Wall clock time and date at job start Tue Mar 31 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48499 * 109.46909 * 239.99614 * 3 2 1 5 5 H 1.48499 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47191 * 119.99839 * 3 2 1 7 7 C 1.40234 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99325 * 179.97438 * 7 2 1 9 9 C 1.39993 * 120.00136 * 0.02562 * 7 2 1 10 10 N 1.32981 * 125.96675 * 0.30941 * 9 7 2 11 11 C 1.32758 * 109.22770 * 180.17390 * 10 9 7 12 12 C 1.36221 * 108.61457 * 359.55839 * 11 10 9 13 13 N 1.36415 * 107.19519 * 0.26754 * 12 11 10 14 14 C 1.46500 * 126.55311 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.46778 * 265.02611 * 14 13 12 16 16 C 1.50702 * 109.46869 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00096 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99788 * 180.02562 * 16 15 14 19 19 C 1.39926 * 120.00204 * 175.37370 * 18 16 15 20 20 C 1.38898 * 120.06276 * 214.81368 * 19 18 16 21 21 C 1.38100 * 119.94450 * 179.71711 * 20 19 18 22 22 C 1.38287 * 120.08068 * 0.55525 * 21 20 19 23 23 C 1.38354 * 120.13041 * 359.71708 * 22 21 20 24 24 Br 1.89104 * 119.97134 * 180.02562 * 23 22 21 25 25 C 1.38215 * 120.04970 * 0.02562 * 23 22 21 26 26 H 0.97001 * 120.00142 * 359.97438 * 1 2 3 27 27 H 1.07994 * 125.69024 * 179.82912 * 11 10 9 28 28 H 1.07997 * 126.39525 * 180.30884 * 12 11 10 29 29 H 1.09003 * 109.47310 * 25.01628 * 14 13 12 30 30 H 1.08998 * 109.47696 * 145.02379 * 14 13 12 31 31 H 1.09007 * 109.46846 * 299.99759 * 15 14 13 32 32 H 1.08991 * 109.47507 * 59.99672 * 15 14 13 33 33 H 0.97002 * 119.99802 * 355.37233 * 18 16 15 34 34 H 1.07997 * 120.02936 * 359.97438 * 20 19 18 35 35 H 1.07995 * 119.96123 * 180.24932 * 21 20 19 36 36 H 1.08005 * 119.93536 * 179.74356 * 22 21 20 37 37 H 1.08004 * 120.04448 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6966 1.2125 7 6 2.0080 -1.2145 0.0005 8 1 3.0881 -1.2144 0.0001 9 6 1.3081 -2.4268 0.0005 10 7 -0.0145 -2.5651 -0.0058 11 6 -0.3190 -3.8573 0.0003 12 6 0.8377 -4.5766 0.0008 13 7 1.8684 -3.6830 0.0010 14 6 3.2986 -4.0005 0.0021 15 6 3.8226 -3.9881 1.4396 16 6 5.2939 -4.3142 1.4407 17 8 5.8669 -4.5351 0.3948 18 7 5.9728 -4.3612 2.6040 19 6 7.3146 -4.7580 2.6155 20 6 7.8156 -5.4862 3.6870 21 6 9.1388 -5.8816 3.6931 22 6 9.9681 -5.5437 2.6393 23 6 9.4738 -4.8137 1.5731 24 35 10.6117 -4.3547 0.1341 25 6 8.1491 -4.4196 1.5589 26 1 -0.4850 0.8400 0.0004 27 1 -1.3173 -4.2693 0.0000 28 1 0.9228 -5.6533 0.0005 29 1 3.4517 -4.9886 -0.4319 30 1 3.8362 -3.2576 -0.5870 31 1 3.6694 -3.0000 1.8736 32 1 3.2850 -4.7310 2.0287 33 1 5.5313 -4.1199 3.4333 34 1 7.1700 -5.7464 4.5127 35 1 9.5276 -6.4512 4.5242 36 1 11.0036 -5.8507 2.6485 37 1 7.7632 -3.8501 0.7263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:15 Heat of formation + Delta-G solvation = 53.535541 kcal Electronic energy + Delta-G solvation = -22945.729568 eV Core-core repulsion = 19349.304266 eV Total energy + Delta-G solvation = -3596.425302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80241 -39.86489 -38.73547 -35.11663 -33.77735 -33.29472 -32.43206 -30.64070 -29.52291 -28.83115 -28.61964 -25.02565 -24.27605 -23.00218 -22.19262 -20.49287 -19.89424 -19.21166 -17.96480 -17.38901 -16.56410 -16.46316 -15.85638 -15.44353 -15.08258 -14.66055 -14.53153 -13.98793 -13.83645 -13.64026 -13.33830 -13.17438 -12.65297 -12.40159 -12.22666 -11.83680 -11.71258 -11.67028 -11.30142 -11.24778 -11.12056 -10.81449 -10.52766 -10.44694 -10.42383 -10.15488 -9.94575 -9.21432 -9.04461 -8.48134 -8.00097 -7.76774 -7.06264 -6.40162 -4.28873 0.75024 0.97360 1.38639 2.44444 2.77102 3.05755 3.15214 3.16307 3.35393 3.65424 3.99941 4.25522 4.50239 4.72740 4.73033 4.79888 4.82015 5.04865 5.11444 5.22416 5.24194 5.46631 5.67534 5.74084 5.85189 5.95044 5.98465 6.00528 6.04521 6.28499 6.34316 6.57593 6.60418 7.11474 7.13586 7.28625 7.60842 7.93541 8.07770 8.21961 8.57940 8.96294 9.31739 10.25219 10.52961 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.002450 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.392197 B =11423.579342 C =12462.665434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.376 3.624 10 N -0.519 5.519 11 C -0.014 4.014 12 C -0.180 4.180 13 N -0.509 5.509 14 C 0.148 3.852 15 C -0.154 4.154 16 C 0.522 3.478 17 O -0.517 6.517 18 N -0.678 5.678 19 C 0.157 3.843 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.112 4.112 23 C -0.072 4.072 24 Br -0.048 7.048 25 C -0.095 4.095 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.415 0.585 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.056 -9.523 8.646 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.503 4.503 8 H 0.094 0.906 9 C 0.134 3.866 10 N -0.240 5.240 11 C -0.166 4.166 12 C -0.309 4.309 13 N -0.199 5.199 14 C 0.022 3.978 15 C -0.195 4.195 16 C 0.311 3.689 17 O -0.391 6.391 18 N -0.323 5.323 19 C 0.062 3.938 20 C -0.154 4.154 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.152 4.152 24 Br 0.037 6.963 25 C -0.117 4.117 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.252 0.748 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 21.097 -8.822 7.287 24.000 hybrid contribution 0.481 -0.125 0.839 0.975 sum 21.578 -8.947 8.125 24.732 Atomic orbital electron populations 1.70002 1.06872 1.27692 1.32058 1.25674 0.94719 1.00096 0.93571 0.86418 0.79890 0.80970 0.79577 1.19173 1.20327 1.19284 1.18057 0.93280 0.87681 1.51280 0.90595 1.20290 0.87559 0.83458 0.95318 1.71300 1.10205 1.14505 1.27992 1.22145 0.95938 0.92131 1.06435 1.21829 0.88713 0.93983 1.26424 1.45414 1.03767 1.07434 1.63331 1.20877 0.81197 1.02140 0.93557 1.22136 0.89801 1.05413 1.02160 1.21083 0.89812 0.75233 0.82781 1.90712 1.70295 1.46992 1.31112 1.43676 1.09523 1.67588 1.11562 1.17700 0.83962 0.96437 0.95729 1.21078 0.96702 0.98635 0.99031 1.20930 0.92889 0.99476 0.98235 1.21087 1.00562 0.98640 0.92968 1.21656 0.94460 1.03865 0.95196 1.96734 1.63531 1.92495 1.43509 1.21332 0.90724 0.99798 0.99880 0.91670 0.84954 0.84848 0.90697 0.89610 0.87107 0.88331 0.74802 0.84961 0.84732 0.84998 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.56 11.90 55.56 0.66 -19.90 16 2 C 0.08 2.16 5.50 -17.29 -0.10 2.07 16 3 Si 0.91 18.98 29.56 -169.99 -5.03 13.95 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.29 9.02 -38.17 -0.34 -12.64 16 8 H 0.08 1.86 7.29 -52.48 -0.38 1.47 16 9 C 0.38 10.23 7.43 -155.60 -1.16 9.07 16 10 N -0.52 -14.95 9.41 -12.73 -0.12 -15.07 16 11 C -0.01 -0.35 11.85 -17.88 -0.21 -0.56 16 12 C -0.18 -4.07 11.60 -16.24 -0.19 -4.26 16 13 N -0.51 -11.72 2.81 -115.97 -0.33 -12.05 16 14 C 0.15 2.73 5.14 -4.04 -0.02 2.71 16 15 C -0.15 -2.25 6.03 -27.88 -0.17 -2.42 16 16 C 0.52 7.17 7.67 -10.98 -0.08 7.08 16 17 O -0.52 -8.66 13.42 5.55 0.07 -8.58 16 18 N -0.68 -7.16 5.34 -9.86 -0.05 -7.22 16 19 C 0.16 1.74 6.30 -83.70 -0.53 1.21 16 20 C -0.13 -1.13 9.97 -39.39 -0.39 -1.52 16 21 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 22 C -0.11 -1.00 9.78 -39.52 -0.39 -1.38 16 23 C -0.07 -0.80 6.22 -39.55 -0.25 -1.05 16 24 Br -0.05 -0.52 33.70 -68.01 -2.29 -2.81 16 25 C -0.10 -1.21 8.44 -39.37 -0.33 -1.54 16 26 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 27 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 28 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 29 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 30 H 0.09 1.67 7.56 -51.93 -0.39 1.28 16 31 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.42 3.10 8.82 -40.82 -0.36 2.74 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.15 2.23 6.23 -52.48 -0.33 1.91 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -33.22 345.28 -10.40 -43.63 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.98 Total: 7.20 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -4.55 Total: -4.36 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.16 Total: -54.23 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.22 -10.40 -43.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.163 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds