Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99663 * 2 1 4 4 H 1.48507 * 109.46682 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47126 * 299.99477 * 3 2 1 6 6 H 1.48494 * 109.47288 * 60.00120 * 3 2 1 7 7 C 1.37872 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00095 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99824 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40212 * 66.45813 * 9 7 2 11 11 O 1.42100 * 106.40269 * 293.53767 * 9 7 2 12 12 N 1.65607 * 107.21896 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99578 * 64.99894 * 12 9 7 14 14 C 1.52995 * 109.46637 * 165.21784 * 13 12 9 15 15 C 1.50698 * 112.85510 * 301.11335 * 14 13 12 16 16 C 1.38258 * 119.99772 * 283.13751 * 15 14 13 17 17 C 1.38221 * 119.99784 * 179.97438 * 16 15 14 18 18 C 1.38258 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.38212 * 119.99955 * 359.77093 * 18 17 16 20 20 C 1.50699 * 120.00029 * 180.25356 * 19 18 17 21 21 F 1.39899 * 109.47199 * 270.21472 * 20 19 18 22 22 F 1.39900 * 109.46810 * 30.21141 * 20 19 18 23 23 F 1.39893 * 109.47329 * 150.21061 * 20 19 18 24 24 C 1.38210 * 119.99947 * 103.15578 * 15 14 13 25 25 C 1.53788 * 113.68965 * 72.38379 * 14 13 12 26 26 C 1.53787 * 87.07860 * 89.12486 * 25 14 13 27 27 C 1.53778 * 87.08320 * 25.43173 * 26 25 14 28 28 H 0.97002 * 120.00335 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99943 * 245.00286 * 12 9 7 30 30 H 1.09003 * 109.46774 * 45.22046 * 13 12 9 31 31 H 1.08996 * 109.47338 * 285.22039 * 13 12 9 32 32 H 1.08002 * 120.00229 * 359.97438 * 16 15 14 33 33 H 1.07995 * 119.99861 * 179.97438 * 17 16 15 34 34 H 1.07994 * 119.99685 * 179.97438 * 18 17 16 35 35 H 1.07995 * 120.00203 * 359.97438 * 24 15 14 36 36 H 1.09003 * 113.61210 * 203.66982 * 25 14 13 37 37 H 1.08994 * 113.61352 * 334.57339 * 25 14 13 38 38 H 1.09002 * 113.61308 * 270.87948 * 26 25 14 39 39 H 1.09006 * 113.61217 * 139.98547 * 26 25 14 40 40 H 1.08993 * 113.61296 * 220.01756 * 27 26 25 41 41 H 1.09004 * 113.61063 * 89.11758 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4510 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.1395 -4.1087 1.1505 14 6 3.8090 -5.4823 1.0743 15 6 2.8171 -6.6167 1.0584 16 6 2.1929 -7.0056 2.2291 17 6 1.2828 -8.0458 2.2145 18 6 0.9971 -8.6977 1.0292 19 6 1.6180 -8.3061 -0.1419 20 6 1.3023 -9.0129 -1.4349 21 9 2.1769 -10.0919 -1.6022 22 9 -0.0154 -9.4817 -1.4004 23 9 1.4522 -8.1213 -2.5024 24 6 2.5318 -7.2686 -0.1264 25 6 4.8819 -5.5867 -0.0225 26 6 5.8913 -5.0941 1.0279 27 6 4.9448 -5.6713 2.0936 28 1 -0.4851 0.8400 -0.0004 29 1 2.3173 -4.5324 -0.7608 30 1 2.5616 -4.0367 2.0719 31 1 3.9032 -3.3311 1.1388 32 1 2.4164 -6.4967 3.1551 33 1 0.7955 -8.3499 3.1290 34 1 0.2863 -9.5107 1.0178 35 1 3.0193 -6.9648 -1.0410 36 1 5.0647 -6.6074 -0.3587 37 1 4.7334 -4.8888 -0.8464 38 1 5.9846 -4.0088 1.0685 39 1 6.8550 -5.6011 0.9790 40 1 4.8471 -5.0417 2.9779 41 1 5.1449 -6.7151 2.3359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = -228.336279 kcal Electronic energy + Delta-G solvation = -31479.466947 eV Core-core repulsion = 26648.973761 eV Total energy + Delta-G solvation = -4830.493186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.22115 -48.74491 -48.68299 -41.52692 -39.19968 -37.39016 -36.13197 -35.35899 -35.00821 -33.07878 -32.17927 -28.26413 -28.16608 -27.23241 -26.28567 -24.89359 -23.22422 -22.42463 -21.05758 -19.87831 -19.55779 -19.41809 -19.30009 -18.98101 -18.12040 -17.37240 -17.19520 -16.84443 -16.33784 -16.04539 -15.93915 -15.70522 -15.59059 -15.41724 -15.18455 -15.12790 -14.96556 -14.84798 -14.76573 -14.42005 -14.08011 -13.97457 -13.64493 -13.50841 -13.26475 -13.09244 -13.02297 -12.87184 -12.57552 -12.50906 -12.41188 -12.32128 -12.26518 -12.16424 -11.42374 -11.27384 -11.25963 -11.09605 -10.94882 -10.20538 -10.11497 -9.79104 -8.74795 -7.47929 -0.04721 0.26877 0.37136 1.34476 1.35610 1.53106 1.61540 2.21669 2.48264 2.58980 2.67766 2.96647 2.98251 3.37932 3.51986 3.56742 3.74565 3.79792 3.88582 3.92414 4.03826 4.09875 4.26664 4.45315 4.48168 4.56395 4.65022 4.71235 4.79044 4.90737 4.91312 4.99980 5.09532 5.13340 5.19330 5.21517 5.30155 5.31802 5.40286 5.51815 5.60819 5.81562 5.91296 6.35328 6.79138 8.21871 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.003464 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.476883 B = 8081.699430 C = 9038.473133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.243 1.243 5 H -0.263 1.263 6 H -0.259 1.259 7 C -1.037 5.037 8 H 0.124 0.876 9 S 2.719 3.281 10 O -1.050 7.050 11 O -1.042 7.042 12 N -1.118 6.118 13 C 0.147 3.853 14 C -0.057 4.057 15 C -0.066 4.066 16 C -0.087 4.087 17 C -0.117 4.117 18 C -0.084 4.084 19 C -0.198 4.198 20 C 0.509 3.491 21 F -0.177 7.177 22 F -0.180 7.180 23 F -0.184 7.184 24 C -0.083 4.083 25 C -0.136 4.136 26 C -0.135 4.135 27 C -0.111 4.111 28 H 0.298 0.702 29 H 0.410 0.590 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.960 -16.530 4.790 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.166 1.166 5 H -0.187 1.187 6 H -0.183 1.183 7 C -1.171 5.171 8 H 0.142 0.858 9 S 2.820 3.180 10 O -1.040 7.040 11 O -1.032 7.032 12 N -0.877 5.877 13 C 0.021 3.979 14 C -0.059 4.059 15 C -0.066 4.066 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.102 4.102 19 C -0.199 4.199 20 C 0.455 3.545 21 F -0.158 7.158 22 F -0.161 7.161 23 F -0.165 7.165 24 C -0.101 4.101 25 C -0.174 4.174 26 C -0.172 4.172 27 C -0.149 4.149 28 H 0.108 0.892 29 H 0.243 0.757 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.808 -16.513 4.925 20.340 hybrid contribution 0.094 0.735 -0.966 1.217 sum 10.902 -15.778 3.959 19.582 Atomic orbital electron populations 1.70007 1.08897 1.32256 1.41591 1.26045 0.95338 1.05496 0.87532 0.85087 0.79692 0.75029 0.79257 1.16605 1.18723 1.18321 1.30918 1.07312 1.12352 1.66512 0.85791 0.99882 0.72650 0.74036 0.71428 1.93310 1.75080 1.88481 1.47112 1.93297 1.74503 1.88280 1.47087 1.55285 1.55149 1.49448 1.27855 1.21090 0.92726 0.96259 0.87845 1.21066 0.92491 0.90763 1.01567 1.19735 0.97877 0.96117 0.92853 1.21590 0.94426 0.95682 0.98815 1.21487 0.97667 0.95614 0.98694 1.21194 0.97934 0.99875 0.91225 1.20030 1.05041 1.01976 0.92848 1.18387 0.74188 0.76940 0.84971 1.93208 1.69393 1.57061 1.96162 1.93176 1.37005 1.89249 1.96699 1.93194 1.95377 1.68350 1.59599 1.20946 0.96005 0.93839 0.99320 1.23116 0.94981 1.02516 0.96747 1.22813 0.97852 1.01351 0.95217 1.22968 0.92456 1.02809 0.96683 0.89172 0.75694 0.91432 0.90204 0.83400 0.82050 0.83249 0.84504 0.88641 0.91436 0.89883 0.89585 0.89891 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.53 13.19 21.45 0.28 -53.25 16 2 C 0.07 3.77 5.46 84.65 0.46 4.24 16 3 Si 0.99 40.57 29.54 68.60 2.03 42.60 16 4 H -0.24 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -1.04 -56.02 9.72 67.73 0.66 -55.37 16 8 H 0.12 5.91 7.81 -2.91 -0.02 5.89 16 9 S 2.72 145.79 5.02 -56.49 -0.28 145.50 16 10 O -1.05 -64.01 18.02 -128.00 -2.31 -66.32 16 11 O -1.04 -61.74 17.49 -128.00 -2.24 -63.98 16 12 N -1.12 -43.18 5.69 -187.49 -1.07 -44.24 16 13 C 0.15 4.50 5.48 86.38 0.47 4.97 16 14 C -0.06 -1.28 0.63 -52.40 -0.03 -1.31 16 15 C -0.07 -1.56 4.45 -19.87 -0.09 -1.64 16 16 C -0.09 -1.87 9.39 22.27 0.21 -1.66 16 17 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 18 C -0.08 -1.78 9.40 22.27 0.21 -1.57 16 19 C -0.20 -4.84 5.45 -19.87 -0.11 -4.95 16 20 C 0.51 12.67 3.36 71.24 0.24 12.91 16 21 F -0.18 -4.15 17.30 44.97 0.78 -3.37 16 22 F -0.18 -4.52 16.47 44.97 0.74 -3.78 16 23 F -0.18 -5.09 16.46 44.97 0.74 -4.35 16 24 C -0.08 -2.06 8.03 22.27 0.18 -1.88 16 25 C -0.14 -2.62 6.14 31.12 0.19 -2.43 16 26 C -0.14 -2.14 7.73 31.12 0.24 -1.90 16 27 C -0.11 -1.77 6.88 31.12 0.21 -1.56 16 28 H 0.30 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.41 14.35 8.15 -96.74 -0.79 13.57 16 30 H 0.07 2.22 7.76 -2.39 -0.02 2.20 16 31 H 0.08 2.26 7.30 -2.39 -0.02 2.24 16 32 H 0.15 2.62 8.03 -2.91 -0.02 2.59 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.15 2.52 7.61 -2.91 -0.02 2.50 16 35 H 0.14 3.20 6.56 -2.91 -0.02 3.18 16 36 H 0.10 1.61 7.43 -2.39 -0.02 1.59 16 37 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.08 1.39 7.60 -2.39 -0.02 1.38 16 39 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.10 1.33 8.09 -2.38 -0.02 1.31 16 Total: -1.00 -77.26 369.73 2.04 -75.22 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.30 Total: 30.14 kcal Atomic # 6 Polarization: -57.24 SS G_CDS: 3.07 Total: -54.17 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -0.78 Total: -97.49 kcal Atomic # 8 Polarization: -125.75 SS G_CDS: -4.55 Total: -130.29 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 2.26 Total: -11.50 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 145.79 SS G_CDS: -0.28 Total: 145.50 kcal Total: -77.26 2.04 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.118 kcal (2) G-P(sol) polarization free energy of solvation -77.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds