Wall clock time and date at job start Tue Mar 31 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99663 * 2 1 4 4 H 1.48507 * 109.46682 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47126 * 299.99477 * 3 2 1 6 6 H 1.48494 * 109.47288 * 60.00120 * 3 2 1 7 7 C 1.37872 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00095 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99824 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40212 * 66.45813 * 9 7 2 11 11 O 1.42100 * 106.40269 * 293.53767 * 9 7 2 12 12 N 1.65607 * 107.21896 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99578 * 64.99894 * 12 9 7 14 14 C 1.52995 * 109.46637 * 165.21784 * 13 12 9 15 15 C 1.50698 * 112.85510 * 301.11335 * 14 13 12 16 16 C 1.38258 * 119.99772 * 283.13751 * 15 14 13 17 17 C 1.38221 * 119.99784 * 179.97438 * 16 15 14 18 18 C 1.38258 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.38212 * 119.99955 * 359.77093 * 18 17 16 20 20 C 1.50699 * 120.00029 * 180.25356 * 19 18 17 21 21 F 1.39899 * 109.47199 * 270.21472 * 20 19 18 22 22 F 1.39900 * 109.46810 * 30.21141 * 20 19 18 23 23 F 1.39893 * 109.47329 * 150.21061 * 20 19 18 24 24 C 1.38210 * 119.99947 * 103.15578 * 15 14 13 25 25 C 1.53788 * 113.68965 * 72.38379 * 14 13 12 26 26 C 1.53787 * 87.07860 * 89.12486 * 25 14 13 27 27 C 1.53778 * 87.08320 * 25.43173 * 26 25 14 28 28 H 0.97002 * 120.00335 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99943 * 245.00286 * 12 9 7 30 30 H 1.09003 * 109.46774 * 45.22046 * 13 12 9 31 31 H 1.08996 * 109.47338 * 285.22039 * 13 12 9 32 32 H 1.08002 * 120.00229 * 359.97438 * 16 15 14 33 33 H 1.07995 * 119.99861 * 179.97438 * 17 16 15 34 34 H 1.07994 * 119.99685 * 179.97438 * 18 17 16 35 35 H 1.07995 * 120.00203 * 359.97438 * 24 15 14 36 36 H 1.09003 * 113.61210 * 203.66982 * 25 14 13 37 37 H 1.08994 * 113.61352 * 334.57339 * 25 14 13 38 38 H 1.09002 * 113.61308 * 270.87948 * 26 25 14 39 39 H 1.09006 * 113.61217 * 139.98547 * 26 25 14 40 40 H 1.08993 * 113.61296 * 220.01756 * 27 26 25 41 41 H 1.09004 * 113.61063 * 89.11758 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4510 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.1395 -4.1087 1.1505 14 6 3.8090 -5.4823 1.0743 15 6 2.8171 -6.6167 1.0584 16 6 2.1929 -7.0056 2.2291 17 6 1.2828 -8.0458 2.2145 18 6 0.9971 -8.6977 1.0292 19 6 1.6180 -8.3061 -0.1419 20 6 1.3023 -9.0129 -1.4349 21 9 2.1769 -10.0919 -1.6022 22 9 -0.0154 -9.4817 -1.4004 23 9 1.4522 -8.1213 -2.5024 24 6 2.5318 -7.2686 -0.1264 25 6 4.8819 -5.5867 -0.0225 26 6 5.8913 -5.0941 1.0279 27 6 4.9448 -5.6713 2.0936 28 1 -0.4851 0.8400 -0.0004 29 1 2.3173 -4.5324 -0.7608 30 1 2.5616 -4.0367 2.0719 31 1 3.9032 -3.3311 1.1388 32 1 2.4164 -6.4967 3.1551 33 1 0.7955 -8.3499 3.1290 34 1 0.2863 -9.5107 1.0178 35 1 3.0193 -6.9648 -1.0410 36 1 5.0647 -6.6074 -0.3587 37 1 4.7334 -4.8888 -0.8464 38 1 5.9846 -4.0088 1.0685 39 1 6.8550 -5.6011 0.9790 40 1 4.8471 -5.0417 2.9779 41 1 5.1449 -6.7151 2.3359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:12 Heat of formation + Delta-G solvation = -204.710243 kcal Electronic energy + Delta-G solvation = -31478.442445 eV Core-core repulsion = 26648.973761 eV Total energy + Delta-G solvation = -4829.468684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.20936 -47.71370 -47.68209 -40.62874 -38.32194 -35.19611 -33.94186 -33.79317 -33.04588 -32.17026 -31.29064 -27.06838 -26.29030 -26.13651 -25.44292 -23.82651 -22.36424 -21.53572 -19.19197 -18.80331 -18.55199 -18.39402 -17.94412 -17.39250 -16.45353 -16.20480 -15.96684 -15.38030 -15.15978 -14.75312 -14.58722 -14.48450 -14.41369 -14.16622 -14.10226 -14.01878 -13.82501 -13.78049 -13.42710 -13.23004 -12.90461 -12.71419 -12.52764 -12.30418 -12.03746 -11.90467 -11.63757 -11.35300 -11.24792 -11.24373 -10.76734 -10.60158 -10.47950 -10.28086 -10.25648 -10.20857 -10.16072 -9.27968 -9.26510 -9.00839 -8.89335 -8.47568 -6.70566 -5.32601 0.86229 1.16264 2.34485 2.59820 3.04534 3.13079 3.19504 3.38325 3.64734 3.94914 4.04734 4.34520 4.37195 4.42806 4.57047 4.63974 4.71830 4.78945 4.83608 4.92191 4.96293 5.14241 5.30694 5.46821 5.57453 5.61200 5.64654 5.71695 5.79160 5.85584 5.92157 5.98118 5.99963 6.06738 6.17343 6.22824 6.38010 6.40262 6.51999 6.66989 6.83348 7.31547 7.88754 7.97286 8.88587 10.23605 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003464 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.476883 B = 8081.699430 C = 9038.473133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.135 6.135 13 C 0.156 3.844 14 C -0.055 4.055 15 C -0.053 4.053 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.079 4.079 19 C -0.183 4.183 20 C 0.508 3.492 21 F -0.180 7.180 22 F -0.178 7.178 23 F -0.174 7.174 24 C -0.069 4.069 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.123 4.123 28 H 0.290 0.710 29 H 0.400 0.600 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -16.456 3.704 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.154 5.154 8 H 0.121 0.879 9 S 2.815 3.185 10 O -0.997 6.997 11 O -0.997 6.997 12 N -0.889 5.889 13 C 0.029 3.971 14 C -0.056 4.056 15 C -0.053 4.053 16 C -0.095 4.095 17 C -0.135 4.135 18 C -0.097 4.097 19 C -0.184 4.184 20 C 0.454 3.546 21 F -0.162 7.162 22 F -0.159 7.159 23 F -0.155 7.155 24 C -0.087 4.087 25 C -0.173 4.173 26 C -0.177 4.177 27 C -0.161 4.161 28 H 0.101 0.899 29 H 0.231 0.769 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.580 -16.407 3.842 18.910 hybrid contribution 0.803 0.826 -0.642 1.319 sum 9.382 -15.581 3.200 18.467 Atomic orbital electron populations 1.69907 1.06797 1.30617 1.40143 1.24748 0.94442 1.00829 0.88519 0.86146 0.80425 0.80490 0.78567 1.18618 1.19621 1.19622 1.30584 1.06103 1.11897 1.66808 0.87932 1.00406 0.72090 0.73207 0.72842 1.93378 1.73064 1.87624 1.45589 1.93351 1.72810 1.87527 1.45995 1.55938 1.55718 1.51021 1.26234 1.20814 0.93193 0.93174 0.89953 1.21133 0.92049 0.93303 0.99156 1.19601 0.97321 0.95797 0.92583 1.21271 0.94435 0.95384 0.98440 1.21123 0.98226 0.96332 0.97844 1.20887 0.97972 0.99443 0.91437 1.19907 1.04391 1.01550 0.92559 1.18338 0.74259 0.76974 0.85050 1.93207 1.69533 1.57247 1.96170 1.93185 1.36809 1.89232 1.96699 1.93217 1.95323 1.67949 1.59046 1.20821 0.95518 0.93378 0.98959 1.23073 0.95115 1.01954 0.97146 1.22815 0.97290 1.01414 0.96178 1.22970 0.94448 1.01664 0.97066 0.89945 0.76885 0.90329 0.91295 0.84884 0.84823 0.84968 0.84647 0.89854 0.90269 0.89478 0.91375 0.90576 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.81 13.19 55.43 0.73 -24.08 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 7 C -1.02 -27.58 9.72 30.60 0.30 -27.28 16 8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 9 S 2.71 71.20 5.02 -107.50 -0.54 70.66 16 10 O -1.01 -29.69 18.02 -57.17 -1.03 -30.72 16 11 O -1.01 -29.02 17.49 -57.17 -1.00 -30.02 16 12 N -1.13 -21.76 5.69 -10.61 -0.06 -21.82 16 13 C 0.16 2.44 5.48 -4.04 -0.02 2.42 16 14 C -0.06 -0.65 0.63 -154.85 -0.10 -0.75 16 15 C -0.05 -0.66 4.45 -104.63 -0.47 -1.12 16 16 C -0.08 -0.89 9.39 -39.58 -0.37 -1.26 16 17 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 18 C -0.08 -0.89 9.40 -39.58 -0.37 -1.26 16 19 C -0.18 -2.29 5.45 -104.62 -0.57 -2.86 16 20 C 0.51 6.38 3.36 36.01 0.12 6.50 16 21 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 22 F -0.18 -2.27 16.47 2.25 0.04 -2.23 16 23 F -0.17 -2.38 16.46 2.25 0.04 -2.34 16 24 C -0.07 -0.87 8.03 -39.58 -0.32 -1.19 16 25 C -0.14 -1.42 6.14 -25.91 -0.16 -1.58 16 26 C -0.14 -1.29 7.73 -25.92 -0.20 -1.49 16 27 C -0.12 -1.15 6.88 -25.92 -0.18 -1.33 16 28 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.40 6.92 8.15 -34.48 -0.28 6.64 16 30 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 31 H 0.07 1.02 7.30 -51.93 -0.38 0.64 16 32 H 0.13 1.31 8.03 -52.49 -0.42 0.89 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.22 7.61 -52.49 -0.40 0.82 16 35 H 0.14 1.58 6.56 -52.49 -0.34 1.24 16 36 H 0.08 0.78 7.43 -51.93 -0.39 0.39 16 37 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.09 0.84 7.60 -51.93 -0.39 0.44 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -35.16 369.73 -8.73 -43.89 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.66 Total: 7.17 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.83 Total: -29.26 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.67 Total: -45.90 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -2.03 Total: -60.74 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 71.20 SS G_CDS: -0.54 Total: 70.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.16 -8.73 -43.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.818 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds