Wall clock time and date at job start Tue Mar 31 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48499 * 109.46909 * 239.99614 * 3 2 1 5 5 H 1.48499 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47191 * 119.99839 * 3 2 1 7 7 C 1.40234 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99325 * 179.97438 * 7 2 1 9 9 C 1.39993 * 120.00136 * 0.02562 * 7 2 1 10 10 N 1.32981 * 125.96675 * 0.30941 * 9 7 2 11 11 C 1.32758 * 109.22770 * 180.17390 * 10 9 7 12 12 C 1.36221 * 108.61457 * 359.55839 * 11 10 9 13 13 N 1.36415 * 107.19519 * 0.26754 * 12 11 10 14 14 C 1.46500 * 126.55311 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.46778 * 265.02611 * 14 13 12 16 16 C 1.50702 * 109.46869 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00096 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99788 * 180.02562 * 16 15 14 19 19 C 1.39926 * 120.00204 * 175.37370 * 18 16 15 20 20 C 1.38898 * 120.06276 * 214.81368 * 19 18 16 21 21 C 1.38100 * 119.94450 * 179.71711 * 20 19 18 22 22 C 1.38287 * 120.08068 * 0.55525 * 21 20 19 23 23 C 1.38354 * 120.13041 * 359.71708 * 22 21 20 24 24 Br 1.89104 * 119.97134 * 180.02562 * 23 22 21 25 25 C 1.38215 * 120.04970 * 0.02562 * 23 22 21 26 26 H 0.97001 * 120.00142 * 359.97438 * 1 2 3 27 27 H 1.07994 * 125.69024 * 179.82912 * 11 10 9 28 28 H 1.07997 * 126.39525 * 180.30884 * 12 11 10 29 29 H 1.09003 * 109.47310 * 25.01628 * 14 13 12 30 30 H 1.08998 * 109.47696 * 145.02379 * 14 13 12 31 31 H 1.09007 * 109.46846 * 299.99759 * 15 14 13 32 32 H 1.08991 * 109.47507 * 59.99672 * 15 14 13 33 33 H 0.97002 * 119.99802 * 355.37233 * 18 16 15 34 34 H 1.07997 * 120.02936 * 359.97438 * 20 19 18 35 35 H 1.07995 * 119.96123 * 180.24932 * 21 20 19 36 36 H 1.08005 * 119.93536 * 179.74356 * 22 21 20 37 37 H 1.08004 * 120.04448 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6966 1.2125 7 6 2.0080 -1.2145 0.0005 8 1 3.0881 -1.2144 0.0001 9 6 1.3081 -2.4268 0.0005 10 7 -0.0145 -2.5651 -0.0058 11 6 -0.3190 -3.8573 0.0003 12 6 0.8377 -4.5766 0.0008 13 7 1.8684 -3.6830 0.0010 14 6 3.2986 -4.0005 0.0021 15 6 3.8226 -3.9881 1.4396 16 6 5.2939 -4.3142 1.4407 17 8 5.8669 -4.5351 0.3948 18 7 5.9728 -4.3612 2.6040 19 6 7.3146 -4.7580 2.6155 20 6 7.8156 -5.4862 3.6870 21 6 9.1388 -5.8816 3.6931 22 6 9.9681 -5.5437 2.6393 23 6 9.4738 -4.8137 1.5731 24 35 10.6117 -4.3547 0.1341 25 6 8.1491 -4.4196 1.5589 26 1 -0.4850 0.8400 0.0004 27 1 -1.3173 -4.2693 0.0000 28 1 0.9228 -5.6533 0.0005 29 1 3.4517 -4.9886 -0.4319 30 1 3.8362 -3.2576 -0.5870 31 1 3.6694 -3.0000 1.8736 32 1 3.2850 -4.7310 2.0287 33 1 5.5313 -4.1199 3.4333 34 1 7.1700 -5.7464 4.5127 35 1 9.5276 -6.4512 4.5242 36 1 11.0036 -5.8507 2.6485 37 1 7.7632 -3.8501 0.7263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095438679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:15 Heat of formation + Delta-G solvation = 33.994139 kcal Electronic energy + Delta-G solvation = -22946.576947 eV Core-core repulsion = 19349.304266 eV Total energy + Delta-G solvation = -3597.272680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94732 -41.53353 -39.64404 -36.06027 -35.40831 -35.15610 -33.18615 -31.78221 -30.59415 -30.49390 -29.87318 -26.89771 -25.63520 -23.87476 -23.08319 -21.84786 -21.51388 -20.99528 -18.87074 -18.75163 -18.02480 -17.36395 -17.23928 -16.85815 -16.33177 -15.92133 -15.79174 -15.09725 -14.97958 -14.71941 -14.45943 -14.42858 -14.34249 -13.98110 -13.55173 -13.27323 -13.00011 -12.92361 -12.78142 -12.49491 -12.36329 -12.24713 -12.08505 -11.89551 -11.36446 -11.24535 -11.10377 -11.02443 -9.90290 -9.81719 -9.74789 -9.28228 -9.01144 -8.32126 -6.27997 0.01028 0.20749 0.59855 1.36271 1.41253 1.43527 1.55477 1.72820 1.92404 2.26570 2.61908 2.66833 2.78619 3.59315 3.63681 3.85504 3.87400 3.95592 4.10301 4.12762 4.33808 4.39599 4.43011 4.55433 4.62118 4.72025 4.78424 4.90594 5.11260 5.20445 5.21332 5.28008 5.33779 5.38575 5.71408 5.83794 6.17873 6.25424 6.29188 6.69888 6.96390 7.02509 7.39487 8.31967 8.63929 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.002450 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.392197 B =11423.579342 C =12462.665434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.344 3.656 10 N -0.566 5.566 11 C -0.055 4.055 12 C -0.151 4.151 13 N -0.506 5.506 14 C 0.144 3.856 15 C -0.139 4.139 16 C 0.528 3.472 17 O -0.552 6.552 18 N -0.660 5.660 19 C 0.137 3.863 20 C -0.122 4.122 21 C -0.087 4.087 22 C -0.110 4.110 23 C -0.088 4.088 24 Br -0.057 7.057 25 C -0.121 4.121 26 H 0.276 0.724 27 H 0.151 0.849 28 H 0.176 0.824 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.431 0.569 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.152 0.848 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.077 -10.911 10.923 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.529 4.529 8 H 0.103 0.897 9 C 0.100 3.900 10 N -0.288 5.288 11 C -0.206 4.206 12 C -0.282 4.282 13 N -0.195 5.195 14 C 0.020 3.980 15 C -0.180 4.180 16 C 0.317 3.683 17 O -0.429 6.429 18 N -0.307 5.307 19 C 0.042 3.958 20 C -0.142 4.142 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.168 4.168 24 Br 0.029 6.971 25 C -0.143 4.143 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.193 0.807 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.271 0.729 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.170 0.830 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.148 -10.241 9.610 27.075 hybrid contribution -0.089 0.107 0.157 0.210 sum 23.059 -10.133 9.767 27.015 Atomic orbital electron populations 1.70142 1.08821 1.28844 1.33841 1.26664 0.95485 1.03762 0.92477 0.85241 0.78421 0.75891 0.79935 1.18886 1.19694 1.17873 1.18437 0.93861 0.88358 1.52197 0.89693 1.20529 0.87726 0.85011 0.96750 1.71178 1.11702 1.16792 1.29109 1.22595 0.97866 0.91539 1.08621 1.22439 0.87781 0.95601 1.22330 1.45624 1.05607 1.06459 1.61853 1.21041 0.78623 1.02153 0.96170 1.21880 0.90790 1.05807 0.99486 1.20782 0.89317 0.75043 0.83195 1.90718 1.70752 1.48905 1.32558 1.43400 1.09509 1.66585 1.11192 1.17887 0.83623 0.97837 0.96499 1.21449 0.97481 0.96797 0.98516 1.21411 0.92241 0.98424 0.98498 1.21436 1.01832 0.97398 0.92328 1.21781 0.94023 1.05019 0.95992 1.96708 1.63402 1.92696 1.44324 1.21190 0.91932 1.01144 1.00060 0.91421 0.83138 0.80711 0.89290 0.91281 0.87752 0.86284 0.72916 0.81805 0.80901 0.83006 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.28 11.90 21.88 0.26 -45.02 16 2 C 0.04 1.88 5.50 85.35 0.47 2.35 16 3 Si 0.98 39.47 29.56 68.60 2.03 41.50 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 7 C -0.49 -26.57 9.02 23.18 0.21 -26.36 16 8 H 0.08 4.25 7.29 -2.91 -0.02 4.23 16 9 C 0.34 19.13 7.43 133.59 0.99 20.13 16 10 N -0.57 -33.46 9.41 -194.18 -1.83 -35.29 16 11 C -0.06 -2.78 11.85 84.08 1.00 -1.79 16 12 C -0.15 -6.63 11.60 83.51 0.97 -5.66 16 13 N -0.51 -23.18 2.81 -520.82 -1.46 -24.65 16 14 C 0.14 5.26 5.14 86.38 0.44 5.71 16 15 C -0.14 -3.90 6.03 29.85 0.18 -3.72 16 16 C 0.53 14.06 7.67 87.66 0.67 14.73 16 17 O -0.55 -18.68 13.42 -3.04 -0.04 -18.72 16 18 N -0.66 -12.80 5.34 -303.51 -1.62 -14.42 16 19 C 0.14 2.78 6.30 38.15 0.24 3.02 16 20 C -0.12 -1.59 9.97 22.40 0.22 -1.37 16 21 C -0.09 -0.96 10.04 22.25 0.22 -0.73 16 22 C -0.11 -1.66 9.78 22.31 0.22 -1.44 16 23 C -0.09 -1.90 6.22 22.29 0.14 -1.76 16 24 Br -0.06 -1.22 33.70 -20.37 -0.69 -1.91 16 25 C -0.12 -3.05 8.44 22.41 0.19 -2.86 16 26 H 0.28 14.43 8.29 -92.71 -0.77 13.66 16 27 H 0.15 6.66 8.06 -2.91 -0.02 6.64 16 28 H 0.18 6.09 8.06 -2.91 -0.02 6.07 16 29 H 0.09 2.99 8.09 -2.39 -0.02 2.97 16 30 H 0.07 2.75 7.56 -2.39 -0.02 2.73 16 31 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 32 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.43 5.32 8.82 -92.71 -0.82 4.51 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.12 3.77 6.23 -2.91 -0.02 3.75 16 Total: -1.00 -75.96 345.28 3.12 -72.84 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.30 Total: 25.43 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 6.17 Total: 0.23 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -4.65 Total: -119.38 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.72 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -0.69 Total: -1.91 kcal Total: -75.96 3.12 -72.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.832 kcal (2) G-P(sol) polarization free energy of solvation -75.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds