Wall clock time and date at job start Tue Mar 31 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00062 * 2 1 4 4 H 1.48501 * 109.46975 * 239.99905 * 3 2 1 5 5 H 1.48498 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 120.00107 * 3 2 1 7 7 C 1.38815 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99687 * 163.44220 * 7 2 1 9 9 N 1.36929 * 120.00494 * 343.44409 * 7 2 1 10 10 C 1.46924 * 120.63540 * 151.61544 * 9 7 2 11 11 C 1.53197 * 108.77458 * 126.37167 * 10 9 7 12 12 C 1.53046 * 109.31059 * 54.63894 * 11 10 9 13 13 C 1.52998 * 109.45748 * 178.62492 * 12 11 10 14 14 N 1.46501 * 109.46823 * 185.02400 * 13 12 11 15 15 C 1.34777 * 119.99908 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00083 * 180.02562 * 15 14 13 18 18 H 1.09003 * 109.46973 * 0.22297 * 17 15 14 19 19 C 1.53005 * 109.46902 * 120.21859 * 17 15 14 20 20 C 1.52998 * 109.46862 * 180.02562 * 19 17 15 21 21 C 1.52996 * 109.47538 * 300.00156 * 20 19 17 22 22 C 1.53001 * 109.47110 * 59.99663 * 21 20 19 23 23 C 1.52994 * 109.47263 * 240.21756 * 17 15 14 24 24 H 1.09003 * 109.47568 * 300.00176 * 23 17 15 25 25 C 1.53005 * 109.47078 * 60.00210 * 23 17 15 26 26 F 1.39903 * 109.47017 * 54.73054 * 25 23 17 27 27 F 1.39904 * 109.47309 * 174.73117 * 25 23 17 28 28 F 1.39896 * 109.46795 * 294.73392 * 25 23 17 29 29 C 1.53037 * 109.52566 * 298.64267 * 12 11 10 30 30 C 1.46926 * 120.62858 * 331.60240 * 9 7 2 31 31 H 0.96996 * 119.99854 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.58187 * 6.59020 * 10 9 7 33 33 H 1.09000 * 109.59370 * 246.16111 * 10 9 7 34 34 H 1.08996 * 109.49604 * 294.68920 * 11 10 9 35 35 H 1.09000 * 109.49494 * 174.58740 * 11 10 9 36 36 H 1.08996 * 109.45527 * 58.65271 * 12 11 10 37 37 H 1.08996 * 109.47557 * 305.02950 * 13 12 11 38 38 H 1.09001 * 109.46859 * 65.02836 * 13 12 11 39 39 H 0.97004 * 120.00089 * 0.02562 * 14 13 12 40 40 H 1.08999 * 109.46998 * 300.00182 * 19 17 15 41 41 H 1.09003 * 109.46949 * 60.00424 * 19 17 15 42 42 H 1.09000 * 109.46867 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46993 * 60.00450 * 20 19 17 44 44 H 1.09003 * 109.47218 * 300.00156 * 21 20 19 45 45 H 1.08999 * 109.47604 * 180.02562 * 21 20 19 46 46 H 1.09002 * 109.47069 * 179.97438 * 22 21 20 47 47 H 1.09003 * 109.46678 * 60.00161 * 22 21 20 48 48 H 1.08998 * 109.49778 * 181.31336 * 29 12 11 49 49 H 1.08998 * 109.49615 * 301.40617 * 29 12 11 50 50 H 1.09003 * 109.58828 * 353.41156 * 30 9 7 51 51 H 1.08999 * 109.58927 * 113.83807 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0567 -1.2217 -0.2660 9 7 1.3682 -2.3633 0.3389 10 6 1.8122 -3.6517 -0.2103 11 6 2.0630 -4.6217 0.9487 12 6 0.8058 -4.7083 1.8172 13 6 1.0408 -5.7023 2.9564 14 7 -0.1995 -5.8759 3.7165 15 6 -0.2307 -6.7116 4.7735 16 8 0.7683 -7.3194 5.0957 17 6 -1.5066 -6.8907 5.5551 18 1 -2.2902 -6.2716 5.1182 19 6 -1.9315 -8.3598 5.5080 20 6 -3.2273 -8.5415 6.3010 21 6 -2.9986 -8.1231 7.7547 22 6 -2.5736 -6.6540 7.8018 23 6 -1.2772 -6.4725 7.0088 24 1 -0.4936 -7.0915 7.4457 25 6 -0.8523 -5.0034 7.0559 26 9 -1.8016 -4.2218 6.3887 27 9 -0.7590 -4.5874 8.3884 28 9 0.3922 -4.8578 6.4336 29 6 0.4911 -3.3290 2.4007 30 6 0.2225 -2.3446 1.2585 31 1 -0.4850 0.8400 -0.0004 32 1 2.7341 -3.5103 -0.7743 33 1 1.0396 -4.0560 -0.8643 34 1 2.8969 -4.2611 1.5508 35 1 2.2999 -5.6089 0.5521 36 1 -0.0334 -5.0452 1.2086 37 1 1.3511 -6.6619 2.5431 38 1 1.8207 -5.3214 3.6157 39 1 -0.9985 -5.3901 3.4586 40 1 -2.0949 -8.6577 4.4723 41 1 -1.1479 -8.9788 5.9449 42 1 -3.5302 -9.5880 6.2671 43 1 -4.0107 -7.9225 5.8637 44 1 -2.2151 -8.7421 8.1921 45 1 -3.9216 -8.2530 8.3198 46 1 -2.4111 -6.3558 8.8376 47 1 -3.3570 -6.0350 7.3645 48 1 -0.3908 -3.3960 3.0378 49 1 1.3399 -2.9807 2.9892 50 1 0.0954 -1.3406 1.6636 51 1 -0.6798 -2.6421 0.7242 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089817944.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:37 Heat of formation + Delta-G solvation = -203.500797 kcal Electronic energy + Delta-G solvation = -35128.475568 eV Core-core repulsion = 30225.691310 eV Total energy + Delta-G solvation = -4902.784258 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.192 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.25882 -47.75661 -47.68102 -40.44758 -38.41926 -37.53762 -34.92924 -32.94559 -32.33897 -31.63914 -30.51541 -29.82959 -27.08501 -26.01954 -24.38254 -23.38552 -22.43713 -22.19429 -21.10022 -20.64081 -20.25478 -19.10192 -18.50724 -18.38491 -17.90088 -17.26543 -16.69514 -15.97204 -15.35436 -14.97881 -14.82740 -14.71214 -14.66501 -14.40612 -14.34666 -14.11215 -14.05401 -13.87137 -13.80308 -13.76101 -13.51257 -13.49139 -13.13504 -13.10304 -12.66928 -12.37153 -12.31573 -12.26940 -11.89808 -11.80805 -11.69835 -11.37061 -11.19498 -11.03720 -10.96682 -10.75704 -10.69835 -10.52079 -10.23028 -10.20917 -9.92136 -9.79587 -9.52240 -9.41787 -8.97000 -8.45059 -6.64769 -5.77473 -3.20008 2.49677 2.52320 3.09274 3.39588 3.45128 3.46917 3.53221 3.63755 3.82101 4.26570 4.33499 4.44415 4.51230 4.58733 4.68322 4.73831 4.80659 4.83926 4.92522 5.13683 5.26848 5.27157 5.30567 5.38222 5.43889 5.46056 5.54742 5.59456 5.60747 5.65399 5.71643 5.89882 5.91322 5.93790 6.07809 6.18124 6.30625 6.43315 6.54172 6.60043 6.69933 6.78334 6.83807 6.99983 7.38159 7.49626 7.66468 7.80847 8.17237 8.47295 9.23348 9.86795 10.43678 11.31024 Molecular weight = 362.19amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002572 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.465151 B =10885.773148 C =11799.890094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.090 4.090 13 C 0.124 3.876 14 N -0.717 5.717 15 C 0.511 3.489 16 O -0.538 6.538 17 C -0.105 4.105 18 H 0.100 0.900 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.117 4.117 24 H 0.124 0.876 25 C 0.447 3.553 26 F -0.180 7.180 27 F -0.183 7.183 28 F -0.171 7.171 29 C -0.134 4.134 30 C 0.172 3.828 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.045 0.955 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 -18.114 15.685 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.164 4.164 12 C -0.109 4.109 13 C 0.001 3.999 14 N -0.368 5.368 15 C 0.296 3.704 16 O -0.415 6.415 17 C -0.126 4.126 18 H 0.118 0.882 19 C -0.139 4.139 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.137 4.137 24 H 0.142 0.858 25 C 0.393 3.607 26 F -0.162 7.162 27 F -0.165 7.165 28 F -0.153 7.153 29 C -0.174 4.174 30 C 0.046 3.954 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.027 -18.339 15.874 25.549 hybrid contribution 0.158 1.529 -0.143 1.544 sum -7.869 -16.810 15.732 24.330 Atomic orbital electron populations 1.70014 1.05247 1.25557 1.54007 1.25045 0.95298 0.98389 1.00920 0.86375 0.78925 0.83372 0.78137 1.20892 1.21644 1.21038 1.19143 0.92396 0.84829 1.41804 0.91809 1.44035 1.35719 1.01623 1.50126 1.20882 0.97597 0.86894 0.92633 1.21986 0.96595 0.99180 0.98655 1.21307 0.99311 0.95234 0.95068 1.21566 0.85819 0.99200 0.93284 1.46122 1.14898 1.45050 1.30733 1.20336 0.89711 0.79495 0.80872 1.90693 1.35592 1.47243 1.67951 1.21356 0.97135 1.00900 0.93252 0.88212 1.21419 0.98299 0.92498 1.01685 1.21594 0.97179 1.02043 0.95099 1.21511 1.02008 0.94732 0.97123 1.21650 0.94668 0.98837 1.00421 1.22442 1.02705 0.90325 0.98261 0.85801 1.20644 0.75499 0.90891 0.73669 1.93187 1.64504 1.77735 1.80725 1.93169 1.96077 1.92022 1.35199 1.93266 1.43139 1.96449 1.82417 1.22243 1.00059 0.95301 0.99771 1.20752 0.88559 0.98113 0.87979 0.93631 0.92762 0.96549 0.92082 0.92987 0.91354 0.91950 0.91542 0.76398 0.90668 0.90264 0.90975 0.91325 0.91278 0.90867 0.90030 0.90249 0.93663 0.92528 0.89559 0.96567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.78 2.99 -172.34 -0.52 -15.30 16 10 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 11 C -0.12 -2.11 5.36 -26.61 -0.14 -2.25 16 12 C -0.09 -1.44 2.19 -90.58 -0.20 -1.63 16 13 C 0.12 1.79 5.06 -4.04 -0.02 1.77 16 14 N -0.72 -9.09 5.27 -60.29 -0.32 -9.40 16 15 C 0.51 6.47 4.29 -10.99 -0.05 6.42 16 16 O -0.54 -8.62 16.64 5.55 0.09 -8.52 16 17 C -0.10 -0.94 1.91 -91.77 -0.18 -1.11 16 18 H 0.10 0.77 7.45 -51.93 -0.39 0.38 16 19 C -0.10 -0.73 5.11 -26.73 -0.14 -0.87 16 20 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 21 C -0.12 -0.57 5.92 -26.73 -0.16 -0.73 16 22 C -0.12 -0.74 4.95 -26.70 -0.13 -0.87 16 23 C -0.12 -1.03 1.74 -90.59 -0.16 -1.19 16 24 H 0.12 1.12 8.09 -51.93 -0.42 0.70 16 25 C 0.45 5.11 2.63 37.16 0.10 5.21 16 26 F -0.18 -2.11 16.28 2.25 0.04 -2.07 16 27 F -0.18 -2.10 16.60 2.25 0.04 -2.07 16 28 F -0.17 -2.48 15.02 2.25 0.03 -2.45 16 29 C -0.13 -2.50 5.24 -26.63 -0.14 -2.64 16 30 C 0.17 4.03 5.30 -3.73 -0.02 4.01 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 4.49 7.49 -40.82 -0.31 4.19 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.48 7.68 -51.93 -0.40 0.08 16 47 H 0.08 0.48 7.94 -51.93 -0.41 0.07 16 48 H 0.04 0.75 7.15 -51.93 -0.37 0.38 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 401.48 15.07 6.05 6.05 Total: -1.00 -31.81 401.48 -9.12 -40.93 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.49 Total: 0.38 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.64 Total: 1.21 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.21 Total: -50.32 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.81 -9.12 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089817944.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.572 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds