Wall clock time and date at job start Tue Mar 31 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00361 * 2 1 4 4 C 1.50705 * 120.00062 * 179.97438 * 2 1 3 5 5 N 1.46900 * 109.47067 * 96.76343 * 4 2 1 6 6 C 1.46902 * 110.99722 * 164.20358 * 5 4 2 7 7 C 1.52992 * 109.47531 * 287.60056 * 6 5 4 8 8 C 1.46902 * 111.00312 * 288.16245 * 5 4 2 9 9 C 1.50704 * 109.46904 * 169.99970 * 8 5 4 10 10 O 1.21292 * 119.99929 * 359.97438 * 9 8 5 11 11 N 1.34771 * 119.99780 * 180.02562 * 9 8 5 12 12 C 1.40142 * 119.99937 * 185.43894 * 11 9 8 13 13 C 1.38647 * 120.09971 * 332.39986 * 12 11 9 14 14 C 1.38253 * 120.00981 * 179.72327 * 13 12 11 15 15 C 1.38296 * 120.20563 * 0.27421 * 14 13 12 16 16 C 1.38196 * 120.20412 * 0.02562 * 15 14 13 17 17 C 1.38783 * 119.98712 * 359.97438 * 16 15 14 18 18 S 1.76205 * 120.10224 * 180.02562 * 17 16 15 19 19 C 1.81395 * 103.00165 * 355.93695 * 18 17 16 20 20 H 1.09004 * 109.46746 * 49.96627 * 19 18 17 21 21 C 1.53001 * 109.47294 * 289.96688 * 19 18 17 22 22 C 1.50703 * 109.47222 * 169.96805 * 19 18 17 23 23 H 1.07995 * 119.99767 * 359.97438 * 22 19 18 24 24 C 1.37874 * 120.00043 * 180.02562 * 22 19 18 25 25 N 1.31519 * 120.00040 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 119.99924 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47265 * 59.99949 * 26 24 22 28 28 H 1.48503 * 109.47232 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47281 * 299.99947 * 26 24 22 30 30 H 1.07998 * 119.99706 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00462 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47018 * 275.09541 * 3 2 1 33 33 H 1.08999 * 109.46964 * 35.09550 * 3 2 1 34 34 H 1.09004 * 109.46912 * 155.09600 * 3 2 1 35 35 H 1.09005 * 109.46455 * 336.76854 * 4 2 1 36 36 H 1.08993 * 109.47456 * 216.76840 * 4 2 1 37 37 H 1.08997 * 109.46947 * 47.60404 * 6 5 4 38 38 H 1.09006 * 109.46991 * 167.60134 * 6 5 4 39 39 H 1.08999 * 109.47368 * 308.13120 * 7 6 5 40 40 H 1.09010 * 109.47038 * 68.12637 * 7 6 5 41 41 H 1.09000 * 109.47360 * 188.12396 * 7 6 5 42 42 H 1.09000 * 109.47162 * 49.99693 * 8 5 4 43 43 H 1.09000 * 109.47018 * 289.99912 * 8 5 4 44 44 H 0.97002 * 119.99904 * 5.43750 * 11 9 8 45 45 H 1.07998 * 119.99603 * 0.02562 * 13 12 11 46 46 H 1.07990 * 119.89470 * 180.25571 * 14 13 12 47 47 H 1.08005 * 119.89543 * 179.97438 * 15 14 13 48 48 H 1.08002 * 120.00734 * 180.02562 * 16 15 14 49 49 H 1.08998 * 109.47085 * 182.59241 * 21 19 18 50 50 H 1.09000 * 109.47187 * 302.59700 * 21 19 18 51 51 H 1.09001 * 109.46872 * 62.59588 * 21 19 18 52 52 H 0.96998 * 120.00080 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4496 -1.6482 -1.3746 6 6 3.4863 -2.6890 -1.3862 7 6 4.8156 -2.0900 -0.9227 8 6 1.2803 -2.0609 -2.1624 9 6 1.6657 -2.1670 -3.6154 10 8 2.8023 -1.9224 -3.9608 11 7 0.7470 -2.5327 -4.5312 12 6 1.1299 -2.7422 -5.8629 13 6 2.2240 -2.0700 -6.3857 14 6 2.6036 -2.2823 -7.6981 15 6 1.8915 -3.1601 -8.4950 16 6 0.7959 -3.8300 -7.9846 17 6 0.4076 -3.6231 -6.6684 18 16 -0.9886 -4.4762 -6.0143 19 6 -1.6261 -5.3788 -7.4528 20 1 -0.8106 -5.9198 -7.9328 21 6 -2.2360 -4.3885 -8.4470 22 6 -2.6824 -6.3559 -7.0050 23 1 -2.9437 -6.4271 -5.9596 24 6 -3.3144 -7.1597 -7.9299 25 7 -2.9958 -7.0733 -9.2030 26 14 -4.6232 -8.3714 -7.3748 27 1 -5.7344 -7.6347 -6.7209 28 1 -5.1443 -9.1111 -8.5523 29 1 -4.0308 -9.3323 -6.4098 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 2.1662 1.6653 -1.0236 33 1 1.5171 2.0402 0.5908 34 1 3.0525 1.1536 0.4328 35 1 1.4272 -2.0917 0.4063 36 1 2.9580 -1.2080 0.6156 37 1 3.1976 -3.4968 -0.7137 38 1 3.5970 -3.0803 -2.3976 39 1 5.0327 -1.1939 -1.5040 40 1 4.7483 -1.8302 0.1338 41 1 5.6128 -2.8191 -1.0675 42 1 0.4871 -1.3219 -2.0498 43 1 0.9273 -3.0295 -1.8084 44 1 -0.1793 -2.6509 -4.2685 45 1 2.7828 -1.3840 -5.7664 46 1 3.4586 -1.7609 -8.1022 47 1 2.1922 -3.3219 -9.5196 48 1 0.2424 -4.5152 -8.6096 49 1 -2.6600 -4.9344 -9.2897 50 1 -3.0207 -3.8151 -7.9535 51 1 -1.4616 -3.7106 -8.8059 52 1 -3.4407 -7.6385 -9.8538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095397345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:57 Heat of formation + Delta-G solvation = 1.443004 kcal Electronic energy + Delta-G solvation = -30052.598757 eV Core-core repulsion = 26143.311140 eV Total energy + Delta-G solvation = -3909.287617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68000 -39.82657 -38.61916 -36.28993 -35.81480 -35.47673 -32.83746 -32.17764 -31.55509 -30.69019 -28.67918 -28.06737 -27.39048 -25.80112 -24.15029 -23.78889 -23.12477 -22.31742 -21.25907 -19.48789 -19.40107 -18.33951 -18.11751 -17.82949 -16.99283 -16.83935 -16.57985 -16.18709 -16.07408 -15.78677 -15.47793 -15.10085 -15.03889 -14.92668 -14.68524 -14.53767 -14.30660 -14.18569 -13.85738 -13.71204 -13.53665 -13.25560 -12.99928 -12.87508 -12.82035 -12.74128 -12.66450 -12.55966 -12.45104 -12.35895 -12.23151 -11.91226 -11.82211 -11.70193 -11.45306 -11.36557 -10.83829 -10.66745 -10.51967 -10.46088 -10.00633 -9.35642 -9.26000 -8.24757 -8.14312 -6.41554 0.22985 0.38040 0.83845 1.25616 1.42440 1.43048 1.51458 1.54164 1.82811 1.98216 2.37731 2.80191 3.01564 3.05073 3.58297 3.87176 3.93987 4.00708 4.12531 4.17734 4.19605 4.30448 4.40276 4.44440 4.51896 4.55119 4.57987 4.60002 4.65358 4.69439 4.80137 4.81455 4.87163 4.90223 4.92656 5.00903 5.08959 5.11262 5.20311 5.21004 5.30657 5.33848 5.36446 5.48466 5.56966 5.59161 5.70797 5.75316 5.81725 6.01670 6.02345 6.05314 6.08767 6.38873 6.60815 7.05654 7.26089 8.80587 Molecular weight = 362.18amu Principal moments of inertia in cm(-1) A = 0.011312 B = 0.002413 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.554994 B =11599.251560 C =12993.657803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.110 4.110 4 C 0.087 3.913 5 N -0.524 5.524 6 C 0.047 3.953 7 C -0.135 4.135 8 C 0.039 3.961 9 C 0.515 3.485 10 O -0.529 6.529 11 N -0.661 5.661 12 C 0.148 3.852 13 C -0.127 4.127 14 C -0.110 4.110 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.115 4.115 18 S -0.167 6.167 19 C 0.098 3.902 20 H 0.023 0.977 21 C -0.130 4.130 22 C -0.533 4.533 23 H 0.060 0.940 24 C 0.027 3.973 25 N -0.909 5.909 26 Si 0.966 3.034 27 H -0.268 1.268 28 H -0.279 1.279 29 H -0.271 1.271 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.417 0.583 45 H 0.151 0.849 46 H 0.154 0.846 47 H 0.146 0.854 48 H 0.118 0.882 49 H 0.073 0.927 50 H 0.037 0.963 51 H 0.036 0.964 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.507 13.580 15.738 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.124 4.124 3 C -0.167 4.167 4 C -0.040 4.040 5 N -0.248 5.248 6 C -0.081 4.081 7 C -0.192 4.192 8 C -0.092 4.092 9 C 0.303 3.697 10 O -0.405 6.405 11 N -0.306 5.306 12 C 0.047 3.953 13 C -0.148 4.148 14 C -0.131 4.131 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.230 4.230 18 S 0.079 5.921 19 C -0.030 4.030 20 H 0.041 0.959 21 C -0.189 4.189 22 C -0.572 4.572 23 H 0.079 0.921 24 C -0.175 4.175 25 N -0.546 5.546 26 Si 0.791 3.209 27 H -0.193 1.193 28 H -0.204 1.204 29 H -0.196 1.196 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.098 0.902 44 H 0.255 0.745 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.164 0.836 48 H 0.136 0.864 49 H 0.092 0.908 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.949 14.008 16.348 24.153 hybrid contribution -1.163 -1.714 -1.092 2.342 sum 9.786 12.294 15.256 21.901 Atomic orbital electron populations 1.23898 0.95192 1.02644 1.01601 1.21754 0.95297 0.95825 0.99552 1.20757 1.00126 0.94045 1.01789 1.21311 1.00071 0.94250 0.88323 1.61657 1.08777 1.41941 1.12467 1.22186 0.92518 0.92186 1.01178 1.21651 0.95307 1.01134 1.01131 1.21998 0.95551 1.03081 0.88583 1.21152 0.84599 0.75336 0.88575 1.90590 1.20910 1.47849 1.81177 1.43571 1.13082 1.67630 1.06362 1.17387 0.97216 0.96566 0.84182 1.21587 0.96787 1.00155 0.96291 1.21367 1.00357 0.98444 0.92930 1.21309 0.94624 0.96977 1.01046 1.21299 0.98935 1.01385 0.94011 1.21755 1.01634 1.01531 0.98074 1.84656 1.28300 1.55187 1.23938 1.20820 0.97370 0.94453 0.90338 0.95873 1.21960 0.99279 0.97129 1.00564 1.20859 1.21324 1.20609 0.94405 0.92136 1.25666 0.98688 0.98370 0.94745 1.69958 1.42976 1.39881 1.01828 0.85476 0.78917 0.78637 0.77893 1.19304 1.20420 1.19636 0.87618 0.88032 0.92275 0.91233 0.91691 0.93186 0.88749 0.94241 0.91882 0.92915 0.91733 0.91892 0.85907 0.90161 0.74515 0.83163 0.82803 0.83617 0.86399 0.90818 0.94414 0.94493 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 12.53 67.79 0.85 -1.74 16 2 C -0.12 -1.79 5.11 -16.48 -0.08 -1.87 16 3 C -0.11 -1.49 10.02 71.24 0.71 -0.77 16 4 C 0.09 1.28 4.98 85.56 0.43 1.71 16 5 N -0.52 -10.11 4.14 -905.36 -3.75 -13.86 16 6 C 0.05 0.94 5.24 86.30 0.45 1.39 16 7 C -0.13 -2.30 9.83 71.98 0.71 -1.59 16 8 C 0.04 0.76 5.28 85.56 0.45 1.21 16 9 C 0.51 13.81 7.27 87.66 0.64 14.45 16 10 O -0.53 -16.78 11.48 -3.07 -0.04 -16.82 16 11 N -0.66 -19.06 5.14 -303.01 -1.56 -20.62 16 12 C 0.15 5.01 6.44 38.22 0.25 5.26 16 13 C -0.13 -3.99 8.78 22.37 0.20 -3.80 16 14 C -0.11 -3.06 10.04 22.29 0.22 -2.84 16 15 C -0.12 -3.61 10.04 22.27 0.22 -3.39 16 16 C -0.13 -4.92 8.07 22.39 0.18 -4.74 16 17 C -0.11 -4.37 6.07 22.71 0.14 -4.23 16 18 S -0.17 -6.96 19.98 -56.49 -1.13 -8.09 16 19 C 0.10 4.84 1.98 29.85 0.06 4.90 16 20 H 0.02 1.26 6.93 -2.39 -0.02 1.24 16 21 C -0.13 -6.11 8.58 71.98 0.62 -5.50 16 22 C -0.53 -28.45 8.58 25.60 0.22 -28.23 16 23 H 0.06 3.22 7.71 -2.91 -0.02 3.20 16 24 C 0.03 1.44 5.30 84.65 0.45 1.89 16 25 N -0.91 -49.59 11.30 21.45 0.24 -49.35 16 26 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H 0.11 1.26 8.05 -2.91 -0.02 1.24 16 31 H 0.10 1.23 7.95 -2.91 -0.02 1.20 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.06 0.81 8.06 -2.39 -0.02 0.79 16 35 H 0.05 0.67 7.87 -2.38 -0.02 0.65 16 36 H 0.09 1.24 6.41 -2.39 -0.02 1.22 16 37 H 0.04 0.70 8.05 -2.39 -0.02 0.68 16 38 H 0.06 1.63 5.81 -2.38 -0.01 1.62 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 0.87 6.86 -2.38 -0.02 0.85 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.12 2.08 6.20 -2.39 -0.01 2.06 16 43 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 44 H 0.42 11.02 7.72 -92.71 -0.72 10.30 16 45 H 0.15 4.76 5.62 -2.91 -0.02 4.74 16 46 H 0.15 3.22 8.06 -2.92 -0.02 3.19 16 47 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 48 H 0.12 4.85 4.77 -2.91 -0.01 4.83 16 49 H 0.07 3.80 6.01 -2.39 -0.01 3.79 16 50 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.04 1.57 5.90 -2.39 -0.01 1.56 16 52 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -61.33 420.19 2.71 -58.62 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.21 Total: 34.28 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 6.71 Total: -27.89 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -5.07 Total: -83.83 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.04 Total: -16.82 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -1.13 Total: -8.09 kcal Total: -61.33 2.71 -58.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095397345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.061 kcal (2) G-P(sol) polarization free energy of solvation -61.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds