Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35975 * 116.99360 * 2 1 4 4 C 1.38722 * 119.98507 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.03547 * 180.02562 * 4 3 2 6 6 C 1.38810 * 119.99783 * 359.97438 * 5 4 3 7 7 N 1.40217 * 120.01647 * 180.27296 * 6 5 4 8 8 C 1.34766 * 119.99964 * 24.78548 * 7 6 5 9 9 O 1.21596 * 120.00541 * 5.62322 * 8 7 6 10 10 N 1.34775 * 119.99924 * 185.61978 * 8 7 6 11 11 C 1.46506 * 120.00319 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47168 * 89.99928 * 11 10 8 13 13 H 1.08001 * 120.00293 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00068 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99828 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46775 * 90.00004 * 16 14 12 18 18 H 1.48494 * 109.47358 * 209.99987 * 16 14 12 19 19 H 1.48498 * 109.47308 * 330.00143 * 16 14 12 20 20 C 1.46506 * 120.00046 * 359.97438 * 10 8 7 21 21 C 1.50703 * 109.46941 * 90.00063 * 20 10 8 22 22 C 1.34516 * 125.79115 * 89.71332 * 21 20 10 23 23 C 1.41387 * 106.83940 * 179.88806 * 22 21 20 24 24 C 1.34510 * 106.84076 * 0.37976 * 23 22 21 25 25 O 1.34302 * 125.78774 * 270.02667 * 21 20 10 26 26 C 1.38920 * 119.96422 * 359.97438 * 6 5 4 27 27 Cl 1.73595 * 120.01901 * 180.02562 * 26 6 5 28 28 C 1.38201 * 119.96305 * 0.02562 * 26 6 5 29 29 H 1.09011 * 109.46854 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47553 * 299.99827 * 1 2 3 31 31 H 1.08999 * 109.47027 * 60.00602 * 1 2 3 32 32 H 1.07995 * 119.98535 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.00306 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99612 * 204.77994 * 7 6 5 35 35 H 1.08998 * 109.47243 * 210.00093 * 11 10 8 36 36 H 1.08999 * 109.46810 * 330.00170 * 11 10 8 37 37 H 0.96995 * 120.00174 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47100 * 209.99606 * 20 10 8 39 39 H 1.08999 * 109.47138 * 330.00135 * 20 10 8 40 40 H 1.07999 * 126.58003 * 0.03053 * 22 21 20 41 41 H 1.07997 * 126.57677 * 180.16414 * 23 22 21 42 42 H 1.07995 * 125.78923 * 179.74997 * 24 23 22 43 43 H 1.07999 * 119.99971 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2902 2.3748 0.0005 5 6 1.9160 3.6059 0.0000 6 6 3.3021 3.6799 -0.0005 7 7 3.9378 4.9296 0.0047 8 6 3.2992 6.0084 0.4993 9 8 2.2144 5.8810 1.0335 10 7 3.8631 7.2287 0.4018 11 6 3.1691 8.4014 0.9399 12 6 3.5717 8.6076 2.3774 13 1 4.2745 7.9329 2.8435 14 6 3.0429 9.6577 3.0977 15 7 2.1866 10.4790 2.5303 16 14 3.5414 9.9128 4.8797 17 1 4.7327 10.7974 4.9386 18 1 2.4201 10.5426 5.6221 19 1 3.8677 8.6014 5.4951 20 6 5.1704 7.3823 -0.2412 21 6 4.9791 7.6304 -1.7153 22 6 4.8387 8.8343 -2.2988 23 6 4.6886 8.6025 -3.6854 24 6 4.7378 7.2704 -3.8653 25 8 4.9139 6.6867 -2.6686 26 6 4.0591 2.5150 0.0000 27 17 5.7927 2.6059 0.0000 28 6 3.4313 1.2839 0.0005 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2118 2.3176 0.0014 33 1 1.3269 4.5111 0.0008 34 1 4.8373 5.0176 -0.3476 35 1 3.4387 9.2822 0.3572 36 1 2.0921 8.2439 0.8833 37 1 1.8148 11.2180 3.0368 38 1 5.6973 8.2263 0.2038 39 1 5.7546 6.4732 -0.0986 40 1 4.8425 9.7940 -1.8034 41 1 4.5561 9.3511 -4.4524 42 1 4.6502 6.7572 -4.8116 43 1 4.0192 0.3779 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095413660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -10.383381 kcal Electronic energy + Delta-G solvation = -30331.547001 eV Core-core repulsion = 25984.892085 eV Total energy + Delta-G solvation = -4346.654916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37342 -40.60577 -39.58006 -37.71019 -36.36802 -35.35724 -34.20822 -32.84160 -32.61323 -30.95884 -30.23369 -29.20599 -27.57559 -26.84230 -25.48908 -23.54495 -22.83690 -21.74346 -21.53447 -20.60714 -19.48145 -18.46308 -17.99611 -17.47736 -16.94886 -16.37025 -16.14342 -15.84752 -15.72339 -15.13691 -15.04443 -14.85895 -14.27985 -14.19393 -14.11009 -13.74653 -13.40333 -13.14299 -12.81555 -12.73004 -12.65138 -12.54280 -12.28097 -12.20904 -11.92779 -11.65360 -11.37209 -11.28509 -11.16704 -10.97365 -10.91241 -10.64546 -10.21512 -9.92223 -9.74363 -9.68691 -9.37289 -8.85180 -8.48212 -8.36860 -7.99512 -7.51471 -6.09120 -4.14119 1.10165 1.37267 1.84450 1.98251 2.75347 3.06861 3.10250 3.28134 3.29216 3.35514 3.40383 3.49858 3.91073 4.27300 4.43773 4.75431 4.85599 4.91323 4.92407 5.00972 5.05424 5.17860 5.21769 5.25580 5.30291 5.40414 5.41052 5.66206 5.75907 5.84782 5.96377 6.13511 6.15310 6.24237 6.28814 6.43837 6.63221 6.68199 6.88465 7.23542 7.28617 7.29392 7.39236 7.55871 7.87695 8.15468 8.37555 8.85702 9.06525 9.51415 10.98822 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.007667 B = 0.003568 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.226445 B = 7845.461156 C = 9789.419122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.105 3.895 4 C -0.176 4.176 5 C -0.082 4.082 6 C 0.166 3.834 7 N -0.686 5.686 8 C 0.704 3.296 9 O -0.560 6.560 10 N -0.599 5.599 11 C 0.261 3.739 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.191 3.809 21 C -0.033 4.033 22 C -0.188 4.188 23 C -0.214 4.214 24 C -0.047 4.047 25 O -0.176 6.176 26 C -0.042 4.042 27 Cl -0.063 7.063 28 C -0.122 4.122 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.405 0.595 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.198 0.802 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -14.838 -11.798 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.059 3.941 4 C -0.195 4.195 5 C -0.103 4.103 6 C 0.068 3.932 7 N -0.335 5.335 8 C 0.406 3.594 9 O -0.436 6.436 10 N -0.333 5.333 11 C 0.143 3.857 12 C -0.569 4.569 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.066 3.934 21 C -0.084 4.084 22 C -0.208 4.208 23 C -0.233 4.233 24 C -0.115 4.115 25 O -0.072 6.072 26 C -0.072 4.072 27 Cl -0.035 7.035 28 C -0.142 4.142 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.243 0.757 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.214 0.786 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.920 -15.096 -11.274 19.066 hybrid contribution 0.597 0.727 0.603 1.117 sum 3.517 -14.369 -10.672 18.240 Atomic orbital electron populations 1.23053 0.78364 1.03758 1.01593 1.86037 1.21317 1.26541 1.89273 1.18650 0.91477 0.84380 0.99557 1.21266 1.00420 0.91528 1.06290 1.21356 0.92343 0.99202 0.97375 1.17227 0.91590 0.83318 1.01070 1.42999 1.19593 1.05945 1.64940 1.15872 0.84176 0.80279 0.79090 1.90857 1.20733 1.83874 1.48168 1.47709 1.19656 1.07292 1.58646 1.19316 0.93528 0.79573 0.93323 1.21439 1.26772 1.12098 0.96589 0.92275 1.24906 0.94788 0.95695 0.98478 1.69928 1.29814 1.16349 1.37078 0.86498 0.78054 0.78324 0.84573 1.20616 1.21100 1.19860 1.19840 0.87012 1.04134 0.82434 1.23251 1.06398 0.87174 0.91595 1.21693 1.06561 0.98760 0.93834 1.21827 1.08365 0.96147 0.96969 1.23939 1.06582 0.93149 0.87785 1.84003 1.70439 1.37226 1.15546 1.20188 0.84279 0.93014 1.09756 1.98352 1.09543 1.98453 1.97110 1.19832 0.91661 0.96397 1.06277 0.88363 0.92483 0.92605 0.84743 0.81968 0.75747 0.94484 0.93502 0.92656 0.85967 0.90642 0.83134 0.83716 0.78559 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.66 10.50 -19.66 -0.21 -3.87 16 3 C 0.11 1.36 6.69 -39.23 -0.26 1.10 16 4 C -0.18 -2.35 9.03 -39.45 -0.36 -2.70 16 5 C -0.08 -1.33 8.71 -39.42 -0.34 -1.67 16 6 C 0.17 2.70 6.43 -83.56 -0.54 2.16 16 7 N -0.69 -11.72 5.08 -14.16 -0.07 -11.79 16 8 C 0.70 14.75 8.08 -86.93 -0.70 14.04 16 9 O -0.56 -13.65 13.09 5.28 0.07 -13.58 16 10 N -0.60 -12.32 2.44 -182.18 -0.44 -12.76 16 11 C 0.26 6.51 5.16 -5.19 -0.03 6.49 16 12 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.19 3.06 5.75 -5.19 -0.03 3.03 16 21 C -0.03 -0.51 6.90 -35.62 -0.25 -0.75 16 22 C -0.19 -2.85 10.81 -39.70 -0.43 -3.28 16 23 C -0.21 -2.78 10.91 -39.70 -0.43 -3.21 16 24 C -0.05 -0.57 12.09 29.41 0.36 -0.22 16 25 O -0.18 -2.59 10.65 5.70 0.06 -2.52 16 26 C -0.04 -0.60 6.33 -39.34 -0.25 -0.85 16 27 Cl -0.06 -0.80 27.78 -51.86 -1.44 -2.24 16 28 C -0.12 -1.58 9.76 -39.42 -0.38 -1.96 16 29 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 33 H 0.16 2.99 5.79 -52.49 -0.30 2.68 16 34 H 0.40 6.12 5.45 -40.82 -0.22 5.90 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.12 1.87 8.07 -51.93 -0.42 1.45 16 39 H 0.08 1.03 6.29 -51.93 -0.33 0.71 16 40 H 0.15 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.20 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -32.62 384.18 -8.46 -41.09 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.86 Total: 8.17 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.07 Total: 0.31 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.22 Total: -49.52 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.08 Total: -19.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.44 Total: -2.24 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.62 -8.46 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095413660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.702 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds