Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.77624 * 2 1 4 4 C 1.55157 * 110.72057 * 123.24253 * 2 1 3 5 5 C 1.54906 * 101.57850 * 153.86147 * 4 2 1 6 6 N 1.47425 * 104.83815 * 322.99441 * 5 4 2 7 7 S 1.65595 * 125.65288 * 204.15110 * 6 5 4 8 8 O 1.42098 * 106.40058 * 23.50845 * 7 6 5 9 9 O 1.42094 * 106.40411 * 156.43066 * 7 6 5 10 10 C 1.76203 * 107.21724 * 269.97015 * 7 6 5 11 11 H 1.08003 * 119.99855 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99867 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00081 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99732 * 180.02562 * 12 10 7 15 15 H 1.48493 * 109.47370 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47392 * 120.00268 * 14 12 10 17 17 H 1.48506 * 109.46728 * 239.99754 * 14 12 10 18 18 C 1.47027 * 108.70078 * 24.12301 * 6 5 4 19 19 H 1.09002 * 109.88429 * 239.52845 * 18 6 5 20 20 C 1.50701 * 110.01033 * 118.43296 * 18 6 5 21 21 C 1.38231 * 119.99942 * 321.52942 * 20 18 6 22 22 C 1.38240 * 119.99838 * 179.76174 * 21 20 18 23 23 C 1.38233 * 120.00121 * 0.49251 * 22 21 20 24 24 C 1.50694 * 120.00257 * 179.76866 * 23 22 21 25 25 F 1.39900 * 109.46946 * 270.01470 * 24 23 22 26 26 F 1.39904 * 109.47409 * 30.01385 * 24 23 22 27 27 F 1.39901 * 109.47585 * 150.01303 * 24 23 22 28 28 C 1.38234 * 119.99842 * 359.77835 * 23 22 21 29 29 C 1.38232 * 120.00036 * 141.79948 * 20 18 6 30 30 H 1.09003 * 109.47075 * 183.23873 * 1 2 3 31 31 H 1.09008 * 109.46973 * 303.23027 * 1 2 3 32 32 H 1.08995 * 109.47564 * 63.23186 * 1 2 3 33 33 H 1.08994 * 111.00482 * 271.93478 * 4 2 1 34 34 H 1.09001 * 111.00219 * 35.79575 * 4 2 1 35 35 H 1.09009 * 110.36647 * 81.82643 * 5 4 2 36 36 H 1.09001 * 110.37236 * 204.04057 * 5 4 2 37 37 H 0.97005 * 119.99522 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00538 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.99591 * 180.24631 * 22 21 20 40 40 H 1.08003 * 119.99939 * 179.97438 * 28 23 22 41 41 H 1.08002 * 119.99966 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7955 1.2137 5 6 3.4633 -1.2499 0.6873 6 7 3.2445 -1.5506 -0.7392 7 16 4.1624 -2.5749 -1.6615 8 8 4.7856 -3.4780 -0.7586 9 8 3.3347 -2.9977 -2.7363 10 6 5.4554 -1.6152 -2.3770 11 1 5.5213 -0.5574 -2.1689 12 6 6.3829 -2.2146 -3.2024 13 7 6.3029 -3.5027 -3.4553 14 14 7.7541 -1.1972 -3.9604 15 1 7.6228 0.2154 -3.5219 16 1 9.0680 -1.7322 -3.5216 17 1 7.6611 -1.2662 -5.4409 18 6 2.0759 -0.7911 -1.2074 19 1 1.3128 -1.4757 -1.5777 20 6 2.4845 0.1612 -2.3016 21 6 3.6950 0.8241 -2.2247 22 6 4.0719 1.6939 -3.2309 23 6 3.2338 1.9084 -4.3090 24 6 3.6423 2.8605 -5.4033 25 9 3.1902 4.1478 -5.0942 26 9 5.0367 2.8706 -5.5162 27 9 3.0794 2.4471 -6.6155 28 6 2.0207 1.2497 -4.3832 29 6 1.6461 0.3760 -3.3796 30 1 -0.3633 -1.0261 0.0581 31 1 -0.3633 0.5632 0.8597 32 1 -0.3634 0.4628 -0.9175 33 1 2.1851 -0.1520 2.0870 34 1 1.4453 -1.6537 1.4373 35 1 4.1932 -0.4479 0.7982 36 1 3.7970 -2.1416 1.2179 37 1 6.9554 -3.9242 -4.0364 38 1 4.3479 0.6600 -1.3801 39 1 5.0195 2.2088 -3.1727 40 1 1.3657 1.4177 -5.2253 41 1 0.6982 -0.1384 -3.4373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = -217.010165 kcal Electronic energy + Delta-G solvation = -32386.560805 eV Core-core repulsion = 27556.558757 eV Total energy + Delta-G solvation = -4830.002048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.03920 -47.54236 -47.51620 -39.88294 -37.88727 -35.29722 -34.00461 -33.12845 -32.35049 -32.23163 -30.84846 -28.89186 -26.58652 -26.13928 -24.61624 -22.78441 -22.08648 -21.19703 -20.05119 -18.80397 -18.38274 -18.25543 -18.22804 -17.46440 -16.48452 -16.13950 -15.19337 -14.95032 -14.75896 -14.55225 -14.36389 -14.19009 -14.07369 -13.96182 -13.76932 -13.75360 -13.66657 -13.63906 -13.38777 -13.18668 -12.81925 -12.62270 -12.52356 -12.20405 -12.02668 -11.73187 -11.52218 -11.25592 -11.23943 -10.95967 -10.79458 -10.67638 -10.57133 -10.54370 -10.37873 -10.32444 -10.19321 -9.26876 -9.01706 -8.77448 -8.72128 -8.23956 -6.71494 -5.32460 1.12614 1.55878 2.16485 2.80302 3.04857 3.14138 3.19176 3.66864 3.87269 4.04248 4.17368 4.50041 4.56711 4.58741 4.66897 4.72501 4.97350 5.04357 5.07122 5.16317 5.46491 5.49282 5.54188 5.58123 5.63298 5.69929 5.79835 5.88024 5.94367 5.99578 6.01240 6.11019 6.16111 6.21074 6.24970 6.37369 6.42699 6.46082 6.63214 6.92281 7.00857 7.32025 7.39774 7.95055 8.88425 10.22520 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.005830 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.783286 B = 4801.344891 C = 7173.203007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.117 3.883 6 N -1.015 6.015 7 S 2.721 3.279 8 O -1.002 7.002 9 O -0.997 6.997 10 C -1.016 5.016 11 H 0.108 0.892 12 C 0.137 3.863 13 N -0.846 5.846 14 Si 0.911 3.089 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.195 3.805 19 H 0.086 0.914 20 C -0.065 4.065 21 C -0.083 4.083 22 C -0.070 4.070 23 C -0.188 4.188 24 C 0.509 3.491 25 F -0.182 7.182 26 F -0.178 7.178 27 F -0.179 7.179 28 C -0.076 4.076 29 C -0.103 4.103 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.290 0.710 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 12.484 3.924 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.104 0.896 4 C -0.165 4.165 5 C -0.009 4.009 6 N -0.849 5.849 7 S 2.823 3.177 8 O -0.993 6.993 9 O -0.988 6.988 10 C -1.149 5.149 11 H 0.126 0.874 12 C -0.081 4.081 13 N -0.476 5.476 14 Si 0.735 3.265 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.195 1.195 18 C 0.087 3.913 19 H 0.104 0.896 20 C -0.066 4.066 21 C -0.101 4.101 22 C -0.088 4.088 23 C -0.189 4.189 24 C 0.455 3.545 25 F -0.163 7.163 26 F -0.159 7.159 27 F -0.161 7.161 28 C -0.095 4.095 29 C -0.121 4.121 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.403 11.319 3.682 15.169 hybrid contribution 1.374 1.106 -0.972 2.014 sum -8.029 12.425 2.710 15.040 Atomic orbital electron populations 1.21776 0.94103 1.02197 1.01926 1.22282 0.95964 0.99423 0.93626 0.89634 1.22881 0.96625 0.99899 0.97046 1.21884 0.96576 1.00799 0.81609 1.59372 1.42605 1.62910 1.20019 1.00367 0.73266 0.72321 0.71750 1.93358 1.76674 1.62554 1.66664 1.93360 1.70321 1.80887 1.54190 1.30738 1.30837 1.09534 1.43807 0.87404 1.24682 0.96747 0.94477 0.92145 1.69901 1.35383 1.10108 1.32214 0.86264 0.80140 0.80816 0.79311 1.18312 1.19597 1.19533 1.20166 0.88430 0.90915 0.91754 0.89578 1.20525 0.94541 0.95840 0.95716 1.21040 0.95615 0.94308 0.99153 1.20842 0.98239 0.97364 0.92341 1.19858 0.99232 1.02929 0.96909 1.18386 0.74695 0.79679 0.81775 1.93194 1.89007 1.41152 1.92970 1.93195 1.29850 1.96542 1.96311 1.93173 1.85024 1.90152 1.47713 1.20764 0.94571 0.95388 0.98739 1.20902 1.00252 0.97898 0.93052 0.92226 0.92307 0.92286 0.90370 0.90647 0.92149 0.90122 0.89967 0.84316 0.85096 0.85080 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.14 37.16 0.34 -0.97 16 2 C -0.09 -1.07 3.06 -88.78 -0.27 -1.34 16 3 H 0.09 0.92 7.81 -51.93 -0.41 0.52 16 4 C -0.13 -1.41 6.53 -24.58 -0.16 -1.57 16 5 C 0.12 1.78 7.10 -2.53 -0.02 1.76 16 6 N -1.02 -19.42 2.63 -105.63 -0.28 -19.69 16 7 S 2.72 70.89 4.90 -107.50 -0.53 70.37 16 8 O -1.00 -28.99 17.34 -57.17 -0.99 -29.98 16 9 O -1.00 -28.69 17.60 -57.17 -1.01 -29.70 16 10 C -1.02 -26.87 8.81 30.60 0.27 -26.60 16 11 H 0.11 2.55 4.94 -52.48 -0.26 2.29 16 12 C 0.14 3.78 5.46 -17.82 -0.10 3.68 16 13 N -0.85 -24.77 13.19 55.43 0.73 -24.04 16 14 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 15 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.19 3.08 2.62 -68.10 -0.18 2.90 16 19 H 0.09 1.37 7.71 -51.93 -0.40 0.97 16 20 C -0.06 -1.05 4.57 -104.63 -0.48 -1.53 16 21 C -0.08 -1.39 6.77 -39.58 -0.27 -1.65 16 22 C -0.07 -1.12 9.40 -39.58 -0.37 -1.50 16 23 C -0.19 -2.91 5.45 -104.63 -0.57 -3.48 16 24 C 0.51 7.48 3.36 36.00 0.12 7.60 16 25 F -0.18 -2.49 17.30 2.25 0.04 -2.46 16 26 F -0.18 -2.80 16.46 2.25 0.04 -2.76 16 27 F -0.18 -2.63 16.46 2.25 0.04 -2.59 16 28 C -0.08 -1.10 9.40 -39.58 -0.37 -1.47 16 29 C -0.10 -1.52 9.68 -39.58 -0.38 -1.90 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 35 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 36 H 0.08 1.29 7.78 -51.93 -0.40 0.88 16 37 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.14 2.26 6.62 -52.48 -0.35 1.91 16 39 H 0.13 1.94 7.61 -52.48 -0.40 1.54 16 40 H 0.13 1.57 7.60 -52.48 -0.40 1.17 16 41 H 0.13 1.62 8.05 -52.49 -0.42 1.20 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -34.38 363.24 -8.64 -43.02 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.70 Total: 2.81 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -2.44 Total: -26.07 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.45 Total: -43.73 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -2.00 Total: -59.68 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.11 Total: -7.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 70.89 SS G_CDS: -0.53 Total: 70.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.38 -8.64 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.987 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds