Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48502 * 109.46766 * 239.99563 * 3 2 1 5 5 H 1.48502 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47401 * 119.99774 * 3 2 1 7 7 C 1.39877 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00084 * 190.74505 * 7 2 1 9 9 C 1.41177 * 119.99902 * 10.74573 * 7 2 1 10 10 C 1.40857 * 120.17569 * 29.39632 * 9 7 2 11 11 C 1.36407 * 119.81728 * 180.02562 * 10 9 7 12 12 C 1.39367 * 120.17800 * 0.02562 * 11 10 9 13 13 O 1.35620 * 119.81574 * 179.70127 * 12 11 10 14 14 C 1.35912 * 118.00501 * 77.07019 * 13 12 11 15 15 C 1.38797 * 119.98408 * 0.43283 * 14 13 12 16 16 C 1.38055 * 120.00659 * 179.76875 * 15 14 13 17 17 C 1.38881 * 119.98817 * 0.51054 * 16 15 14 18 18 N 1.40061 * 120.00689 * 179.76471 * 17 16 15 19 19 C 1.34778 * 120.00104 * 214.30854 * 18 17 16 20 20 O 1.21296 * 119.99566 * 4.50460 * 19 18 17 21 21 C 1.50693 * 120.00237 * 184.51345 * 19 18 17 22 22 C 1.50701 * 109.47252 * 179.97438 * 21 19 18 23 23 C 1.41385 * 126.80026 * 124.70727 * 22 21 19 24 24 C 1.35449 * 103.97990 * 179.89026 * 23 22 21 25 25 O 1.34037 * 106.45262 * 0.36556 * 24 23 22 26 26 N 1.20927 * 111.56103 * 359.75370 * 25 24 23 27 27 C 1.38876 * 119.98000 * 359.74708 * 17 16 15 28 28 C 1.38050 * 119.98977 * 0.02562 * 27 17 16 29 29 C 1.39363 * 120.35781 * 359.97438 * 12 11 10 30 30 C 1.36397 * 120.18258 * 0.02562 * 29 12 11 31 31 H 0.97002 * 119.99916 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.08887 * 359.97438 * 10 9 7 33 33 H 1.07997 * 119.91092 * 179.97438 * 11 10 9 34 34 H 1.08004 * 119.99563 * 0.02895 * 15 14 13 35 35 H 1.07994 * 120.00398 * 180.25991 * 16 15 14 36 36 H 0.97003 * 119.99867 * 34.30654 * 18 17 16 37 37 H 1.09008 * 109.46824 * 299.99183 * 21 19 18 38 38 H 1.08992 * 109.47529 * 59.99041 * 21 19 18 39 39 H 1.07995 * 128.00752 * 0.02562 * 23 22 21 40 40 H 1.08002 * 126.77136 * 180.09931 * 24 23 22 41 41 H 1.07994 * 120.00081 * 179.97438 * 27 17 16 42 42 H 1.07999 * 119.99675 * 179.97438 * 28 27 17 43 43 H 1.08001 * 119.90437 * 180.02562 * 29 12 11 44 44 H 1.07998 * 120.09433 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6965 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0740 -1.2195 0.1749 9 6 1.3209 -2.4234 -0.2269 10 6 0.1620 -2.4407 -1.0273 11 6 -0.4967 -3.6158 -1.2418 12 6 -0.0262 -4.7969 -0.6710 13 8 -0.6903 -5.9601 -0.8841 14 6 -0.5295 -6.5759 -2.0850 15 6 0.3019 -6.0167 -3.0455 16 6 0.4692 -6.6444 -4.2637 17 6 -0.2028 -7.8298 -4.5319 18 7 -0.0371 -8.4643 -5.7696 19 6 -1.0685 -9.1255 -6.3313 20 8 -2.1616 -9.1027 -5.8061 21 6 -0.8637 -9.8932 -7.6117 22 6 -2.1623 -10.5366 -8.0250 23 6 -2.8229 -10.3896 -9.2663 24 6 -3.9295 -11.1606 -9.1413 25 8 -3.8863 -11.6901 -7.9107 26 7 -2.9008 -11.3332 -7.3077 27 6 -1.0387 -8.3860 -3.5725 28 6 -1.2018 -7.7601 -2.3529 29 6 1.1197 -4.7883 0.1222 30 6 1.7897 -3.6216 0.3463 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2045 -1.5260 -1.4693 33 1 -1.3856 -3.6307 -1.8549 34 1 0.8213 -5.0927 -2.8383 35 1 1.1194 -6.2115 -5.0094 36 1 0.8199 -8.4278 -6.2224 37 1 -0.5302 -9.2118 -8.3945 38 1 -0.1097 -10.6647 -7.4562 39 1 -2.5152 -9.8009 -10.1178 40 1 -4.6976 -11.3145 -9.8848 41 1 -1.5617 -9.3076 -3.7809 42 1 -1.8521 -8.1924 -1.6069 43 1 1.4780 -5.7079 0.5606 44 1 2.6778 -3.6166 0.9609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095405541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = 29.978537 kcal Electronic energy + Delta-G solvation = -29918.668368 eV Core-core repulsion = 25576.196526 eV Total energy + Delta-G solvation = -4342.471842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.83970 -41.80035 -41.06618 -39.28754 -38.18063 -35.69646 -35.54138 -35.22194 -32.61129 -32.15522 -31.59228 -31.41635 -30.90110 -29.12275 -26.99434 -24.52116 -24.04727 -23.76770 -23.08434 -22.92118 -22.04676 -21.16803 -19.44684 -19.33639 -18.97362 -18.65457 -18.33278 -17.98906 -17.38559 -17.06150 -16.60646 -16.36406 -15.96461 -15.83780 -15.35447 -15.28251 -14.90171 -14.57877 -14.49888 -14.39405 -14.16537 -14.07138 -14.01592 -13.64283 -13.58014 -13.38933 -13.28562 -13.14683 -12.79597 -12.57353 -12.28253 -12.19256 -12.07848 -11.69040 -11.44935 -11.27192 -11.08678 -10.92984 -10.77361 -10.49692 -10.03041 -9.63699 -9.27465 -8.72863 -8.65256 -6.43723 0.27268 0.32023 0.63795 0.71010 1.01180 1.28320 1.39764 1.47750 1.52123 1.54583 2.06669 2.18952 2.46664 2.55076 2.77057 2.82590 3.18168 3.59387 3.61430 3.79384 3.90317 3.96198 4.23338 4.26886 4.28358 4.35258 4.40057 4.41478 4.46894 4.55781 4.66325 4.78653 4.88963 4.94410 5.00827 5.05434 5.10435 5.21325 5.26409 5.28030 5.38501 5.45821 5.52127 5.58253 5.90762 5.95815 5.99173 6.16810 6.41589 6.49962 6.74266 6.82864 7.05877 7.12722 7.43433 8.27824 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.001587 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.988695 B =17637.098152 C =18128.448717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.087 3.913 10 C -0.167 4.167 11 C -0.106 4.106 12 C -0.062 4.062 13 O -0.265 6.265 14 C 0.095 3.905 15 C -0.183 4.183 16 C -0.095 4.095 17 C 0.101 3.899 18 N -0.653 5.653 19 C 0.507 3.493 20 O -0.559 6.559 21 C -0.051 4.051 22 C 0.003 3.997 23 C -0.233 4.233 24 C -0.056 4.056 25 O 0.081 5.919 26 N -0.388 5.388 27 C -0.089 4.089 28 C -0.148 4.148 29 C -0.085 4.085 30 C -0.221 4.221 31 H 0.290 0.710 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.159 0.841 36 H 0.431 0.569 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.205 0.795 40 H 0.258 0.742 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -16.671 -22.177 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.513 4.513 8 H 0.104 0.896 9 C 0.084 3.916 10 C -0.187 4.187 11 C -0.125 4.125 12 C -0.104 4.104 13 O -0.177 6.177 14 C 0.051 3.949 15 C -0.203 4.203 16 C -0.115 4.115 17 C 0.007 3.993 18 N -0.301 5.301 19 C 0.295 3.705 20 O -0.436 6.436 21 C -0.091 4.091 22 C -0.156 4.156 23 C -0.254 4.254 24 C -0.137 4.137 25 O 0.014 5.986 26 N -0.093 5.093 27 C -0.109 4.109 28 C -0.168 4.168 29 C -0.103 4.103 30 C -0.240 4.240 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.176 0.824 36 H 0.271 0.729 37 H 0.180 0.820 38 H 0.159 0.841 39 H 0.222 0.778 40 H 0.274 0.726 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.137 0.863 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.601 -17.114 -20.444 26.668 hybrid contribution 0.374 1.390 -0.437 1.505 sum -0.226 -15.723 -20.881 26.140 Atomic orbital electron populations 1.69869 1.09078 1.30927 1.35295 1.26863 0.95603 1.04816 0.91101 0.85139 0.78590 0.75102 0.80252 1.18113 1.19471 1.18215 1.19878 0.96617 0.91300 1.43507 0.89572 1.18068 0.91885 0.93329 0.88275 1.20943 0.99220 0.96277 1.02241 1.20773 0.98831 0.92874 1.00033 1.18227 0.98862 0.83046 1.10291 1.84370 1.65625 1.35554 1.32151 1.19821 0.95732 0.93198 0.86120 1.21258 1.02060 1.02045 0.94899 1.20895 1.01031 0.92638 0.96909 1.17547 1.01222 0.93873 0.86618 1.43262 1.15595 1.52426 1.18770 1.21265 0.83464 0.78834 0.86914 1.90783 1.26490 1.61524 1.64797 1.20141 0.93344 1.00577 0.95051 1.23454 0.99674 0.99421 0.93095 1.23151 0.96504 1.05892 0.99881 1.26922 1.01920 0.96724 0.88104 1.84818 1.34287 1.55320 1.24152 1.73905 0.97744 1.16612 1.21008 1.20848 0.98862 0.99968 0.91218 1.20376 1.02991 0.94822 0.98573 1.20591 0.92917 0.98217 0.98621 1.20848 1.03625 0.92907 1.06629 0.89892 0.87201 0.88275 0.85923 0.82350 0.72913 0.82044 0.84092 0.77819 0.72598 0.85173 0.84812 0.86330 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.19 10.87 21.82 0.24 -41.95 16 2 C 0.03 1.51 5.25 85.23 0.45 1.96 16 3 Si 0.99 36.41 29.57 68.60 2.03 38.44 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.48 -24.82 9.04 23.39 0.21 -24.61 16 8 H 0.09 4.16 7.87 -2.91 -0.02 4.13 16 9 C 0.09 4.55 5.54 -21.28 -0.12 4.43 16 10 C -0.17 -8.72 8.60 22.48 0.19 -8.53 16 11 C -0.11 -5.16 8.83 22.11 0.20 -4.97 16 12 C -0.06 -2.88 4.44 22.81 0.10 -2.78 16 13 O -0.26 -11.74 9.96 -32.89 -0.33 -12.07 16 14 C 0.10 3.70 6.62 22.53 0.15 3.85 16 15 C -0.18 -6.50 8.95 22.36 0.20 -6.30 16 16 C -0.09 -2.58 9.96 22.38 0.22 -2.36 16 17 C 0.10 2.70 6.27 38.13 0.24 2.94 16 18 N -0.65 -11.52 5.34 -303.38 -1.62 -13.14 16 19 C 0.51 10.45 7.57 87.65 0.66 11.12 16 20 O -0.56 -17.86 13.31 -3.08 -0.04 -17.90 16 21 C -0.05 -0.55 6.30 29.10 0.18 -0.37 16 22 C 0.00 0.05 6.10 43.58 0.27 0.31 16 23 C -0.23 -2.44 11.12 22.40 0.25 -2.19 16 24 C -0.06 -0.57 12.30 67.17 0.83 0.26 16 25 O 0.08 1.60 11.20 71.65 0.80 2.40 16 26 N -0.39 -9.40 11.46 -49.55 -0.57 -9.97 16 27 C -0.09 -2.80 8.65 22.38 0.19 -2.61 16 28 C -0.15 -5.16 9.98 22.36 0.22 -4.94 16 29 C -0.08 -3.85 9.92 22.11 0.22 -3.63 16 30 C -0.22 -10.53 9.74 22.48 0.22 -10.31 16 31 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 32 H 0.11 5.95 6.26 -2.91 -0.02 5.93 16 33 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.12 4.79 6.30 -2.91 -0.02 4.78 16 35 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.43 3.53 8.82 -92.71 -0.82 2.72 16 37 H 0.16 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.14 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.26 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.13 4.22 6.46 -2.91 -0.02 4.20 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 44 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -76.61 384.91 5.65 -70.96 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.25 Total: 31.94 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 4.88 Total: -48.72 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.95 Total: -65.06 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.43 Total: -27.57 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -76.61 5.65 -70.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.941 kcal (2) G-P(sol) polarization free energy of solvation -76.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds