Wall clock time and date at job start Tue Mar 31 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75884 * 125.19073 * 2 1 4 4 C 1.75892 * 90.97687 * 180.02562 * 3 2 1 5 5 Br 1.89101 * 125.20475 * 179.97438 * 4 3 2 6 6 C 1.33474 * 109.58340 * 359.73081 * 4 3 2 7 7 C 1.33357 * 125.19571 * 180.02562 * 2 1 3 8 8 S 1.76208 * 122.53535 * 359.97438 * 7 2 1 9 9 O 1.42095 * 106.39938 * 181.46227 * 8 7 2 10 10 O 1.42101 * 106.39635 * 48.53950 * 8 7 2 11 11 N 1.65598 * 107.21470 * 295.00199 * 8 7 2 12 12 C 1.36945 * 119.99848 * 90.00337 * 11 8 7 13 13 H 1.07997 * 120.00238 * 7.87639 * 12 11 8 14 14 C 1.38812 * 119.99732 * 187.88279 * 12 11 8 15 15 N 1.31621 * 120.00146 * 25.11011 * 14 12 11 16 16 Si 1.86796 * 119.99751 * 205.11555 * 14 12 11 17 17 H 1.48498 * 109.47426 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47541 * 120.00027 * 16 14 12 19 19 H 1.48504 * 109.46868 * 239.99831 * 16 14 12 20 20 C 1.46496 * 120.00271 * 269.99194 * 11 8 7 21 21 C 1.47207 * 109.46947 * 93.19610 * 20 11 8 22 22 N 4.38360 * 102.05491 * 109.93017 * 2 1 3 23 23 H 1.09000 * 109.47194 * 269.98137 * 1 2 3 24 24 H 1.09006 * 109.46886 * 29.97614 * 1 2 3 25 25 H 1.08999 * 109.47113 * 149.97652 * 1 2 3 26 26 H 1.07995 * 122.55463 * 180.24287 * 6 4 3 27 27 H 0.97002 * 120.00071 * 180.02562 * 15 14 12 28 28 H 1.08996 * 109.47613 * 213.19883 * 20 11 8 29 29 H 1.08998 * 109.47255 * 333.20158 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5206 1.4374 0.0000 4 6 3.9751 0.4484 -0.0008 5 35 5.7455 1.1131 -0.0020 6 6 3.6380 -0.8431 0.0049 7 6 2.2756 -1.0898 -0.0005 8 16 1.6079 -2.7204 -0.0006 9 8 2.7169 -3.6081 0.0337 10 8 0.6202 -2.7494 -1.0218 11 7 0.8040 -2.9209 1.4333 12 6 -0.5233 -2.5964 1.5253 13 1 -1.0773 -2.3316 0.6369 14 6 -1.1565 -2.6078 2.7605 15 7 -0.4554 -2.4358 3.8611 16 14 -3.0036 -2.8672 2.8607 17 1 -3.5551 -3.0345 1.4921 18 1 -3.2899 -4.0841 3.6623 19 1 -3.6346 -1.6888 3.5076 20 6 1.5126 -3.4455 2.6032 21 6 2.0264 -2.3256 3.4086 22 7 2.4225 -1.4613 4.0302 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.3720 -1.6353 0.0094 27 1 -0.8978 -2.4441 4.7243 28 1 0.8275 -4.0421 3.2057 29 1 2.3445 -4.0686 2.2749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094870551.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:17 Heat of formation + Delta-G solvation = 3.699296 kcal Electronic energy + Delta-G solvation = -20843.364263 eV Core-core repulsion = 17453.589871 eV Total energy + Delta-G solvation = -3389.774392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 363.934 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -37.64552 -36.83780 -36.18101 -34.69542 -34.53494 -32.43644 -31.88734 -30.31583 -27.62931 -25.93162 -24.24849 -23.05291 -19.77296 -18.71782 -17.85172 -17.08060 -16.98288 -16.42229 -15.69271 -14.78997 -14.63923 -14.00558 -13.80936 -13.61556 -13.13130 -12.96157 -12.60500 -12.44230 -12.30616 -11.88912 -11.75570 -11.59463 -11.41338 -11.33892 -11.15195 -11.00928 -10.84759 -10.66925 -10.58711 -10.36855 -10.20598 -10.19243 -10.01467 -9.69377 -8.65706 -8.45378 -8.26504 -6.91274 -4.25193 0.94864 1.21536 1.38839 1.96893 2.18164 2.56400 2.94004 3.04945 3.11510 3.62587 3.84452 4.08538 4.40051 4.46700 4.78307 5.08016 5.25101 5.34842 5.61674 5.84265 5.92944 6.00669 6.06832 6.26271 6.39739 6.49721 6.60127 6.77906 7.01671 7.89102 8.30068 8.71853 8.81480 10.07235 Molecular weight = 363.93amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.004273 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.402860 B = 6551.124152 C = 6607.428999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.023 4.023 3 S 0.128 5.872 4 C -0.224 4.224 5 Br -0.006 7.006 6 C -0.013 4.013 7 C -0.692 4.692 8 S 2.550 3.450 9 O -0.990 6.990 10 O -0.973 6.973 11 N -0.795 5.795 12 C -0.251 4.251 13 H 0.131 0.869 14 C 0.033 3.967 15 N -0.829 5.829 16 Si 0.932 3.068 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.278 1.278 20 C 0.227 3.773 21 C 0.241 3.759 22 N -0.473 5.473 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.153 0.847 27 H 0.283 0.717 28 H 0.133 0.867 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 3.613 -4.037 6.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 S 0.391 5.609 4 C -0.420 4.420 5 Br 0.077 6.923 6 C -0.046 4.046 7 C -0.781 4.781 8 S 2.646 3.354 9 O -0.980 6.980 10 O -0.962 6.962 11 N -0.618 5.618 12 C -0.398 4.398 13 H 0.148 0.852 14 C -0.179 4.179 15 N -0.469 5.469 16 Si 0.756 3.244 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.204 1.204 20 C 0.097 3.903 21 C -0.079 4.079 22 N -0.153 5.153 23 H 0.123 0.877 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.171 0.829 27 H 0.094 0.906 28 H 0.150 0.850 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.530 6.189 -3.809 8.564 hybrid contribution -0.680 -0.904 0.380 1.194 sum 3.850 5.285 -3.429 7.383 Atomic orbital electron populations 1.21222 0.86376 1.05291 1.05449 1.24544 1.00201 0.94025 0.95628 1.83985 0.94769 1.09862 1.72314 1.25882 0.94789 0.99018 1.22329 1.96592 1.10852 1.86656 1.98174 1.19770 0.94929 0.94941 0.94968 1.31152 1.00964 1.28070 1.17931 1.11008 0.72485 0.74939 0.76929 1.93353 1.53604 1.63605 1.87433 1.93361 1.58352 1.86745 1.57754 1.55289 1.14556 1.65597 1.26392 1.20286 0.80645 1.42832 0.96026 0.85187 1.25593 1.01541 0.96034 0.94782 1.69944 1.37411 1.40297 0.99198 0.85749 0.80396 0.78599 0.79633 1.18185 1.19776 1.20427 1.18962 0.96717 0.89151 0.85465 1.29447 0.89843 0.95013 0.93552 1.80877 1.14130 1.10287 1.10036 0.87694 0.91038 0.86722 0.82919 0.90584 0.84952 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.69 36.01 0.31 -1.77 15 2 C -0.02 -0.43 6.49 -36.01 -0.23 -0.66 15 3 S 0.13 2.15 23.33 -107.50 -2.51 -0.36 15 4 C -0.22 -4.00 6.97 29.07 0.20 -3.79 15 5 Br -0.01 -0.09 34.07 -68.01 -2.32 -2.41 15 6 C -0.01 -0.26 9.62 -41.17 -0.40 -0.65 15 7 C -0.69 -13.82 5.83 -41.21 -0.24 -14.06 15 8 S 2.55 53.35 5.23 -107.50 -0.56 52.79 15 9 O -0.99 -21.81 15.91 -57.17 -0.91 -22.72 15 10 O -0.97 -21.69 14.82 -57.17 -0.85 -22.54 15 11 N -0.79 -16.14 2.88 -62.77 -0.18 -16.32 15 12 C -0.25 -5.07 7.45 -15.06 -0.11 -5.19 15 13 H 0.13 2.56 5.83 -52.49 -0.31 2.25 15 14 C 0.03 0.66 4.91 -17.43 -0.09 0.58 15 15 N -0.83 -17.44 8.98 55.49 0.50 -16.94 15 16 Si 0.93 16.01 29.62 -169.99 -5.04 10.97 15 17 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 18 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 19 H -0.28 -4.93 7.11 56.52 0.40 -4.53 15 20 C 0.23 4.33 5.45 -6.83 -0.04 4.29 15 21 C 0.24 5.15 13.26 -20.76 -0.28 4.87 15 22 N -0.47 -10.98 18.54 42.15 0.78 -10.20 15 23 H 0.10 1.80 7.45 -51.93 -0.39 1.41 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 25 H 0.11 2.02 4.46 -51.93 -0.23 1.79 15 26 H 0.15 2.82 7.74 -52.49 -0.41 2.41 15 27 H 0.28 5.74 8.31 -40.82 -0.34 5.40 15 28 H 0.13 2.41 6.49 -51.93 -0.34 2.07 15 29 H 0.10 1.73 6.95 -51.93 -0.36 1.37 15 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -26.16 298.74 -9.03 -35.19 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.59 Total: 4.44 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.87 Total: -16.40 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 1.10 Total: -43.46 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.76 Total: -45.26 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -5.04 Total: 10.97 kcal Atomic # 16 Polarization: 55.50 SS G_CDS: -3.07 Total: 52.43 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.32 Total: -2.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.16 -9.03 -35.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094870551.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.887 kcal (2) G-P(sol) polarization free energy of solvation -26.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds