Wall clock time and date at job start Tue Mar 31 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48497 * 109.47270 * 274.98018 * 3 2 1 5 5 H 1.48500 * 109.46981 * 34.98350 * 3 2 1 6 6 H 1.48500 * 109.46987 * 154.97839 * 3 2 1 7 7 C 1.38981 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00337 * 185.94053 * 7 2 1 9 9 N 1.37331 * 120.00071 * 5.93988 * 7 2 1 10 10 C 1.36488 * 126.06682 * 174.13659 * 9 7 2 11 11 C 1.35684 * 107.50461 * 180.02562 * 10 9 7 12 12 N 1.40594 * 126.08163 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99943 * 180.02562 * 12 11 10 14 14 O 1.21300 * 119.99870 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99957 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47406 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47406 * 179.97438 * 16 15 13 18 18 C 1.38241 * 119.99046 * 269.72494 * 17 16 15 19 19 C 1.38218 * 120.01044 * 179.76703 * 18 17 16 20 20 C 1.38316 * 119.98767 * 0.50708 * 19 18 17 21 21 Br 1.89105 * 120.01066 * 179.72257 * 20 19 18 22 22 C 1.38325 * 119.98447 * 359.74611 * 20 19 18 23 23 C 1.38221 * 119.98764 * 359.97438 * 22 20 19 24 24 C 1.40650 * 107.83693 * 0.26167 * 11 10 9 25 25 N 1.30916 * 108.38524 * 359.55380 * 24 11 10 26 26 H 0.97000 * 119.99473 * 0.02562 * 1 2 3 27 27 H 1.07998 * 126.24958 * 0.03960 * 10 9 7 28 28 H 0.97004 * 119.99783 * 0.02562 * 12 11 10 29 29 H 1.08996 * 109.47328 * 59.99736 * 15 13 12 30 30 H 1.09004 * 109.47331 * 300.00278 * 15 13 12 31 31 H 1.08996 * 109.47233 * 59.99506 * 16 15 13 32 32 H 1.08999 * 109.46527 * 300.00171 * 16 15 13 33 33 H 1.08002 * 119.98976 * 0.02562 * 18 17 16 34 34 H 1.07998 * 120.00234 * 180.22944 * 19 18 17 35 35 H 1.08003 * 120.00722 * 179.97438 * 22 20 19 36 36 H 1.07996 * 119.99361 * 179.97438 * 23 22 20 37 37 H 1.07993 * 125.80695 * 179.70184 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.3893 2.1073 -1.3947 5 1 1.5010 2.6200 0.8027 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2062 0.0963 9 7 1.3268 -2.3897 -0.1241 10 6 1.8863 -3.6280 -0.2520 11 6 0.8734 -4.5258 -0.3466 12 7 1.0111 -5.9174 -0.4915 13 6 -0.0844 -6.6980 -0.5745 14 8 -1.1893 -6.1998 -0.5247 15 6 0.0632 -8.1898 -0.7292 16 6 -1.3223 -8.8349 -0.7993 17 6 -1.1747 -10.3266 -0.9546 18 6 -1.1103 -10.8869 -2.2168 19 6 -0.9700 -12.2545 -2.3597 20 6 -0.9046 -13.0635 -1.2397 21 35 -0.7206 -14.9355 -1.4346 22 6 -0.9743 -12.5030 0.0230 23 6 -1.1088 -11.1347 0.1650 24 6 -0.3390 -3.8158 -0.2806 25 7 -0.0653 -2.5432 -0.1419 26 1 -0.4849 0.8401 -0.0004 27 1 2.9425 -3.8524 -0.2737 28 1 1.8947 -6.3157 -0.5317 29 1 0.6087 -8.5914 0.1247 30 1 0.6118 -8.4075 -1.6456 31 1 -1.8674 -8.4332 -1.6534 32 1 -1.8712 -8.6172 0.1169 33 1 -1.1654 -10.2554 -3.0912 34 1 -0.9160 -12.6917 -3.3458 35 1 -0.9237 -13.1345 0.8977 36 1 -1.1636 -10.6971 1.1508 37 1 -1.3276 -4.2474 -0.3329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095407179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:32 Heat of formation + Delta-G solvation = 65.026350 kcal Electronic energy + Delta-G solvation = -22149.476983 eV Core-core repulsion = 18553.549961 eV Total energy + Delta-G solvation = -3595.927023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05739 -39.64621 -38.55780 -34.58141 -34.09710 -33.14393 -31.64196 -31.39224 -30.25295 -29.16513 -27.62309 -25.19027 -24.14458 -23.16033 -21.42039 -20.88789 -20.02677 -19.39662 -17.59705 -16.96483 -16.35454 -16.06493 -15.49587 -15.36420 -15.14071 -15.03169 -14.19892 -13.86928 -13.73633 -13.54246 -13.47388 -13.05522 -12.78969 -12.77160 -12.27743 -11.71375 -11.69651 -11.42050 -11.33925 -11.27714 -11.02749 -10.99943 -10.93249 -10.62613 -10.53152 -10.14356 -9.36307 -9.22882 -9.16201 -8.85245 -8.78349 -8.05690 -6.69718 -6.56476 -4.23165 0.74266 0.97411 1.29402 2.83424 3.03523 3.04879 3.10011 3.24368 3.63009 3.68031 3.88595 4.41016 4.43299 4.52761 4.57082 4.80843 4.92373 4.95353 5.00907 5.03833 5.16009 5.25197 5.40013 5.57275 5.57512 5.77504 5.86458 5.91526 6.05642 6.24235 6.30906 6.46803 6.49524 6.91276 6.96247 7.13055 7.24776 7.86204 8.18564 8.29572 8.63736 8.86977 9.38157 9.67229 10.39875 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.055414 B = 0.001379 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.170197 B =20292.735900 C =20482.819826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.325 4.325 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.626 5.626 13 C 0.496 3.504 14 O -0.538 6.538 15 C -0.129 4.129 16 C -0.069 4.069 17 C -0.060 4.060 18 C -0.111 4.111 19 C -0.089 4.089 20 C -0.098 4.098 21 Br -0.059 7.059 22 C -0.089 4.089 23 C -0.111 4.111 24 C -0.033 4.033 25 N -0.262 5.262 26 H 0.275 0.725 27 H 0.145 0.855 28 H 0.397 0.603 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 -27.628 -2.842 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.235 4.235 11 C -0.166 4.166 12 N -0.268 5.268 13 C 0.282 3.718 14 O -0.415 6.415 15 C -0.169 4.169 16 C -0.106 4.106 17 C -0.060 4.060 18 C -0.129 4.129 19 C -0.109 4.109 20 C -0.177 4.177 21 Br 0.026 6.974 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.209 4.209 25 N -0.093 5.093 26 H 0.085 0.915 27 H 0.162 0.838 28 H 0.229 0.771 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.392 -26.639 -2.742 26.783 hybrid contribution 1.347 -0.027 -0.080 1.350 sum 0.955 -26.667 -2.822 26.833 Atomic orbital electron populations 1.70229 1.06151 1.27954 1.35316 1.25642 0.95685 1.00262 0.95476 0.85819 0.79449 0.80072 0.78849 1.19647 1.20100 1.18794 1.19873 0.92134 0.80727 1.52941 0.86635 1.44545 1.03992 1.03721 1.38862 1.21273 0.96821 0.85850 1.19528 1.17304 0.94266 0.81893 1.23167 1.42560 1.08323 1.05251 1.70680 1.20374 0.84543 0.88487 0.78347 1.90601 1.25584 1.75079 1.50255 1.21564 0.98803 0.92404 1.04173 1.20397 0.96544 0.88637 1.05063 1.20169 0.96487 0.96310 0.93030 1.21153 1.00018 0.94228 0.97548 1.21110 0.98604 0.93509 0.97675 1.21771 1.09237 0.90272 0.96408 1.96715 1.96901 1.05432 1.98312 1.21115 0.98609 0.95448 0.95729 1.21152 1.00028 0.92638 0.99129 1.24108 0.98006 0.90914 1.07866 1.78246 0.90321 1.15186 1.25531 0.91485 0.83752 0.77050 0.89115 0.89122 0.89629 0.89621 0.84877 0.85084 0.85083 0.84877 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.55 11.84 55.49 0.66 -20.89 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 18.89 29.56 -169.99 -5.02 13.87 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.32 -8.59 10.24 -14.81 -0.15 -8.74 16 8 H 0.12 2.73 7.84 -52.49 -0.41 2.32 16 9 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 10 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 N -0.63 -10.63 5.47 -10.00 -0.05 -10.68 16 13 C 0.50 8.00 7.80 -10.99 -0.09 7.91 16 14 O -0.54 -10.90 13.13 5.54 0.07 -10.82 16 15 C -0.13 -1.34 5.68 -27.88 -0.16 -1.50 16 16 C -0.07 -0.70 4.63 -27.88 -0.13 -0.83 16 17 C -0.06 -0.53 5.13 -104.62 -0.54 -1.06 16 18 C -0.11 -0.92 9.70 -39.59 -0.38 -1.30 16 19 C -0.09 -0.73 9.79 -39.56 -0.39 -1.11 16 20 C -0.10 -0.84 6.22 -39.52 -0.25 -1.08 16 21 Br -0.06 -0.47 33.70 -68.01 -2.29 -2.76 16 22 C -0.09 -0.73 9.79 -39.56 -0.39 -1.11 16 23 C -0.11 -0.91 9.70 -39.59 -0.38 -1.30 16 24 C -0.03 -0.88 10.85 -17.03 -0.18 -1.06 16 25 N -0.26 -7.62 10.42 30.80 0.32 -7.30 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 27 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 28 H 0.40 5.09 8.83 -40.82 -0.36 4.73 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 32 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -33.33 346.15 -9.06 -42.39 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.01 Total: 9.16 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -3.90 Total: -14.20 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.88 Total: -42.86 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.33 -9.06 -42.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095407179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.418 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds