Wall clock time and date at job start Tue Mar 31 2020 06:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48502 * 109.46766 * 239.99563 * 3 2 1 5 5 H 1.48502 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47401 * 119.99774 * 3 2 1 7 7 C 1.39877 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00084 * 190.74505 * 7 2 1 9 9 C 1.41177 * 119.99902 * 10.74573 * 7 2 1 10 10 C 1.40857 * 120.17569 * 29.39632 * 9 7 2 11 11 C 1.36407 * 119.81728 * 180.02562 * 10 9 7 12 12 C 1.39367 * 120.17800 * 0.02562 * 11 10 9 13 13 O 1.35620 * 119.81574 * 179.70127 * 12 11 10 14 14 C 1.35912 * 118.00501 * 77.07019 * 13 12 11 15 15 C 1.38797 * 119.98408 * 0.43283 * 14 13 12 16 16 C 1.38055 * 120.00659 * 179.76875 * 15 14 13 17 17 C 1.38881 * 119.98817 * 0.51054 * 16 15 14 18 18 N 1.40061 * 120.00689 * 179.76471 * 17 16 15 19 19 C 1.34778 * 120.00104 * 214.30854 * 18 17 16 20 20 O 1.21296 * 119.99566 * 4.50460 * 19 18 17 21 21 C 1.50693 * 120.00237 * 184.51345 * 19 18 17 22 22 C 1.50701 * 109.47252 * 179.97438 * 21 19 18 23 23 C 1.41385 * 126.80026 * 124.70727 * 22 21 19 24 24 C 1.35449 * 103.97990 * 179.89026 * 23 22 21 25 25 O 1.34037 * 106.45262 * 0.36556 * 24 23 22 26 26 N 1.20927 * 111.56103 * 359.75370 * 25 24 23 27 27 C 1.38876 * 119.98000 * 359.74708 * 17 16 15 28 28 C 1.38050 * 119.98977 * 0.02562 * 27 17 16 29 29 C 1.39363 * 120.35781 * 359.97438 * 12 11 10 30 30 C 1.36397 * 120.18258 * 0.02562 * 29 12 11 31 31 H 0.97002 * 119.99916 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.08887 * 359.97438 * 10 9 7 33 33 H 1.07997 * 119.91092 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.99563 * 0.02895 * 15 14 13 35 35 H 1.07994 * 120.00398 * 180.25991 * 16 15 14 36 36 H 0.97003 * 119.99867 * 34.30654 * 18 17 16 37 37 H 1.09008 * 109.46824 * 299.99183 * 21 19 18 38 38 H 1.08992 * 109.47529 * 59.99041 * 21 19 18 39 39 H 1.07995 * 128.00752 * 0.02562 * 23 22 21 40 40 H 1.08002 * 126.77136 * 180.09931 * 24 23 22 41 41 H 1.07994 * 120.00081 * 179.97438 * 27 17 16 42 42 H 1.07999 * 119.99675 * 179.97438 * 28 27 17 43 43 H 1.08001 * 119.90437 * 180.02562 * 29 12 11 44 44 H 1.07998 * 120.09433 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6965 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0740 -1.2195 0.1749 9 6 1.3209 -2.4234 -0.2269 10 6 0.1620 -2.4407 -1.0273 11 6 -0.4967 -3.6158 -1.2418 12 6 -0.0262 -4.7969 -0.6710 13 8 -0.6903 -5.9601 -0.8841 14 6 -0.5295 -6.5759 -2.0850 15 6 0.3019 -6.0167 -3.0455 16 6 0.4692 -6.6444 -4.2637 17 6 -0.2028 -7.8298 -4.5319 18 7 -0.0371 -8.4643 -5.7696 19 6 -1.0685 -9.1255 -6.3313 20 8 -2.1616 -9.1027 -5.8061 21 6 -0.8637 -9.8932 -7.6117 22 6 -2.1623 -10.5366 -8.0250 23 6 -2.8229 -10.3896 -9.2663 24 6 -3.9295 -11.1606 -9.1413 25 8 -3.8863 -11.6901 -7.9107 26 7 -2.9008 -11.3332 -7.3077 27 6 -1.0387 -8.3860 -3.5725 28 6 -1.2018 -7.7601 -2.3529 29 6 1.1197 -4.7883 0.1222 30 6 1.7897 -3.6216 0.3463 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2045 -1.5260 -1.4693 33 1 -1.3856 -3.6307 -1.8549 34 1 0.8213 -5.0927 -2.8383 35 1 1.1194 -6.2115 -5.0094 36 1 0.8199 -8.4278 -6.2224 37 1 -0.5302 -9.2118 -8.3945 38 1 -0.1097 -10.6647 -7.4562 39 1 -2.5152 -9.8009 -10.1178 40 1 -4.6976 -11.3145 -9.8848 41 1 -1.5617 -9.3076 -3.7809 42 1 -1.8521 -8.1924 -1.6069 43 1 1.4780 -5.7079 0.5606 44 1 2.6778 -3.6166 0.9609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095405541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:23 Heat of formation + Delta-G solvation = 48.857998 kcal Electronic energy + Delta-G solvation = -29917.849693 eV Core-core repulsion = 25576.196526 eV Total energy + Delta-G solvation = -4341.653167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.22857 -40.60633 -39.67561 -37.81228 -36.60118 -34.94761 -34.43946 -33.51426 -32.06216 -30.79395 -30.35877 -29.76173 -29.35784 -27.95715 -25.24155 -23.51673 -23.18818 -22.59864 -21.72709 -21.23590 -20.78702 -20.11781 -18.27504 -18.01055 -17.82669 -17.48755 -17.40687 -17.03461 -15.94428 -15.72155 -15.42507 -15.18582 -14.65248 -14.34295 -14.17664 -14.04013 -13.79538 -13.56189 -13.43717 -13.17739 -12.94394 -12.83032 -12.62157 -12.35032 -12.23102 -11.89049 -11.74395 -11.58415 -11.50458 -11.23144 -11.03758 -10.66920 -10.57239 -10.55122 -10.08362 -9.94027 -9.92818 -9.80510 -9.37628 -9.31079 -8.72438 -7.77980 -7.51135 -7.28019 -6.89272 -4.54526 1.23407 1.53432 1.64499 1.85090 2.40709 2.48788 2.88277 2.89225 2.98553 3.00036 3.00774 3.02430 3.71128 3.81118 4.07408 4.12944 4.16039 4.47684 4.56478 4.71604 4.80587 4.87932 5.06504 5.11000 5.28045 5.31850 5.48326 5.58690 5.62225 5.66365 5.77069 6.09655 6.11357 6.16662 6.30916 6.50303 6.64093 6.74163 6.76463 6.86950 6.91533 7.10511 7.15833 7.26589 7.39846 7.44021 7.81558 7.84011 7.96467 7.99708 8.03491 8.34182 8.53162 8.69036 8.83970 10.04093 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.001587 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.988695 B =17637.098152 C =18128.448717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.115 3.885 10 C -0.152 4.152 11 C -0.102 4.102 12 C -0.073 4.073 13 O -0.247 6.247 14 C 0.127 3.873 15 C -0.175 4.175 16 C -0.103 4.103 17 C 0.085 3.915 18 N -0.667 5.667 19 C 0.509 3.491 20 O -0.507 6.507 21 C -0.060 4.060 22 C 0.020 3.980 23 C -0.229 4.229 24 C -0.062 4.062 25 O 0.106 5.894 26 N -0.335 5.335 27 C -0.081 4.081 28 C -0.147 4.147 29 C -0.081 4.081 30 C -0.216 4.216 31 H 0.284 0.716 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.407 0.593 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.172 0.828 40 H 0.216 0.784 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -16.240 -19.246 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.112 3.888 10 C -0.172 4.172 11 C -0.121 4.121 12 C -0.115 4.115 13 O -0.158 6.158 14 C 0.082 3.918 15 C -0.194 4.194 16 C -0.123 4.123 17 C -0.008 4.008 18 N -0.313 5.313 19 C 0.295 3.705 20 O -0.380 6.380 21 C -0.100 4.100 22 C -0.139 4.139 23 C -0.250 4.250 24 C -0.143 4.143 25 O 0.036 5.964 26 N -0.035 5.035 27 C -0.101 4.101 28 C -0.166 4.166 29 C -0.100 4.100 30 C -0.236 4.236 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.243 0.757 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.190 0.810 40 H 0.233 0.767 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.994 -16.642 -17.468 24.209 hybrid contribution 0.903 1.484 -1.182 2.101 sum -1.091 -15.158 -18.649 24.058 Atomic orbital electron populations 1.69800 1.07539 1.29679 1.34619 1.25977 0.94907 1.01555 0.92211 0.86246 0.79988 0.79775 0.80059 1.18739 1.20191 1.18848 1.19593 0.96168 0.90483 1.41983 0.90099 1.17744 0.91305 0.92206 0.87548 1.21026 0.98448 0.96354 1.01344 1.20715 0.98725 0.92850 0.99842 1.18175 0.99338 0.82685 1.11298 1.84480 1.65045 1.35917 1.30390 1.19713 0.93469 0.92075 0.86560 1.21294 1.02036 1.02338 0.93725 1.20646 1.01123 0.93058 0.97520 1.17472 1.03233 0.94429 0.85639 1.43314 1.14371 1.53383 1.20254 1.20416 0.84389 0.79657 0.86025 1.90791 1.24268 1.59844 1.63113 1.19958 0.93633 0.99835 0.96595 1.22828 0.98991 0.99966 0.92135 1.22688 0.96865 1.05576 0.99898 1.26016 1.01157 0.98136 0.89030 1.84889 1.34462 1.54525 1.22558 1.73906 0.96292 1.14332 1.19001 1.20779 0.98268 0.99919 0.91162 1.20269 1.03195 0.95324 0.97812 1.20367 0.93157 0.97636 0.98840 1.20650 1.03072 0.93134 1.06703 0.90487 0.85770 0.88669 0.84182 0.85927 0.75732 0.86386 0.86650 0.81049 0.76725 0.84919 0.85295 0.88501 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.72 10.87 55.54 0.60 -19.11 16 2 C 0.07 1.72 5.25 -17.34 -0.09 1.63 16 3 Si 0.92 17.81 29.57 -169.99 -5.03 12.79 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.38 9.04 -37.85 -0.34 -11.72 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.51 16 9 C 0.11 2.92 5.54 -106.80 -0.59 2.32 16 10 C -0.15 -3.81 8.60 -39.25 -0.34 -4.15 16 11 C -0.10 -2.40 8.83 -39.82 -0.35 -2.75 16 12 C -0.07 -1.65 4.44 -38.74 -0.17 -1.83 16 13 O -0.25 -5.36 9.96 -2.79 -0.03 -5.39 16 14 C 0.13 2.43 6.62 -39.17 -0.26 2.17 16 15 C -0.17 -3.11 8.95 -39.44 -0.35 -3.47 16 16 C -0.10 -1.51 9.96 -39.41 -0.39 -1.90 16 17 C 0.08 1.21 6.27 -83.62 -0.52 0.68 16 18 N -0.67 -6.91 5.34 -9.83 -0.05 -6.96 16 19 C 0.51 5.83 7.57 -10.99 -0.08 5.75 16 20 O -0.51 -8.24 13.31 5.54 0.07 -8.16 16 21 C -0.06 -0.42 6.30 -29.04 -0.18 -0.60 16 22 C 0.02 0.20 6.10 -82.10 -0.50 -0.31 16 23 C -0.23 -1.53 11.12 -39.38 -0.44 -1.97 16 24 C -0.06 -0.38 12.30 29.74 0.37 -0.01 16 25 O 0.11 1.06 11.20 17.18 0.19 1.25 16 26 N -0.33 -4.09 11.46 33.42 0.38 -3.71 16 27 C -0.08 -1.30 8.65 -39.41 -0.34 -1.64 16 28 C -0.15 -2.52 9.98 -39.45 -0.39 -2.91 16 29 C -0.08 -1.83 9.92 -39.83 -0.40 -2.22 16 30 C -0.22 -5.08 9.74 -39.26 -0.38 -5.46 16 31 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 32 H 0.12 3.20 6.26 -52.49 -0.33 2.87 16 33 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.14 2.69 6.30 -52.48 -0.33 2.36 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.41 2.55 8.82 -40.82 -0.36 2.19 16 37 H 0.12 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.22 0.30 8.06 -52.49 -0.42 -0.12 16 41 H 0.13 2.14 6.46 -52.49 -0.34 1.80 16 42 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 44 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -32.85 384.91 -8.53 -41.38 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.71 Total: 10.51 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -5.77 Total: -28.40 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.93 Total: -29.78 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.24 Total: -12.30 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.85 -8.53 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.242 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds