Wall clock time and date at job start Tue Mar 31 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48497 * 109.47270 * 274.98018 * 3 2 1 5 5 H 1.48500 * 109.46981 * 34.98350 * 3 2 1 6 6 H 1.48500 * 109.46987 * 154.97839 * 3 2 1 7 7 C 1.38981 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00337 * 185.94053 * 7 2 1 9 9 N 1.37331 * 120.00071 * 5.93988 * 7 2 1 10 10 C 1.36488 * 126.06682 * 174.13659 * 9 7 2 11 11 C 1.35684 * 107.50461 * 180.02562 * 10 9 7 12 12 N 1.40594 * 126.08163 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99943 * 180.02562 * 12 11 10 14 14 O 1.21300 * 119.99870 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99957 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47406 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47406 * 179.97438 * 16 15 13 18 18 C 1.38241 * 119.99046 * 269.72494 * 17 16 15 19 19 C 1.38218 * 120.01044 * 179.76703 * 18 17 16 20 20 C 1.38316 * 119.98767 * 0.50708 * 19 18 17 21 21 Br 1.89105 * 120.01066 * 179.72257 * 20 19 18 22 22 C 1.38325 * 119.98447 * 359.74611 * 20 19 18 23 23 C 1.38221 * 119.98764 * 359.97438 * 22 20 19 24 24 C 1.40650 * 107.83693 * 0.26167 * 11 10 9 25 25 N 1.30916 * 108.38524 * 359.55380 * 24 11 10 26 26 H 0.97000 * 119.99473 * 0.02562 * 1 2 3 27 27 H 1.07998 * 126.24958 * 0.03960 * 10 9 7 28 28 H 0.97004 * 119.99783 * 0.02562 * 12 11 10 29 29 H 1.08996 * 109.47328 * 59.99736 * 15 13 12 30 30 H 1.09004 * 109.47331 * 300.00278 * 15 13 12 31 31 H 1.08996 * 109.47233 * 59.99506 * 16 15 13 32 32 H 1.08999 * 109.46527 * 300.00171 * 16 15 13 33 33 H 1.08002 * 119.98976 * 0.02562 * 18 17 16 34 34 H 1.07998 * 120.00234 * 180.22944 * 19 18 17 35 35 H 1.08003 * 120.00722 * 179.97438 * 22 20 19 36 36 H 1.07996 * 119.99361 * 179.97438 * 23 22 20 37 37 H 1.07993 * 125.80695 * 179.70184 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.3893 2.1073 -1.3947 5 1 1.5010 2.6200 0.8027 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2062 0.0963 9 7 1.3268 -2.3897 -0.1241 10 6 1.8863 -3.6280 -0.2520 11 6 0.8734 -4.5258 -0.3466 12 7 1.0111 -5.9174 -0.4915 13 6 -0.0844 -6.6980 -0.5745 14 8 -1.1893 -6.1998 -0.5247 15 6 0.0632 -8.1898 -0.7292 16 6 -1.3223 -8.8349 -0.7993 17 6 -1.1747 -10.3266 -0.9546 18 6 -1.1103 -10.8869 -2.2168 19 6 -0.9700 -12.2545 -2.3597 20 6 -0.9046 -13.0635 -1.2397 21 35 -0.7206 -14.9355 -1.4346 22 6 -0.9743 -12.5030 0.0230 23 6 -1.1088 -11.1347 0.1650 24 6 -0.3390 -3.8158 -0.2806 25 7 -0.0653 -2.5432 -0.1419 26 1 -0.4849 0.8401 -0.0004 27 1 2.9425 -3.8524 -0.2737 28 1 1.8947 -6.3157 -0.5317 29 1 0.6087 -8.5914 0.1247 30 1 0.6118 -8.4075 -1.6456 31 1 -1.8674 -8.4332 -1.6534 32 1 -1.8712 -8.6172 0.1169 33 1 -1.1654 -10.2554 -3.0912 34 1 -0.9160 -12.6917 -3.3458 35 1 -0.9237 -13.1345 0.8977 36 1 -1.1636 -10.6971 1.1508 37 1 -1.3276 -4.2474 -0.3329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095407179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:31 Heat of formation + Delta-G solvation = 45.074941 kcal Electronic energy + Delta-G solvation = -22150.342141 eV Core-core repulsion = 18553.549961 eV Total energy + Delta-G solvation = -3596.792181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68059 -40.58272 -39.93826 -35.95042 -35.20449 -34.91460 -32.47056 -32.12191 -31.99352 -30.21297 -29.14588 -26.87606 -25.29194 -23.76522 -22.86594 -22.17383 -21.35255 -21.10051 -19.31017 -17.97640 -17.48401 -17.29232 -16.88158 -16.80686 -16.09264 -15.98304 -15.74472 -15.21678 -14.97387 -14.77318 -14.45237 -14.28898 -13.95480 -13.79806 -13.46482 -13.29635 -13.08044 -12.94222 -12.78612 -12.36180 -12.07093 -12.03447 -11.80522 -11.78702 -11.64635 -11.23830 -10.99518 -10.80854 -10.60657 -10.08212 -9.96737 -9.51317 -8.49415 -8.46227 -6.23087 0.09648 0.36916 0.67452 1.24667 1.40289 1.57358 1.58497 1.90440 2.08115 2.35628 2.56773 2.66554 2.96438 3.09059 3.73781 3.81503 3.99724 4.03992 4.19489 4.34021 4.43764 4.47529 4.49077 4.63079 4.70888 4.78569 4.92306 5.02467 5.09184 5.12966 5.24372 5.26028 5.27921 5.32009 5.54757 5.64139 5.87649 5.97987 6.35108 6.76023 6.83722 7.46062 7.51669 7.71413 8.53282 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.055414 B = 0.001379 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.170197 B =20292.735900 C =20482.819826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.242 1.242 7 C -0.356 4.356 8 H 0.140 0.860 9 N -0.170 5.170 10 C -0.081 4.081 11 C -0.044 4.044 12 N -0.620 5.620 13 C 0.494 3.506 14 O -0.582 6.582 15 C -0.113 4.113 16 C -0.063 4.063 17 C -0.064 4.064 18 C -0.113 4.113 19 C -0.094 4.094 20 C -0.107 4.107 21 Br -0.057 7.057 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.061 4.061 25 N -0.313 5.313 26 H 0.276 0.724 27 H 0.188 0.812 28 H 0.420 0.580 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -29.169 -3.042 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.487 4.487 8 H 0.158 0.842 9 N 0.060 4.940 10 C -0.231 4.231 11 C -0.150 4.150 12 N -0.265 5.265 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.152 4.152 16 C -0.101 4.101 17 C -0.065 4.065 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.186 4.186 21 Br 0.028 6.972 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.236 4.236 25 N -0.145 5.145 26 H 0.085 0.915 27 H 0.205 0.795 28 H 0.258 0.742 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.091 -28.250 -2.944 28.480 hybrid contribution 0.542 0.230 -0.032 0.589 sum 2.632 -28.020 -2.976 28.300 Atomic orbital electron populations 1.70410 1.08461 1.29036 1.37501 1.26882 0.96448 1.04347 0.94160 0.84583 0.78545 0.74200 0.78903 1.19207 1.20190 1.16513 1.20611 0.93398 0.81100 1.53555 0.84219 1.44833 1.03558 1.05252 1.40326 1.22031 0.98852 0.84644 1.17621 1.17395 0.92612 0.84616 1.20403 1.42574 1.10201 1.02856 1.70867 1.21500 0.83395 0.90680 0.76108 1.90595 1.27465 1.76410 1.51686 1.21571 0.99615 0.87322 1.06741 1.20280 0.96214 0.89677 1.03960 1.20032 0.97555 0.95297 0.93601 1.21308 0.99616 0.94500 0.97770 1.21292 0.98348 0.93496 0.98238 1.21953 1.09305 0.90556 0.96827 1.96718 1.96886 1.05243 1.98315 1.21297 0.98349 0.95612 0.96118 1.21307 0.99617 0.92712 0.99546 1.24175 0.99090 0.91090 1.09259 1.78134 0.92287 1.16809 1.27305 0.91453 0.79542 0.74242 0.86270 0.86290 0.90874 0.90858 0.83751 0.83871 0.83864 0.83738 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.02 11.84 21.66 0.26 -47.76 16 2 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 3 Si 1.02 38.64 29.56 68.60 2.03 40.67 16 4 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 7 C -0.36 -18.87 10.24 84.01 0.86 -18.01 16 8 H 0.14 6.41 7.84 -2.91 -0.02 6.38 16 9 N -0.17 -9.47 3.74 -190.01 -0.71 -10.18 16 10 C -0.08 -3.71 11.49 83.38 0.96 -2.75 16 11 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 12 N -0.62 -19.79 5.47 -303.93 -1.66 -21.45 16 13 C 0.49 15.22 7.80 87.66 0.68 15.90 16 14 O -0.58 -23.84 13.13 -3.09 -0.04 -23.88 16 15 C -0.11 -2.01 5.68 29.85 0.17 -1.84 16 16 C -0.06 -1.19 4.63 29.85 0.14 -1.05 16 17 C -0.06 -1.01 5.13 -19.86 -0.10 -1.11 16 18 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 19 C -0.09 -1.34 9.79 22.28 0.22 -1.12 16 20 C -0.11 -1.63 6.22 22.31 0.14 -1.49 16 21 Br -0.06 -0.82 33.70 -20.37 -0.69 -1.51 16 22 C -0.09 -1.34 9.79 22.29 0.22 -1.12 16 23 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 24 C -0.06 -3.30 10.85 85.42 0.93 -2.38 16 25 N -0.31 -18.99 10.42 -56.47 -0.59 -19.58 16 26 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.19 6.65 8.06 -2.91 -0.02 6.62 16 28 H 0.42 9.31 8.83 -92.71 -0.82 8.49 16 29 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 32 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 33 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.17 9.13 5.92 -2.91 -0.02 9.12 16 Total: -1.00 -76.53 346.15 4.26 -72.26 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.30 Total: 30.85 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 5.37 Total: -19.42 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -2.70 Total: -98.97 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -0.69 Total: -1.51 kcal Total: -76.53 4.26 -72.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095407179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.336 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds