09004 * 109.46875 * 65.02934 * 13 12 11 39 39 H 0.97007 * 119.99584 * 0.02562 * 14 13 12 40 40 H 1.08990 * 109.47418 * 300.00017 * 19 17 15 41 41 H 1.08997 * 109.46748 * 60.00856 * 19 17 15 42 42 H 1.09000 * 109.46955 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47098 * 300.00438 * 20 19 17 44 44 H 1.08999 * 109.47500 * 59.99863 * 21 20 19 45 45 H 1.09003 * 109.47403 * 179.97438 * 21 20 19 46 46 H 1.08998 * 109.47175 * 180.02562 * 22 21 20 47 47 H 1.09001 * 109.46926 * 299.99430 * 22 21 20 48 48 H 1.08993 * 109.49885 * 181.31805 * 29 12 11 49 49 H 1.09004 * 109.49473 * 301.41496 * 29 12 11 50 50 H 1.08993 * 109.58688 * 353.37272 * 30 9 7 51 51 H 1.09002 * 109.58590 * 113.79924 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0754 -1.2107 0.1777 9 7 1.3444 -2.3770 -0.2270 10 6 0.1634 -2.4120 -1.1003 11 6 0.3769 -3.4819 -2.1757 12 6 0.7010 -4.8179 -1.5031 13 6 0.8812 -5.8967 -2.5730 14 7 1.0723 -7.1977 -1.9273 15 6 1.2516 -8.3027 -2.6779 16 8 1.2552 -8.2199 -3.8879 17 6 1.4489 -9.6409 -2.0136 18 1 1.2517 -9.5490 -0.9455 19 6 2.8895 -10.1093 -2.2279 20 6 3.0895 -11.4683 -1.5539 21 6 2.1257 -12.4874 -2.1651 22 6 0.6850 -12.0189 -1.9509 23 6 0.4851 -10.6600 -2.6247 24 1 0.6823 -10.7515 -3.6928 25 6 -0.9558 -10.1919 -2.4111 26 9 -1.1746 -9.0124 -3.1309 27 9 -1.8386 -11.1811 -2.8576 28 9 -1.1719 -9.9541 -1.0495 29 6 1.9922 -4.6831 -0.6928 30 6 1.7971 -3.6267 0.3993 31 1 -0.4850 0.8401 0.0004 32 1 0.0304 -1.4393 -1.5740 33 1 -0.7199 -2.6575 -0.5108 34 1 1.2052 -3.1890 -2.8209 35 1 -0.5297 -3.5852 -2.7718 36 1 -0.1168 -5.0980 -0.8392 37 1 -0.0053 -5.9321 -3.2062 38 1 1.7539 -5.6618 -3.1825 39 1 1.0691 -7.2640 -0.9595 40 1 3.0867 -10.2013 -3.2958 41 1 3.5761 -9.3831 -1.7928 42 1 4.1160 -11.8018 -1.7062 43 1 2.8922 -11.3767 -0.4859 44 1 2.3230 -12.5790 -3.2332 45 1 2.2685 -13.4557 -1.6853 46 1 -0.0016 -12.7451 -2.3859 47 1 0.4877 -11.9275 -0.8828 48 1 2.2350 -5.6410 -0.2332 49 1 2.8053 -4.3789 -1.3521 50 1 2.7419 -3.4555 0.9152 51 1 1.0470 -3.9713 1.1111 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089817941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:33 Heat of formation + Delta-G solvation = -204.325256 kcal Electronic energy + Delta-G solvation = -34702.174168 eV Core-core repulsion = 29799.354158 eV Total energy + Delta-G solvation = -4902.820009 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.192 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.33504 -47.83517 -47.75136 -40.47721 -38.43760 -37.54636 -34.94687 -32.92234 -32.36496 -31.67025 -30.67410 -29.70117 -27.10790 -26.05258 -24.39225 -23.45399 -22.47020 -22.17936 -21.10919 -20.67082 -20.28887 -19.10740 -18.58519 -18.45352 -17.94707 -17.31300 -16.66905 -15.98505 -15.36319 -15.07100 -14.86030 -14.78096 -14.67834 -14.40827 -14.39465 -14.17980 -14.05313 -13.98173 -13.87665 -13.78272 -13.56580 -13.46737 -13.17335 -13.11265 -12.74034 -12.37021 -12.32075 -12.28505 -11.92681 -11.81075 -11.74571 -11.32495 -11.22278 -11.06431 -10.94126 -10.78301 -10.73529 -10.51674 -10.24669 -10.20342 -9.98325 -9.80236 -9.53775 -9.41673 -8.99377 -8.47133 -6.60735 -5.77704 -3.25575 2.46721 2.49056 3.05857 3.38129 3.43605 3.44544 3.46509 3.58624 3.77232 4.22490 4.29018 4.42200 4.49188 4.55404 4.65423 4.72044 4.78434 4.80092 4.88989 5.13034 5.23799 5.25413 5.27730 5.39529 5.42141 5.44058 5.52177 5.56458 5.61565 5.63494 5.69504 5.87323 5.88402 5.96571 6.05353 6.15667 6.33691 6.42321 6.47728 6.61813 6.70593 6.78101 6.83046 6.98966 7.39197 7.47398 7.70014 7.79293 8.15533 8.48920 9.23479 9.85169 10.43516 11.30369 Molecular weight = 362.19amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.002160 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.675145 B =12959.701209 C =13621.469862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.124 3.876 14 N -0.719 5.719 15 C 0.509 3.491 16 O -0.535 6.535 17 C -0.104 4.104 18 H 0.099 0.901 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.117 4.117 24 H 0.125 0.875 25 C 0.448 3.552 26 F -0.171 7.171 27 F -0.183 7.183 28 F -0.182 7.182 29 C -0.126 4.126 30 C 0.145 3.855 31 H 0.254 0.746 32 H 0.088 0.912 33 H 0.017 0.983 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.046 0.954 49 H 0.059 0.941 50 H 0.052 0.948 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -27.525 -3.372 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.173 4.173 12 C -0.109 4.109 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.294 3.706 16 O -0.412 6.412 17 C -0.126 4.126 18 H 0.118 0.882 19 C -0.141 4.141 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.137 4.137 24 H 0.143 0.857 25 C 0.393 3.607 26 F -0.152 7.152 27 F -0.165 7.165 28 F -0.164 7.164 29 C -0.166 4.166 30 C 0.019 3.981 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.174 -27.254 -4.231 27.666 hybrid contribution 0.001 1.018 0.528 1.147 sum 2.175 -26.235 -3.702 26.584 Atomic orbital electron populations 1.69964 1.05261 1.25590 1.54143 1.25163 0.95400 0.98399 1.00510 0.86347 0.78840 0.83281 0.78112 1.20983 1.21603 1.20883 1.19121 0.90850 0.84048 1.44283 0.91970 1.44002 1.32416 1.03394 1.51706 1.20771 0.88211 0.96997 0.89328 1.22189 1.00179 0.95137 0.99775 1.21314 0.98679 0.94768 0.96157 1.21597 1.01519 0.80977 0.95835 1.46126 1.72759 1.07770 1.10281 1.20344 0.76821 0.85612 0.87783 1.90702 1.50214 1.86459 1.13794 1.21355 0.97731 0.92017 1.01505 0.88233 1.21433 0.92498 0.97461 1.02665 1.21592 0.99826 0.94186 1.00276 1.21515 0.93121 0.98900 1.01864 1.21638 0.98903 0.93514 1.01516 1.22416 0.88011 0.97540 1.05696 0.85673 1.20655 0.90298 0.75677 0.74024 1.93269 1.95577 1.48552 1.77838 1.93168 1.72118 1.61959 1.89247 1.93173 1.95892 1.94529 1.32803 1.22074 0.96729 0.98616 0.99161 1.20895 0.97553 0.87186 0.92477 0.93545 0.89347 0.96460 0.92464 0.93113 0.91331 0.91724 0.91597 0.76531 0.90366 0.90483 0.90920 0.91315 0.91257 0.90864 0.90063 0.90343 0.93573 0.92224 0.92931 0.96629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.22 11.07 55.49 0.61 -25.61 16 2 C 0.00 0.11 5.04 -17.43 -0.09 0.02 16 3 Si 0.90 21.67 29.57 -169.99 -5.03 16.65 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -14.67 2.98 -172.32 -0.51 -15.19 16 10 C 0.17 4.08 5.25 -3.71 -0.02 4.06 16 11 C -0.13 -2.49 5.36 -26.61 -0.14 -2.63 16 12 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 13 C 0.12 1.78 5.06 -4.04 -0.02 1.76 16 14 N -0.72 -8.72 5.27 -60.29 -0.32 -9.04 16 15 C 0.51 6.27 4.61 -10.99 -0.05 6.22 16 16 O -0.53 -8.49 16.02 5.56 0.09 -8.40 16 17 C -0.10 -0.88 1.91 -91.77 -0.18 -1.06 16 18 H 0.10 0.70 7.48 -51.93 -0.39 0.32 16 19 C -0.10 -0.72 5.19 -26.73 -0.14 -0.85 16 20 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 21 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 22 C -0.12 -0.67 4.95 -26.73 -0.13 -0.81 16 23 C -0.12 -0.96 1.65 -90.62 -0.15 -1.11 16 24 H 0.13 1.09 7.96 -51.93 -0.41 0.68 16 25 C 0.45 4.70 2.63 37.16 0.10 4.80 16 26 F -0.17 -2.31 14.68 2.25 0.03 -2.28 16 27 F -0.18 -1.92 16.58 2.25 0.04 -1.88 16 28 F -0.18 -1.91 16.29 2.25 0.04 -1.87 16 29 C -0.13 -2.06 5.25 -26.61 -0.14 -2.20 16 30 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.40 4.07 7.51 -40.82 -0.31 3.77 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 47 H 0.08 0.42 7.95 -51.93 -0.41 0.01 16 48 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 51 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -31.59 400.74 -9.14 -40.73 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.49 Total: -0.12 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.64 Total: 0.98 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.22 Total: -49.84 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.59 -9.14 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089817941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.596 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds