Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48496 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47227 * 299.99690 * 3 2 1 6 6 H 1.48507 * 109.47396 * 59.99759 * 3 2 1 7 7 C 1.37871 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47455 * 179.97438 * 9 7 2 11 11 C 1.34830 * 119.86083 * 89.99729 * 10 9 7 12 12 O 1.21781 * 120.30729 * 0.27773 * 11 10 9 13 13 C 1.41645 * 119.38529 * 180.02562 * 11 10 9 14 14 Br 1.89097 * 120.44669 * 180.02562 * 13 11 10 15 15 C 1.35045 * 119.10256 * 0.02562 * 13 11 10 16 16 N 1.36911 * 119.67257 * 359.97438 * 15 13 11 17 17 C 1.46503 * 119.69295 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46872 * 90.00401 * 17 16 15 19 19 C 1.38234 * 119.99608 * 269.72508 * 18 17 16 20 20 C 1.38238 * 119.99909 * 179.76881 * 19 18 17 21 21 C 1.38233 * 119.99695 * 0.50596 * 20 19 18 22 22 C 1.38230 * 120.00205 * 359.74732 * 21 20 19 23 23 C 1.38233 * 120.00133 * 89.99987 * 18 17 16 24 24 C 1.34541 * 120.61731 * 0.02562 * 16 15 13 25 25 O 1.21588 * 119.52967 * 179.97438 * 24 16 15 26 26 H 0.97001 * 120.00228 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47175 * 59.99802 * 9 7 2 28 28 H 1.09005 * 109.47231 * 299.99514 * 9 7 2 29 29 H 1.07997 * 120.16697 * 179.97438 * 15 13 11 30 30 H 1.09000 * 109.47289 * 209.99802 * 17 16 15 31 31 H 1.08996 * 109.47084 * 329.99762 * 17 16 15 32 32 H 1.08007 * 120.00282 * 0.02562 * 19 18 17 33 33 H 1.07999 * 120.00357 * 180.23297 * 20 19 18 34 34 H 1.08009 * 119.99879 * 179.72612 * 21 20 19 35 35 H 1.08001 * 120.00285 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.00070 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6394 -4.1229 1.1698 12 8 2.2419 -3.6657 2.2263 13 6 3.5602 -5.1991 1.1581 14 35 4.1912 -5.9381 2.7803 15 6 3.9814 -5.6902 -0.0273 16 7 3.5138 -5.1435 -1.1921 17 6 3.9700 -5.6763 -2.4783 18 6 3.0468 -6.7826 -2.9196 19 6 3.3097 -8.0894 -2.5535 20 6 2.4602 -9.1037 -2.9542 21 6 1.3537 -8.8125 -3.7298 22 6 1.0937 -7.5064 -4.1002 23 6 1.9402 -6.4914 -3.6951 24 6 2.6393 -4.1214 -1.1667 25 8 2.2373 -3.6505 -2.2131 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 4.6836 -6.5103 -0.0563 30 1 3.9657 -4.8807 -3.2234 31 1 4.9815 -6.0681 -2.3711 32 1 4.1766 -8.3175 -1.9509 33 1 2.6635 -10.1242 -2.6651 34 1 0.6924 -9.6055 -4.0466 35 1 0.2293 -7.2788 -4.7065 36 1 1.7375 -5.4710 -3.9852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095438718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = -20.017865 kcal Electronic energy + Delta-G solvation = -24243.971254 eV Core-core repulsion = 20546.637775 eV Total energy + Delta-G solvation = -3697.333479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.021 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.36051 -40.50491 -39.70241 -38.34876 -36.51683 -35.01708 -34.11257 -32.53956 -31.78418 -30.53129 -29.79386 -27.45373 -26.38551 -24.40414 -24.05227 -23.37561 -22.28333 -20.49436 -19.11799 -18.75779 -18.08580 -17.85970 -17.40718 -16.90941 -16.29316 -16.25290 -15.97788 -15.85433 -15.34612 -14.95567 -14.68780 -14.57454 -14.30127 -14.20719 -13.63090 -13.46219 -13.34781 -13.17285 -12.99483 -12.70998 -12.46547 -12.23349 -11.96244 -11.91654 -11.78566 -11.56374 -11.39963 -11.19163 -10.73884 -10.59227 -9.81593 -9.80728 -9.49110 -8.35058 -6.49223 -0.17066 0.09838 0.47848 0.51012 0.87107 1.28197 1.33481 1.35460 1.47977 1.98882 2.29852 2.41008 2.89335 2.97945 3.30694 3.68183 3.69640 3.84684 4.14204 4.17080 4.20829 4.31024 4.50861 4.56347 4.63464 4.65953 4.77372 4.94180 5.02496 5.06960 5.14841 5.23882 5.53333 5.54496 5.63010 5.65534 5.81340 6.10445 6.19802 6.52590 6.61282 6.86980 7.19974 8.75883 Molecular weight = 364.02amu Principal moments of inertia in cm(-1) A = 0.008186 B = 0.004706 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.502363 B = 5948.252482 C = 8663.951672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.263 3.737 10 N -0.546 5.546 11 C 0.540 3.460 12 O -0.543 6.543 13 C -0.307 4.307 14 Br 0.022 6.978 15 C 0.252 3.748 16 N -0.515 5.515 17 C 0.146 3.854 18 C -0.131 4.131 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.117 4.117 24 C 0.683 3.317 25 O -0.554 6.554 26 H 0.272 0.728 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.250 0.750 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.385 -23.596 -4.693 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.143 3.857 10 N -0.288 5.288 11 C 0.335 3.665 12 O -0.420 6.420 13 C -0.395 4.395 14 Br 0.105 6.895 15 C 0.123 3.877 16 N -0.233 5.233 17 C 0.028 3.972 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.136 4.136 24 C 0.386 3.614 25 O -0.428 6.428 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.266 0.734 30 H 0.115 0.885 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.945 -23.143 -4.266 26.859 hybrid contribution -0.785 1.666 -0.337 1.872 sum 12.160 -21.477 -4.603 25.106 Atomic orbital electron populations 1.70047 1.07589 1.28599 1.49967 1.25865 0.95943 1.03174 0.93722 0.85247 0.78562 0.77907 0.78383 1.19163 1.19341 1.19637 1.21391 0.92928 0.91271 1.52917 0.93122 1.19030 0.87302 0.82142 0.97183 1.46742 1.42453 1.33481 1.06095 1.17419 0.82085 0.83650 0.83311 1.90842 1.58448 1.62307 1.30416 1.22172 1.13697 1.07880 0.95793 1.96606 1.85513 1.80555 1.26864 1.23048 0.90403 0.92861 0.81421 1.45348 1.39190 1.29278 1.09469 1.21241 0.99164 0.95586 0.81228 1.20085 0.97240 0.95411 1.00449 1.21486 1.00566 0.90670 0.98562 1.21564 0.94451 1.00789 0.97698 1.21555 0.98115 0.96226 0.97487 1.21370 0.99816 0.93711 1.01170 1.21322 0.95170 0.99178 0.97898 1.16227 0.80432 0.80637 0.84065 1.90948 1.59188 1.61609 1.31039 0.91948 0.95270 0.95673 0.73441 0.88523 0.81606 0.81614 0.82846 0.84075 0.85854 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.70 13.29 21.45 0.28 -57.42 16 2 C 0.01 0.77 5.46 84.65 0.46 1.24 16 3 Si 0.98 46.61 29.54 68.60 2.03 48.64 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -33.63 9.38 25.60 0.24 -33.39 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.26 15.50 4.85 85.63 0.42 15.92 16 10 N -0.55 -26.41 2.54 -786.86 -2.00 -28.41 16 11 C 0.54 24.18 7.44 85.07 0.63 24.81 16 12 O -0.54 -28.74 16.12 -4.61 -0.07 -28.81 16 13 C -0.31 -9.34 6.24 22.38 0.14 -9.20 16 14 Br 0.02 0.55 33.27 -20.37 -0.68 -0.13 16 15 C 0.25 5.05 10.11 83.16 0.84 5.89 16 16 N -0.52 -13.33 2.60 -660.82 -1.72 -15.05 16 17 C 0.15 2.51 5.47 85.63 0.47 2.98 16 18 C -0.13 -2.43 5.46 -19.87 -0.11 -2.54 16 19 C -0.09 -1.14 9.70 22.27 0.22 -0.92 16 20 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 21 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 22 C -0.14 -3.03 10.05 22.27 0.22 -2.81 16 23 C -0.12 -2.88 9.69 22.27 0.22 -2.67 16 24 C 0.68 27.88 8.11 179.19 1.45 29.34 16 25 O -0.55 -25.93 14.79 -3.99 -0.06 -25.99 16 26 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.03 1.84 7.39 -2.39 -0.02 1.82 16 28 H 0.03 1.62 7.42 -2.38 -0.02 1.60 16 29 H 0.25 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.10 2.08 7.32 -2.39 -0.02 2.06 16 31 H 0.17 0.83 7.97 -2.39 -0.02 0.81 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.10 3.07 7.50 -2.91 -0.02 3.05 16 Total: -1.00 -86.88 339.54 4.55 -82.33 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.12 Total: -0.82 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 5.65 Total: 25.64 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.43 Total: -100.87 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.13 Total: -54.80 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 35 Polarization: 0.55 SS G_CDS: -0.68 Total: -0.13 kcal Total: -86.88 4.55 -82.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.312 kcal (2) G-P(sol) polarization free energy of solvation -86.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds