Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.77624 * 2 1 4 4 C 1.55157 * 110.72057 * 123.24253 * 2 1 3 5 5 C 1.54906 * 101.57850 * 153.86147 * 4 2 1 6 6 N 1.47425 * 104.83815 * 322.99441 * 5 4 2 7 7 S 1.65595 * 125.65288 * 204.15110 * 6 5 4 8 8 O 1.42098 * 106.40058 * 23.50845 * 7 6 5 9 9 O 1.42094 * 106.40411 * 156.43066 * 7 6 5 10 10 C 1.76203 * 107.21724 * 269.97015 * 7 6 5 11 11 H 1.08003 * 119.99855 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99867 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00081 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99732 * 180.02562 * 12 10 7 15 15 H 1.48493 * 109.47370 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47392 * 120.00268 * 14 12 10 17 17 H 1.48506 * 109.46728 * 239.99754 * 14 12 10 18 18 C 1.47027 * 108.70078 * 24.12301 * 6 5 4 19 19 H 1.09002 * 109.88429 * 239.52845 * 18 6 5 20 20 C 1.50701 * 110.01033 * 118.43296 * 18 6 5 21 21 C 1.38231 * 119.99942 * 321.52942 * 20 18 6 22 22 C 1.38240 * 119.99838 * 179.76174 * 21 20 18 23 23 C 1.38233 * 120.00121 * 0.49251 * 22 21 20 24 24 C 1.50694 * 120.00257 * 179.76866 * 23 22 21 25 25 F 1.39900 * 109.46946 * 270.01470 * 24 23 22 26 26 F 1.39904 * 109.47409 * 30.01385 * 24 23 22 27 27 F 1.39901 * 109.47585 * 150.01303 * 24 23 22 28 28 C 1.38234 * 119.99842 * 359.77835 * 23 22 21 29 29 C 1.38232 * 120.00036 * 141.79948 * 20 18 6 30 30 H 1.09003 * 109.47075 * 183.23873 * 1 2 3 31 31 H 1.09008 * 109.46973 * 303.23027 * 1 2 3 32 32 H 1.08995 * 109.47564 * 63.23186 * 1 2 3 33 33 H 1.08994 * 111.00482 * 271.93478 * 4 2 1 34 34 H 1.09001 * 111.00219 * 35.79575 * 4 2 1 35 35 H 1.09009 * 110.36647 * 81.82643 * 5 4 2 36 36 H 1.09001 * 110.37236 * 204.04057 * 5 4 2 37 37 H 0.97005 * 119.99522 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00538 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.99591 * 180.24631 * 22 21 20 40 40 H 1.08003 * 119.99939 * 179.97438 * 28 23 22 41 41 H 1.08002 * 119.99966 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7955 1.2137 5 6 3.4633 -1.2499 0.6873 6 7 3.2445 -1.5506 -0.7392 7 16 4.1624 -2.5749 -1.6615 8 8 4.7856 -3.4780 -0.7586 9 8 3.3347 -2.9977 -2.7363 10 6 5.4554 -1.6152 -2.3770 11 1 5.5213 -0.5574 -2.1689 12 6 6.3829 -2.2146 -3.2024 13 7 6.3029 -3.5027 -3.4553 14 14 7.7541 -1.1972 -3.9604 15 1 7.6228 0.2154 -3.5219 16 1 9.0680 -1.7322 -3.5216 17 1 7.6611 -1.2662 -5.4409 18 6 2.0759 -0.7911 -1.2074 19 1 1.3128 -1.4757 -1.5777 20 6 2.4845 0.1612 -2.3016 21 6 3.6950 0.8241 -2.2247 22 6 4.0719 1.6939 -3.2309 23 6 3.2338 1.9084 -4.3090 24 6 3.6423 2.8605 -5.4033 25 9 3.1902 4.1478 -5.0942 26 9 5.0367 2.8706 -5.5162 27 9 3.0794 2.4471 -6.6155 28 6 2.0207 1.2497 -4.3832 29 6 1.6461 0.3760 -3.3796 30 1 -0.3633 -1.0261 0.0581 31 1 -0.3633 0.5632 0.8597 32 1 -0.3634 0.4628 -0.9175 33 1 2.1851 -0.1520 2.0870 34 1 1.4453 -1.6537 1.4373 35 1 4.1932 -0.4479 0.7982 36 1 3.7970 -2.1416 1.2179 37 1 6.9554 -3.9242 -4.0364 38 1 4.3479 0.6600 -1.3801 39 1 5.0195 2.2088 -3.1727 40 1 1.3657 1.4177 -5.2253 41 1 0.6982 -0.1384 -3.4373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -239.237111 kcal Electronic energy + Delta-G solvation = -32387.524638 eV Core-core repulsion = 27556.558757 eV Total energy + Delta-G solvation = -4830.965881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.19486 -48.71723 -48.65035 -41.06276 -39.04720 -37.43918 -36.15894 -35.19099 -33.53146 -33.35678 -32.03506 -30.03681 -28.26240 -27.63834 -25.72165 -23.97552 -23.28693 -22.38215 -21.17117 -20.64068 -19.53818 -19.46638 -19.44848 -19.10684 -18.29505 -17.50213 -16.93416 -16.47500 -15.98019 -15.92049 -15.82178 -15.51205 -15.42772 -15.35979 -15.12481 -14.90921 -14.82146 -14.71983 -14.53516 -14.36324 -14.13843 -13.98485 -13.78067 -13.57990 -13.34985 -13.15290 -13.07255 -12.71226 -12.66744 -12.51923 -12.46283 -12.32254 -12.16733 -12.02197 -11.79546 -11.60782 -11.43169 -11.28539 -10.95416 -10.07041 -9.93754 -9.69526 -8.75121 -7.44576 -0.08797 0.27275 0.37111 1.27202 1.30384 1.44958 1.63981 2.16416 2.46370 2.58157 2.70889 2.93472 3.01227 3.41869 3.53817 3.61624 3.74081 3.88149 3.91933 3.95034 4.13970 4.33213 4.40313 4.42471 4.54904 4.60076 4.67244 4.71940 4.83690 4.90335 4.96599 5.05599 5.12741 5.17289 5.19253 5.23452 5.27523 5.35700 5.40234 5.51398 5.66106 5.80989 5.86980 5.95180 6.80544 8.20453 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.005830 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.783286 B = 4801.344891 C = 7173.203007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.098 0.902 4 C -0.113 4.113 5 C 0.102 3.898 6 N -1.016 6.016 7 S 2.725 3.275 8 O -1.045 7.045 9 O -1.037 7.037 10 C -1.024 5.024 11 H 0.130 0.870 12 C 0.079 3.921 13 N -0.897 5.897 14 Si 0.968 3.032 15 H -0.239 1.239 16 H -0.259 1.259 17 H -0.266 1.266 18 C 0.185 3.815 19 H 0.079 0.921 20 C -0.079 4.079 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.198 4.198 24 C 0.514 3.486 25 F -0.175 7.175 26 F -0.184 7.184 27 F -0.179 7.179 28 C -0.075 4.075 29 C -0.110 4.110 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.296 0.704 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 15.113 4.457 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.116 0.884 4 C -0.152 4.152 5 C -0.023 4.023 6 N -0.853 5.853 7 S 2.829 3.171 8 O -1.035 7.035 9 O -1.027 7.027 10 C -1.158 5.158 11 H 0.148 0.852 12 C -0.134 4.134 13 N -0.529 5.529 14 Si 0.787 3.213 15 H -0.161 1.161 16 H -0.183 1.183 17 H -0.191 1.191 18 C 0.079 3.921 19 H 0.097 0.903 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.200 4.200 24 C 0.460 3.540 25 F -0.156 7.156 26 F -0.166 7.166 27 F -0.160 7.160 28 C -0.093 4.093 29 C -0.128 4.128 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.174 0.826 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.302 13.946 4.229 17.847 hybrid contribution 1.558 0.314 -1.095 1.930 sum -8.744 14.261 3.134 17.019 Atomic orbital electron populations 1.21781 0.92005 1.02617 1.03312 1.22299 0.97488 0.99129 0.91206 0.88409 1.22901 0.93661 1.00619 0.97990 1.22262 0.99872 1.00820 0.79298 1.58734 1.42832 1.62456 1.21269 0.99728 0.73286 0.72756 0.71321 1.93293 1.77853 1.64922 1.67459 1.93293 1.71049 1.82306 1.56089 1.31091 1.30728 1.10679 1.43321 0.85212 1.25810 0.99484 0.95454 0.92605 1.70003 1.37022 1.12159 1.33732 0.85405 0.77211 0.80199 0.78496 1.16093 1.18337 1.19118 1.20529 0.86864 0.90949 0.93792 0.90331 1.20696 0.94910 0.96011 0.96398 1.21094 0.96031 0.95142 0.99555 1.21010 0.98855 0.97522 0.92528 1.20029 0.99633 1.03320 0.96983 1.18250 0.74361 0.79806 0.81558 1.93207 1.88871 1.40626 1.92910 1.93180 1.30448 1.96590 1.96333 1.93174 1.84968 1.90196 1.47665 1.21095 0.94515 0.94510 0.99206 1.21231 1.01068 0.97938 0.92549 0.92456 0.89954 0.91777 0.86732 0.90261 0.90583 0.91683 0.89393 0.84603 0.84251 0.82648 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.14 71.98 0.66 -1.44 16 2 C -0.08 -1.64 3.06 -9.60 -0.03 -1.67 16 3 H 0.10 1.78 7.81 -2.39 -0.02 1.76 16 4 C -0.11 -2.22 6.53 31.99 0.21 -2.01 16 5 C 0.10 3.02 7.10 86.85 0.62 3.64 16 6 N -1.02 -38.89 2.63 -488.10 -1.28 -40.18 16 7 S 2.72 146.10 4.90 -56.49 -0.28 145.83 16 8 O -1.04 -62.97 17.34 -128.00 -2.22 -65.19 16 9 O -1.04 -61.84 17.60 -128.00 -2.25 -64.10 16 10 C -1.02 -54.76 8.81 67.73 0.60 -54.16 16 11 H 0.13 6.11 4.94 -2.91 -0.01 6.10 16 12 C 0.08 4.39 5.46 84.65 0.46 4.86 16 13 N -0.90 -54.01 13.19 21.45 0.28 -53.73 16 14 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 15 H -0.24 -9.36 7.11 99.48 0.71 -8.65 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 C 0.18 5.67 2.62 44.59 0.12 5.78 16 19 H 0.08 2.48 7.71 -2.39 -0.02 2.47 16 20 C -0.08 -2.47 4.57 -19.87 -0.09 -2.56 16 21 C -0.10 -3.24 6.77 22.27 0.15 -3.09 16 22 C -0.08 -2.51 9.40 22.27 0.21 -2.30 16 23 C -0.20 -5.81 5.45 -19.87 -0.11 -5.92 16 24 C 0.51 14.17 3.36 71.23 0.24 14.41 16 25 F -0.17 -4.44 17.30 44.97 0.78 -3.66 16 26 F -0.18 -5.48 16.46 44.97 0.74 -4.74 16 27 F -0.18 -4.90 16.46 44.97 0.74 -4.16 16 28 C -0.08 -2.03 9.40 22.27 0.21 -1.82 16 29 C -0.11 -3.07 9.68 22.27 0.22 -2.85 16 30 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.52 8.02 -2.39 -0.02 1.50 16 35 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.06 2.10 7.78 -2.39 -0.02 2.08 16 37 H 0.30 16.13 8.31 -92.70 -0.77 15.36 16 38 H 0.14 4.33 6.62 -2.91 -0.02 4.31 16 39 H 0.14 3.92 7.61 -2.91 -0.02 3.90 16 40 H 0.16 3.32 7.60 -2.91 -0.02 3.29 16 41 H 0.15 3.49 8.05 -2.91 -0.02 3.47 16 Total: -1.00 -77.07 363.24 3.07 -74.00 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 1.08 Total: 21.29 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 3.46 Total: -49.13 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -1.00 Total: -93.91 kcal Atomic # 8 Polarization: -124.81 SS G_CDS: -4.47 Total: -129.28 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 2.26 Total: -12.56 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 146.10 SS G_CDS: -0.28 Total: 145.83 kcal Total: -77.07 3.07 -74.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.234 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds