Wall clock time and date at job start Tue Mar 31 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35888 * 116.99651 * 2 1 4 4 C 1.38745 * 119.93554 * 359.97438 * 3 2 1 5 5 C 1.37892 * 120.14200 * 179.74203 * 4 3 2 6 6 C 1.39604 * 120.00898 * 0.55471 * 5 4 3 7 7 C 1.47795 * 120.06634 * 179.72272 * 6 5 4 8 8 N 1.31072 * 125.09723 * 179.97438 * 7 6 5 9 9 C 1.35619 * 109.56259 * 180.14392 * 8 7 6 10 10 C 1.39564 * 133.30028 * 179.90970 * 9 8 7 11 11 C 1.39154 * 119.50422 * 179.70807 * 10 9 8 12 12 C 1.43200 * 119.90383 * 179.97438 * 11 10 9 13 13 N 9.43688 * 160.79292 * 0.31768 * 5 1 2 14 14 C 1.40162 * 120.18892 * 359.96184 * 11 10 9 15 15 C 1.36491 * 120.46230 * 0.03820 * 14 11 10 16 16 C 1.39008 * 120.18314 * 359.97438 * 15 14 11 17 17 N 1.36941 * 125.10542 * 359.72332 * 7 6 5 18 18 H 0.97005 * 126.36132 * 0.03775 * 17 7 6 19 19 C 1.39608 * 119.86119 * 359.44307 * 6 5 4 20 20 C 1.38236 * 119.85889 * 0.28366 * 19 6 5 21 21 O 1.35998 * 120.00427 * 179.97438 * 20 19 6 22 22 C 1.42902 * 116.99803 * 359.97438 * 21 20 19 23 23 C 1.53002 * 109.46921 * 179.97438 * 22 21 20 24 24 C 1.50693 * 109.47307 * 179.97438 * 23 22 21 25 25 H 1.08006 * 119.99943 * 0.02562 * 24 23 22 26 26 C 1.37879 * 120.00127 * 180.02562 * 24 23 22 27 27 N 1.31515 * 119.99942 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99854 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47263 * 59.99970 * 28 26 24 30 30 H 1.48502 * 109.47043 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47082 * 299.99446 * 28 26 24 32 32 H 1.09006 * 109.46712 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47387 * 299.99742 * 1 2 3 34 34 H 1.09002 * 109.47222 * 59.99945 * 1 2 3 35 35 H 1.07993 * 119.92769 * 0.04123 * 4 3 2 36 36 H 1.08003 * 119.99464 * 180.29743 * 5 4 3 37 37 H 1.07991 * 120.24926 * 359.67106 * 10 9 8 38 38 H 1.07996 * 119.76981 * 180.02562 * 14 11 10 39 39 H 1.07996 * 119.90597 * 179.97438 * 15 14 11 40 40 H 1.07997 * 120.07286 * 180.29308 * 19 6 5 41 41 H 1.08998 * 109.46723 * 299.99581 * 22 21 20 42 42 H 1.08994 * 109.47362 * 59.99691 * 22 21 20 43 43 H 1.08996 * 109.47095 * 300.00368 * 23 22 21 44 44 H 1.09003 * 109.46677 * 59.99725 * 23 22 21 45 45 H 0.97001 * 119.99634 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2889 2.3735 -0.0005 5 6 1.9104 3.6044 0.0048 6 6 3.3042 3.6829 -0.0009 7 6 3.9716 5.0015 -0.0013 8 7 5.2687 5.1897 -0.0060 9 6 5.5348 6.5195 -0.0017 10 6 6.7185 7.2588 -0.0020 11 6 6.6581 8.6491 -0.0028 12 6 7.8674 9.4161 -0.0025 13 7 8.8267 10.0246 -0.0038 14 6 5.4172 9.3007 -0.0040 15 6 4.2576 8.5808 -0.0037 16 6 4.2976 7.1913 -0.0027 17 7 3.3277 6.2101 -0.0019 18 1 2.3678 6.3503 -0.0015 19 6 4.0662 2.5131 -0.0003 20 6 3.4374 1.2821 0.0001 21 8 4.1768 0.1407 0.0001 22 6 5.5982 0.2885 -0.0007 23 6 6.2547 -1.0935 0.0002 24 6 7.7535 -0.9377 -0.0014 25 1 8.1939 0.0485 -0.0024 26 6 8.5627 -2.0540 -0.0014 27 7 8.0264 -3.2549 0.0003 28 14 10.4207 -1.8608 -0.0026 29 1 10.8414 -1.1129 1.2094 30 1 11.0579 -3.2022 -0.0019 31 1 10.8399 -1.1138 -1.2157 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 0.2105 2.3144 -0.0003 36 1 1.3187 4.5080 0.0093 37 1 7.6741 6.7558 -0.0010 38 1 5.3783 10.3799 -0.0051 39 1 3.3064 9.0921 -0.0043 40 1 5.1447 2.5698 0.0001 41 1 5.9058 0.8368 -0.8911 42 1 5.9069 0.8376 0.8888 43 1 5.9468 -1.6414 0.8907 44 1 5.9459 -1.6429 -0.8892 45 1 8.5958 -4.0402 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:22 Heat of formation + Delta-G solvation = 48.382469 kcal Electronic energy + Delta-G solvation = -29925.673664 eV Core-core repulsion = 25681.718538 eV Total energy + Delta-G solvation = -4243.955126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51260 -40.47004 -38.51751 -38.27474 -36.93646 -36.14192 -33.67804 -33.35516 -31.53751 -30.90436 -30.59930 -29.56967 -29.00821 -27.41404 -25.15620 -24.29920 -23.64586 -22.60986 -22.18961 -21.16840 -20.59834 -19.13009 -18.86849 -18.18057 -17.40327 -16.70279 -16.29669 -16.04217 -15.81152 -15.69916 -15.41614 -15.07333 -14.79399 -14.68241 -14.55539 -14.43050 -14.10431 -14.07748 -13.99387 -13.09612 -12.98389 -12.96280 -12.69642 -12.40713 -12.25928 -12.08391 -12.02565 -11.94154 -11.59728 -11.32125 -11.31689 -11.06175 -10.86794 -10.85014 -10.56659 -10.33376 -9.86167 -9.63465 -9.26497 -9.21260 -8.74467 -8.44673 -8.38704 -7.63850 -6.05585 -4.09896 0.20247 0.52720 1.16121 1.27369 2.35120 2.39514 2.45914 2.79615 3.18924 3.33718 3.37511 3.39485 3.41923 3.54597 3.65736 3.71249 3.84833 4.09026 4.44275 4.52095 4.54673 4.70479 4.81669 4.84422 4.86775 4.93586 5.02083 5.07119 5.16568 5.24859 5.30957 5.37251 5.48811 5.60135 5.78507 5.82069 5.85679 5.94435 5.99951 6.06702 6.10354 6.15582 6.30616 6.51908 6.70528 6.86447 7.13536 7.22252 7.49217 7.54124 7.68550 7.82260 8.04153 8.28336 8.95697 9.54310 11.05913 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.005914 B = 0.002762 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4733.545638 B =10134.849076 C =14842.644234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.114 3.886 4 C -0.177 4.177 5 C -0.106 4.106 6 C -0.040 4.040 7 C 0.350 3.650 8 N -0.471 5.471 9 C 0.050 3.950 10 C -0.002 4.002 11 C -0.041 4.041 12 C 0.262 3.738 13 N -0.420 5.420 14 C -0.062 4.062 15 C -0.107 4.107 16 C 0.073 3.927 17 N -0.594 5.594 18 H 0.425 0.575 19 C -0.127 4.127 20 C 0.121 3.879 21 O -0.300 6.300 22 C 0.061 3.939 23 C 0.027 3.973 24 C -0.526 4.526 25 H 0.059 0.941 26 C 0.061 3.939 27 N -0.890 5.890 28 Si 0.898 3.102 29 H -0.275 1.275 30 H -0.286 1.286 31 H -0.275 1.275 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.156 0.844 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 21.642 0.010 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.067 3.933 4 C -0.195 4.195 5 C -0.126 4.126 6 C -0.043 4.043 7 C 0.087 3.913 8 N -0.189 5.189 9 C -0.069 4.069 10 C -0.024 4.024 11 C -0.047 4.047 12 C -0.054 4.054 13 N -0.096 5.096 14 C -0.084 4.084 15 C -0.128 4.128 16 C -0.039 4.039 17 N -0.204 5.204 18 H 0.265 0.735 19 C -0.148 4.148 20 C 0.073 3.927 21 O -0.213 6.213 22 C -0.013 4.013 23 C -0.010 4.010 24 C -0.564 4.564 25 H 0.077 0.923 26 C -0.141 4.141 27 N -0.528 5.528 28 Si 0.725 3.275 29 H -0.201 1.201 30 H -0.212 1.212 31 H -0.201 1.201 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.174 0.826 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.361 21.368 0.003 27.531 hybrid contribution -0.613 0.780 0.003 0.992 sum -17.974 22.147 0.006 28.523 Atomic orbital electron populations 1.23098 0.78777 1.04186 1.00956 1.86267 1.20795 1.25662 1.88154 1.18550 0.89502 0.85244 1.00029 1.20801 0.99881 0.90937 1.07917 1.20548 0.92285 0.97327 1.02481 1.17194 0.92009 0.87430 1.07630 1.21477 0.87066 0.85639 0.97152 1.70791 1.11700 1.15061 1.21391 1.18821 0.92376 0.89650 1.06086 1.20357 0.97274 0.90753 0.94014 1.15567 0.87626 0.90855 1.10640 1.25513 0.92790 0.93499 0.93574 1.81276 1.10267 1.08808 1.09221 1.20509 0.89614 1.00076 0.98152 1.19545 0.99249 0.88983 1.05031 1.19050 0.89480 0.91264 1.04144 1.43129 1.09434 1.05166 1.62714 0.73476 1.21225 1.01780 0.89257 1.02508 1.18309 0.88531 0.87130 0.98736 1.86317 1.21475 1.26535 1.86930 1.23443 0.74328 1.03522 0.99999 1.19105 0.94219 0.88734 0.98928 1.20949 0.90292 0.92966 1.52192 0.92276 1.24974 0.99077 0.95131 0.94928 1.69970 1.35542 0.97573 1.49763 0.86563 0.84876 0.77238 0.78804 1.20056 1.21192 1.20051 0.88088 0.92752 0.92758 0.84371 0.86109 0.83776 0.84280 0.84870 0.82643 0.92790 0.92797 0.95357 0.95360 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.20 10.27 -34.06 -0.35 -4.55 16 3 C 0.11 1.59 6.70 -38.99 -0.26 1.33 16 4 C -0.18 -1.75 9.02 -39.52 -0.36 -2.11 16 5 C -0.11 -0.97 9.68 -39.20 -0.38 -1.35 16 6 C -0.04 -0.48 5.87 -104.97 -0.62 -1.10 16 7 C 0.35 4.04 7.73 -154.55 -1.19 2.85 16 8 N -0.47 -6.45 10.84 -8.74 -0.09 -6.55 16 9 C 0.05 0.57 7.21 -84.74 -0.61 -0.04 16 10 C 0.00 -0.02 9.81 -38.75 -0.38 -0.40 16 11 C -0.04 -0.34 5.73 -106.91 -0.61 -0.95 16 12 C 0.26 2.59 15.31 -22.47 -0.34 2.25 16 13 N -0.42 -5.19 18.54 41.84 0.78 -4.42 16 14 C -0.06 -0.37 9.68 -39.49 -0.38 -0.75 16 15 C -0.11 -0.63 10.00 -39.93 -0.40 -1.03 16 16 C 0.07 0.63 7.29 -83.86 -0.61 0.02 16 17 N -0.59 -4.69 6.11 -8.39 -0.05 -4.74 16 18 H 0.43 1.76 7.99 -40.82 -0.33 1.44 16 19 C -0.13 -1.90 8.66 -39.07 -0.34 -2.24 16 20 C 0.12 2.00 6.69 -39.18 -0.26 1.74 16 21 O -0.30 -6.10 9.91 -34.41 -0.34 -6.44 16 22 C 0.06 1.30 4.68 37.16 0.17 1.47 16 23 C 0.03 0.72 5.34 -27.89 -0.15 0.57 16 24 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 25 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 26 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 27 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 28 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 34 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 35 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 36 H 0.12 0.63 7.09 -52.48 -0.37 0.26 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.16 2.49 6.03 -52.49 -0.32 2.18 16 41 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 42 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -35.05 396.22 -9.53 -44.58 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.01 Total: -2.55 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -6.14 Total: -11.94 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 1.37 Total: -41.59 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.69 Total: -10.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.05 -9.53 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.960 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds