Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 C 1.53004 * 109.46912 * 240.00089 * 2 1 3 5 5 C 1.50696 * 109.46901 * 59.99944 * 4 2 1 6 6 H 1.08000 * 120.00126 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99882 * 179.97438 * 5 4 2 8 8 N 1.31505 * 119.99849 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46862 * 90.00422 * 9 7 5 11 11 H 1.48506 * 109.46803 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47390 * 330.00053 * 9 7 5 13 13 C 1.52999 * 109.47368 * 120.00118 * 2 1 3 14 14 N 1.46499 * 109.47329 * 300.00312 * 13 2 1 15 15 C 1.39676 * 120.00261 * 180.02562 * 14 13 2 16 16 C 1.38926 * 120.07182 * 359.97438 * 15 14 13 17 17 C 1.38089 * 119.92422 * 179.97438 * 16 15 14 18 18 C 1.38301 * 120.07155 * 0.28052 * 17 16 15 19 19 C 1.38266 * 120.15343 * 359.44513 * 18 17 16 20 20 C 1.50699 * 119.96646 * 180.27620 * 19 18 17 21 21 S 1.81408 * 109.47181 * 270.27566 * 20 19 18 22 22 C 1.81395 * 102.99939 * 180.02562 * 21 20 19 23 23 C 1.53178 * 109.54235 * 294.55345 * 22 21 20 24 24 C 1.53098 * 109.16359 * 183.15296 * 23 22 21 25 25 O 1.42897 * 109.41202 * 57.60970 * 24 23 22 26 26 C 1.42906 * 114.09970 * 298.84292 * 25 24 23 27 27 C 1.53087 * 109.41364 * 61.16119 * 26 25 24 28 28 C 1.38134 * 120.07086 * 0.55323 * 19 18 17 29 29 H 1.09001 * 109.46832 * 299.99629 * 1 2 3 30 30 H 1.08994 * 109.47300 * 59.99641 * 1 2 3 31 31 H 1.09000 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47395 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46824 * 300.00645 * 3 2 1 34 34 H 1.09001 * 109.46464 * 60.00146 * 3 2 1 35 35 H 1.09001 * 109.46765 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47345 * 299.99800 * 4 2 1 37 37 H 0.97002 * 120.00151 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47435 * 179.97438 * 13 2 1 39 39 H 1.09000 * 109.47074 * 60.00087 * 13 2 1 40 40 H 0.97003 * 119.99498 * 359.97438 * 14 13 2 41 41 H 1.07999 * 120.03920 * 0.02562 * 16 15 14 42 42 H 1.08002 * 119.96096 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.92197 * 179.69817 * 18 17 16 44 44 H 1.09002 * 109.46951 * 30.27333 * 20 19 18 45 45 H 1.09000 * 109.47036 * 150.27813 * 20 19 18 46 46 H 1.08997 * 109.54244 * 54.81884 * 22 21 20 47 47 H 1.09000 * 109.52798 * 303.05943 * 23 22 21 48 48 H 1.09006 * 109.52114 * 63.24840 * 23 22 21 49 49 H 1.08998 * 109.47828 * 297.63081 * 24 23 22 50 50 H 1.08998 * 109.48092 * 177.59267 * 24 23 22 51 51 H 1.09002 * 109.47908 * 301.17324 * 26 25 24 52 52 H 1.09002 * 109.49163 * 181.14894 * 26 25 24 53 53 H 1.08998 * 109.52140 * 182.48965 * 27 26 25 54 54 H 1.09001 * 109.52538 * 62.29732 * 27 26 25 55 55 H 1.07998 * 120.03610 * 179.74416 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3805 7 6 1.8711 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8527 9 14 1.2477 0.3987 -5.2571 10 1 2.2252 1.4411 -5.6612 11 1 1.0834 -0.5805 -6.3614 12 1 -0.0609 1.0352 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8897 -0.5077 3.7140 16 6 2.6884 -1.6370 3.8432 17 6 3.0210 -2.1056 5.0988 18 6 2.5552 -1.4552 6.2270 19 6 1.7648 -0.3277 6.1021 20 6 1.2647 0.3813 7.3343 21 16 -0.3325 -0.3217 7.8301 22 6 -0.7640 0.6448 9.3032 23 6 0.2434 0.3543 10.4199 24 6 -0.1734 1.1129 11.6827 25 8 -1.4974 0.7247 12.0546 26 6 -2.4896 1.0153 11.0680 27 6 -2.1658 0.2528 9.7807 28 6 1.4283 0.1464 4.8490 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.1300 -0.7208 -1.2495 36 1 1.6767 -1.7489 -1.2493 37 1 2.8614 -1.8822 -4.7337 38 1 3.1301 -0.7217 1.2490 39 1 1.6768 -1.7489 1.2492 40 1 0.9943 0.7581 2.3564 41 1 3.0494 -2.1475 2.9625 42 1 3.6415 -2.9837 5.1999 43 1 2.8128 -1.8266 7.2079 44 1 1.9841 0.2549 8.1433 45 1 1.1431 1.4428 7.1185 46 1 -0.7452 1.7072 9.0606 47 1 0.2598 -0.7158 10.6265 48 1 1.2358 0.6815 10.1093 49 1 -0.1505 2.1849 11.4869 50 1 0.5160 0.8763 12.4931 51 1 -2.4969 2.0861 10.8644 52 1 -3.4688 0.7086 11.4356 53 1 -2.8964 0.5074 9.0130 54 1 -2.1981 -0.8194 9.9744 55 1 0.8074 1.0247 4.7521 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095429211.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = -64.551980 kcal Electronic energy + Delta-G solvation = -29311.190207 eV Core-core repulsion = 25437.155266 eV Total energy + Delta-G solvation = -3874.034941 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.197 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.58276 -40.16128 -38.96731 -35.88330 -34.75151 -34.31551 -33.23754 -32.11601 -30.57818 -28.90602 -27.99015 -27.97087 -27.08163 -26.07651 -24.76178 -24.50585 -23.31382 -21.74410 -21.26054 -19.74864 -18.37690 -18.25117 -17.58564 -17.12160 -16.99344 -16.71541 -16.59201 -16.31207 -15.98736 -15.79952 -15.59987 -15.29667 -15.19044 -14.91172 -14.57095 -14.39221 -14.38038 -14.27416 -13.96863 -13.79548 -13.64450 -13.33577 -13.25178 -12.89692 -12.76109 -12.71514 -12.56152 -12.35816 -12.35262 -12.28870 -12.24856 -12.01007 -11.92710 -11.82711 -11.59950 -11.40419 -11.08609 -10.99022 -10.85481 -10.79334 -10.52091 -10.37466 -9.61319 -8.67984 -8.25774 -8.15501 -6.22690 0.09407 0.72424 1.06237 1.40923 1.41367 1.51565 1.64976 2.41333 2.57859 2.95081 3.04806 3.18997 3.58776 3.63757 3.71170 3.91422 3.97507 4.00074 4.09442 4.09972 4.17487 4.23580 4.25703 4.35808 4.42642 4.48867 4.52338 4.54793 4.63808 4.67457 4.68230 4.74075 4.74367 4.75932 4.78419 4.91364 4.95316 5.02070 5.03445 5.09472 5.12513 5.14010 5.20109 5.41915 5.44307 5.47337 5.49959 5.54174 5.63405 5.73869 5.79339 5.88510 5.97183 6.22993 6.29571 6.46868 6.89772 6.93060 7.44824 8.96700 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.001487 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.702501 B =18821.426564 C =19618.399043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.119 4.119 4 C 0.042 3.958 5 C -0.517 4.517 6 H 0.068 0.932 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.149 3.851 14 N -0.735 5.735 15 C 0.210 3.790 16 C -0.213 4.213 17 C -0.075 4.075 18 C -0.171 4.171 19 C -0.034 4.034 20 C -0.031 4.031 21 S -0.286 6.286 22 C -0.051 4.051 23 C -0.146 4.146 24 C 0.061 3.939 25 O -0.403 6.403 26 C 0.066 3.934 27 C -0.133 4.133 28 C -0.188 4.188 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.062 0.938 35 H -0.011 1.011 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.403 0.597 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.065 0.935 52 H 0.110 0.890 53 H 0.086 0.914 54 H 0.068 0.932 55 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 7.120 32.646 33.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.176 4.176 4 C 0.005 3.995 5 C -0.555 4.555 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.024 3.976 14 N -0.364 5.364 15 C 0.105 3.895 16 C -0.237 4.237 17 C -0.094 4.094 18 C -0.192 4.192 19 C -0.036 4.036 20 C -0.178 4.178 21 S -0.053 6.053 22 C -0.180 4.180 23 C -0.186 4.186 24 C -0.017 4.017 25 O -0.322 6.322 26 C -0.012 4.012 27 C -0.172 4.172 28 C -0.213 4.213 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.007 0.993 36 H 0.006 0.994 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.240 0.760 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.126 0.874 51 H 0.083 0.917 52 H 0.128 0.872 53 H 0.104 0.896 54 H 0.086 0.914 55 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.868 6.006 32.026 33.108 hybrid contribution 0.605 1.102 -1.402 1.883 sum -5.264 7.108 30.623 31.875 Atomic orbital electron populations 1.21656 0.94221 1.00746 1.01027 1.20681 0.96227 0.96198 0.93435 1.21651 0.99882 0.95007 1.01068 1.18950 0.94349 0.94159 0.92069 1.21595 1.30493 1.12047 0.91329 0.91414 1.25897 0.95670 0.95851 1.02540 1.70099 1.38694 1.24794 1.24079 0.85578 0.79079 0.78201 0.78982 1.20131 1.21388 1.18705 1.21181 0.97432 0.95111 0.83828 1.44757 1.57111 1.32836 1.01735 1.17994 0.93147 0.92825 0.85521 1.20872 1.05017 0.99120 0.98689 1.21084 0.97770 0.99088 0.91411 1.20920 1.02244 0.97061 0.99021 1.19030 0.96538 0.95567 0.92483 1.22249 0.95672 1.01639 0.98274 1.87512 1.27639 1.53982 1.36149 1.23245 0.99033 1.01518 0.94202 1.22512 0.98868 1.02373 0.94831 1.22745 0.83801 0.98281 0.96909 1.87930 1.17337 1.84003 1.42925 1.22704 0.92377 0.99037 0.87114 1.22013 0.94578 1.01774 0.98877 1.20507 1.06602 1.03497 0.90698 0.91952 0.93011 0.94428 0.94266 0.93006 0.91889 0.99265 0.99364 0.93143 0.93469 0.93727 0.76000 0.86907 0.84471 0.84812 0.87671 0.88417 0.88551 0.90894 0.89552 0.91850 0.87394 0.91665 0.87238 0.89553 0.91357 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 2 C -0.07 -2.46 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.52 -27.78 7.65 25.60 0.20 -27.59 16 6 H 0.07 3.46 5.68 -2.91 -0.02 3.45 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -56.32 13.29 21.45 0.28 -56.03 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.15 5.01 3.80 86.38 0.33 5.34 16 14 N -0.73 -20.58 5.14 -339.43 -1.74 -22.32 16 15 C 0.21 5.71 6.65 38.21 0.25 5.97 16 16 C -0.21 -5.85 9.31 22.40 0.21 -5.64 16 17 C -0.07 -1.73 10.04 22.25 0.22 -1.50 16 18 C -0.17 -3.57 9.70 22.29 0.22 -3.36 16 19 C -0.03 -0.71 5.14 -19.88 -0.10 -0.82 16 20 C -0.03 -0.48 5.78 71.24 0.41 -0.07 16 21 S -0.29 -5.14 21.14 -56.49 -1.19 -6.33 16 22 C -0.05 -0.62 2.74 30.71 0.08 -0.54 16 23 C -0.15 -1.49 5.30 30.69 0.16 -1.33 16 24 C 0.06 0.56 6.84 72.01 0.49 1.05 16 25 O -0.40 -5.51 10.77 -148.98 -1.60 -7.12 16 26 C 0.07 0.64 6.84 72.01 0.49 1.13 16 27 C -0.13 -1.57 5.43 30.68 0.17 -1.40 16 28 C -0.19 -4.45 9.55 22.40 0.21 -4.23 16 29 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 30 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 34 H 0.06 1.75 6.86 -2.39 -0.02 1.74 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16 39 H 0.04 1.58 7.95 -2.39 -0.02 1.57 16 40 H 0.40 10.18 6.18 -92.71 -0.57 9.61 16 41 H 0.11 3.24 6.73 -2.91 -0.02 3.22 16 42 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.10 1.26 7.21 -2.39 -0.02 1.25 16 45 H 0.10 1.30 8.08 -2.39 -0.02 1.28 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 0.68 7.10 -2.38 -0.02 0.66 16 49 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 54 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 55 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -64.82 436.12 3.12 -61.71 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.28 Total: 24.45 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 5.06 Total: -40.06 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.46 Total: -78.35 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -1.60 Total: -7.12 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.19 Total: -6.33 kcal Total: -64.82 3.12 -61.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095429211.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.846 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds