Wall clock time and date at job start Tue Mar 31 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00062 * 2 1 4 4 H 1.48501 * 109.46975 * 239.99905 * 3 2 1 5 5 H 1.48498 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 120.00107 * 3 2 1 7 7 C 1.38815 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99687 * 163.44220 * 7 2 1 9 9 N 1.36929 * 120.00494 * 343.44409 * 7 2 1 10 10 C 1.46924 * 120.63540 * 151.61544 * 9 7 2 11 11 C 1.53197 * 108.77458 * 126.37167 * 10 9 7 12 12 C 1.53046 * 109.31059 * 54.63894 * 11 10 9 13 13 C 1.52998 * 109.45748 * 178.62492 * 12 11 10 14 14 N 1.46501 * 109.46823 * 185.02400 * 13 12 11 15 15 C 1.34777 * 119.99908 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00083 * 180.02562 * 15 14 13 18 18 H 1.09003 * 109.46973 * 0.22297 * 17 15 14 19 19 C 1.53005 * 109.46902 * 120.21859 * 17 15 14 20 20 C 1.52998 * 109.46862 * 180.02562 * 19 17 15 21 21 C 1.52996 * 109.47538 * 300.00156 * 20 19 17 22 22 C 1.53001 * 109.47110 * 59.99663 * 21 20 19 23 23 C 1.52994 * 109.47263 * 240.21756 * 17 15 14 24 24 H 1.09003 * 109.47568 * 300.00176 * 23 17 15 25 25 C 1.53005 * 109.47078 * 60.00210 * 23 17 15 26 26 F 1.39903 * 109.47017 * 54.73054 * 25 23 17 27 27 F 1.39904 * 109.47309 * 174.73117 * 25 23 17 28 28 F 1.39896 * 109.46795 * 294.73392 * 25 23 17 29 29 C 1.53037 * 109.52566 * 298.64267 * 12 11 10 30 30 C 1.46926 * 120.62858 * 331.60240 * 9 7 2 31 31 H 0.96996 * 119.99854 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.58187 * 6.59020 * 10 9 7 33 33 H 1.09000 * 109.59370 * 246.16111 * 10 9 7 34 34 H 1.08996 * 109.49604 * 294.68920 * 11 10 9 35 35 H 1.09000 * 109.49494 * 174.58740 * 11 10 9 36 36 H 1.08996 * 109.45527 * 58.65271 * 12 11 10 37 37 H 1.08996 * 109.47557 * 305.02950 * 13 12 11 38 38 H 1.09001 * 109.46859 * 65.02836 * 13 12 11 39 39 H 0.97004 * 120.00089 * 0.02562 * 14 13 12 40 40 H 1.08999 * 109.46998 * 300.00182 * 19 17 15 41 41 H 1.09003 * 109.46949 * 60.00424 * 19 17 15 42 42 H 1.09000 * 109.46867 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46993 * 60.00450 * 20 19 17 44 44 H 1.09003 * 109.47218 * 300.00156 * 21 20 19 45 45 H 1.08999 * 109.47604 * 180.02562 * 21 20 19 46 46 H 1.09002 * 109.47069 * 179.97438 * 22 21 20 47 47 H 1.09003 * 109.46678 * 60.00161 * 22 21 20 48 48 H 1.08998 * 109.49778 * 181.31336 * 29 12 11 49 49 H 1.08998 * 109.49615 * 301.40617 * 29 12 11 50 50 H 1.09003 * 109.58828 * 353.41156 * 30 9 7 51 51 H 1.08999 * 109.58927 * 113.83807 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0567 -1.2217 -0.2660 9 7 1.3682 -2.3633 0.3389 10 6 1.8122 -3.6517 -0.2103 11 6 2.0630 -4.6217 0.9487 12 6 0.8058 -4.7083 1.8172 13 6 1.0408 -5.7023 2.9564 14 7 -0.1995 -5.8759 3.7165 15 6 -0.2307 -6.7116 4.7735 16 8 0.7683 -7.3194 5.0957 17 6 -1.5066 -6.8907 5.5551 18 1 -2.2902 -6.2716 5.1182 19 6 -1.9315 -8.3598 5.5080 20 6 -3.2273 -8.5415 6.3010 21 6 -2.9986 -8.1231 7.7547 22 6 -2.5736 -6.6540 7.8018 23 6 -1.2772 -6.4725 7.0088 24 1 -0.4936 -7.0915 7.4457 25 6 -0.8523 -5.0034 7.0559 26 9 -1.8016 -4.2218 6.3887 27 9 -0.7590 -4.5874 8.3884 28 9 0.3922 -4.8578 6.4336 29 6 0.4911 -3.3290 2.4007 30 6 0.2225 -2.3446 1.2585 31 1 -0.4850 0.8400 -0.0004 32 1 2.7341 -3.5103 -0.7743 33 1 1.0396 -4.0560 -0.8643 34 1 2.8969 -4.2611 1.5508 35 1 2.2999 -5.6089 0.5521 36 1 -0.0334 -5.0452 1.2086 37 1 1.3511 -6.6619 2.5431 38 1 1.8207 -5.3214 3.6157 39 1 -0.9985 -5.3901 3.4586 40 1 -2.0949 -8.6577 4.4723 41 1 -1.1479 -8.9788 5.9449 42 1 -3.5302 -9.5880 6.2671 43 1 -4.0107 -7.9225 5.8637 44 1 -2.2151 -8.7421 8.1921 45 1 -3.9216 -8.2530 8.3198 46 1 -2.4111 -6.3558 8.8376 47 1 -3.3570 -6.0350 7.3645 48 1 -0.3908 -3.3960 3.0378 49 1 1.3399 -2.9807 2.9892 50 1 0.0954 -1.3406 1.6636 51 1 -0.6798 -2.6421 0.7242 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089817944.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:35 Heat of formation + Delta-G solvation = -221.379133 kcal Electronic energy + Delta-G solvation = -35129.250831 eV Core-core repulsion = 30225.691310 eV Total energy + Delta-G solvation = -4903.559521 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.192 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.19770 -48.69537 -48.65370 -41.35434 -39.62637 -38.63683 -36.38009 -34.54255 -33.00029 -32.60597 -31.91233 -31.52798 -28.53530 -26.92971 -25.86250 -24.37210 -23.82574 -23.13343 -22.55665 -21.55512 -21.00931 -20.64871 -19.41382 -19.30926 -18.82178 -18.64428 -18.11326 -16.98807 -16.82712 -16.40200 -15.84324 -15.68319 -15.59124 -15.41341 -15.31439 -15.21355 -15.10680 -14.98480 -14.92294 -14.80811 -14.79532 -14.61042 -14.57539 -14.05458 -13.89032 -13.68406 -13.57040 -13.17753 -13.08702 -12.95828 -12.81243 -12.56430 -12.51228 -12.32811 -12.22916 -11.98867 -11.86262 -11.76774 -11.61872 -11.48933 -11.28540 -11.24132 -11.14663 -10.68864 -10.53676 -10.08570 -8.66880 -7.88061 -5.33127 1.44722 1.47336 1.52863 1.53787 1.68413 2.14213 2.50226 2.70352 2.85348 2.98116 3.26215 3.52038 3.58950 3.70246 3.83716 3.84459 3.93596 3.97802 4.03849 4.10892 4.17159 4.22948 4.36374 4.37716 4.51852 4.53668 4.66968 4.72762 4.73658 4.77507 4.84940 4.91379 4.96335 5.02511 5.12635 5.14217 5.15595 5.23614 5.27512 5.28389 5.30228 5.40667 5.41150 5.50528 5.55002 5.65282 5.77520 6.39438 6.49763 7.15363 7.18377 7.87449 8.38229 9.17823 Molecular weight = 362.19amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002572 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.465151 B =10885.773148 C =11799.890094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.612 5.612 10 C 0.141 3.859 11 C -0.115 4.115 12 C -0.078 4.078 13 C 0.137 3.863 14 N -0.716 5.716 15 C 0.509 3.491 16 O -0.574 6.574 17 C -0.100 4.100 18 H 0.116 0.884 19 C -0.098 4.098 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.110 4.110 24 H 0.119 0.881 25 C 0.439 3.561 26 F -0.182 7.182 27 F -0.185 7.185 28 F -0.193 7.193 29 C -0.119 4.119 30 C 0.178 3.822 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.409 0.591 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.048 0.952 51 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -19.862 16.452 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.016 3.984 11 C -0.154 4.154 12 C -0.097 4.097 13 C 0.013 3.987 14 N -0.367 5.367 15 C 0.296 3.704 16 O -0.453 6.453 17 C -0.122 4.122 18 H 0.134 0.866 19 C -0.136 4.136 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.130 4.130 24 H 0.137 0.863 25 C 0.386 3.614 26 F -0.164 7.164 27 F -0.167 7.167 28 F -0.175 7.175 29 C -0.158 4.158 30 C 0.053 3.947 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.246 0.754 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -9.017 -20.107 16.639 27.613 hybrid contribution 0.489 2.071 -0.402 2.166 sum -8.528 -18.037 16.236 25.723 Atomic orbital electron populations 1.70159 1.06511 1.25838 1.55375 1.25773 0.96092 1.01370 1.01331 0.85392 0.77653 0.79476 0.78250 1.20010 1.21858 1.20792 1.19463 0.92654 0.86206 1.41127 0.91905 1.44320 1.35866 1.02474 1.50946 1.21052 0.97349 0.85895 0.94099 1.21861 0.96670 0.99690 0.97220 1.21164 0.99253 0.93799 0.95486 1.21275 0.86191 0.98827 0.92364 1.46102 1.14593 1.45224 1.30807 1.20972 0.90522 0.78421 0.80472 1.90675 1.37243 1.48599 1.68797 1.21433 0.95406 1.02630 0.92691 0.86570 1.21437 0.99099 0.90710 1.02339 1.21593 0.95997 1.03107 0.94750 1.21528 1.02801 0.93465 0.97305 1.21704 0.93219 1.00122 1.00175 1.22494 1.03957 0.87962 0.98590 0.86308 1.21144 0.74670 0.92317 0.73316 1.93176 1.64357 1.78049 1.80784 1.93159 1.96043 1.92203 1.35264 1.93221 1.44747 1.96653 1.82870 1.22014 1.00240 0.95651 0.97931 1.20559 0.87857 0.97354 0.88957 0.94123 0.92938 0.96317 0.93040 0.89577 0.90161 0.90960 0.93387 0.75419 0.90302 0.91404 0.89684 0.90437 0.91299 0.89119 0.89595 0.89617 0.91642 0.94232 0.93335 0.98017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 11.19 21.65 0.24 -55.32 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.96 45.68 29.59 68.60 2.03 47.70 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.26 -14.80 9.58 84.04 0.81 -14.00 16 8 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 9 N -0.61 -30.97 2.99 -699.15 -2.09 -33.07 16 10 C 0.14 5.78 6.52 86.36 0.56 6.34 16 11 C -0.11 -3.72 5.36 30.68 0.16 -3.55 16 12 C -0.08 -2.37 2.19 -10.77 -0.02 -2.39 16 13 C 0.14 3.75 5.06 86.38 0.44 4.18 16 14 N -0.72 -17.07 5.27 -463.06 -2.44 -19.51 16 15 C 0.51 12.30 4.29 87.66 0.38 12.68 16 16 O -0.57 -18.08 16.64 -3.06 -0.05 -18.13 16 17 C -0.10 -1.61 1.91 -11.54 -0.02 -1.64 16 18 H 0.12 1.49 7.45 -2.39 -0.02 1.47 16 19 C -0.10 -1.20 5.11 30.60 0.16 -1.04 16 20 C -0.12 -0.84 5.92 30.59 0.18 -0.65 16 21 C -0.11 -0.78 5.92 30.59 0.18 -0.60 16 22 C -0.11 -1.17 4.95 30.61 0.15 -1.01 16 23 C -0.11 -1.78 1.74 -10.78 -0.02 -1.80 16 24 H 0.12 2.07 8.09 -2.39 -0.02 2.05 16 25 C 0.44 9.73 2.63 71.98 0.19 9.92 16 26 F -0.18 -4.06 16.28 44.97 0.73 -3.33 16 27 F -0.19 -4.14 16.60 44.97 0.75 -3.40 16 28 F -0.19 -5.60 15.02 44.97 0.68 -4.93 16 29 C -0.12 -4.40 5.24 30.66 0.16 -4.24 16 30 C 0.18 8.56 5.30 86.35 0.46 9.01 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.41 8.36 7.49 -92.70 -0.69 7.67 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 42 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.09 0.83 7.68 -2.39 -0.02 0.81 16 47 H 0.09 0.79 7.94 -2.39 -0.02 0.77 16 48 H 0.07 2.13 7.15 -2.39 -0.02 2.11 16 49 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.05 2.68 6.06 -2.39 -0.01 2.67 16 51 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -70.48 401.48 4.26 -66.22 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.24 Total: 14.98 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.18 Total: 8.77 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.29 Total: -107.90 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.05 Total: -18.13 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 2.15 Total: -11.65 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.48 4.26 -66.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089817944.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.158 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds