Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35888 * 116.99651 * 2 1 4 4 C 1.38745 * 119.93554 * 359.97438 * 3 2 1 5 5 C 1.37892 * 120.14200 * 179.74203 * 4 3 2 6 6 C 1.39604 * 120.00898 * 0.55471 * 5 4 3 7 7 C 1.47795 * 120.06634 * 179.72272 * 6 5 4 8 8 N 1.31072 * 125.09723 * 179.97438 * 7 6 5 9 9 C 1.35619 * 109.56259 * 180.14392 * 8 7 6 10 10 C 1.39564 * 133.30028 * 179.90970 * 9 8 7 11 11 C 1.39154 * 119.50422 * 179.70807 * 10 9 8 12 12 C 1.43200 * 119.90383 * 179.97438 * 11 10 9 13 13 N 9.43688 * 160.79292 * 0.31768 * 5 1 2 14 14 C 1.40162 * 120.18892 * 359.96184 * 11 10 9 15 15 C 1.36491 * 120.46230 * 0.03820 * 14 11 10 16 16 C 1.39008 * 120.18314 * 359.97438 * 15 14 11 17 17 N 1.36941 * 125.10542 * 359.72332 * 7 6 5 18 18 H 0.97005 * 126.36132 * 0.03775 * 17 7 6 19 19 C 1.39608 * 119.86119 * 359.44307 * 6 5 4 20 20 C 1.38236 * 119.85889 * 0.28366 * 19 6 5 21 21 O 1.35998 * 120.00427 * 179.97438 * 20 19 6 22 22 C 1.42902 * 116.99803 * 359.97438 * 21 20 19 23 23 C 1.53002 * 109.46921 * 179.97438 * 22 21 20 24 24 C 1.50693 * 109.47307 * 179.97438 * 23 22 21 25 25 H 1.08006 * 119.99943 * 0.02562 * 24 23 22 26 26 C 1.37879 * 120.00127 * 180.02562 * 24 23 22 27 27 N 1.31515 * 119.99942 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99854 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47263 * 59.99970 * 28 26 24 30 30 H 1.48502 * 109.47043 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47082 * 299.99446 * 28 26 24 32 32 H 1.09006 * 109.46712 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47387 * 299.99742 * 1 2 3 34 34 H 1.09002 * 109.47222 * 59.99945 * 1 2 3 35 35 H 1.07993 * 119.92769 * 0.04123 * 4 3 2 36 36 H 1.08003 * 119.99464 * 180.29743 * 5 4 3 37 37 H 1.07991 * 120.24926 * 359.67106 * 10 9 8 38 38 H 1.07996 * 119.76981 * 180.02562 * 14 11 10 39 39 H 1.07996 * 119.90597 * 179.97438 * 15 14 11 40 40 H 1.07997 * 120.07286 * 180.29308 * 19 6 5 41 41 H 1.08998 * 109.46723 * 299.99581 * 22 21 20 42 42 H 1.08994 * 109.47362 * 59.99691 * 22 21 20 43 43 H 1.08996 * 109.47095 * 300.00368 * 23 22 21 44 44 H 1.09003 * 109.46677 * 59.99725 * 23 22 21 45 45 H 0.97001 * 119.99634 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2889 2.3735 -0.0005 5 6 1.9104 3.6044 0.0048 6 6 3.3042 3.6829 -0.0009 7 6 3.9716 5.0015 -0.0013 8 7 5.2687 5.1897 -0.0060 9 6 5.5348 6.5195 -0.0017 10 6 6.7185 7.2588 -0.0020 11 6 6.6581 8.6491 -0.0028 12 6 7.8674 9.4161 -0.0025 13 7 8.8267 10.0246 -0.0038 14 6 5.4172 9.3007 -0.0040 15 6 4.2576 8.5808 -0.0037 16 6 4.2976 7.1913 -0.0027 17 7 3.3277 6.2101 -0.0019 18 1 2.3678 6.3503 -0.0015 19 6 4.0662 2.5131 -0.0003 20 6 3.4374 1.2821 0.0001 21 8 4.1768 0.1407 0.0001 22 6 5.5982 0.2885 -0.0007 23 6 6.2547 -1.0935 0.0002 24 6 7.7535 -0.9377 -0.0014 25 1 8.1939 0.0485 -0.0024 26 6 8.5627 -2.0540 -0.0014 27 7 8.0264 -3.2549 0.0003 28 14 10.4207 -1.8608 -0.0026 29 1 10.8414 -1.1129 1.2094 30 1 11.0579 -3.2022 -0.0019 31 1 10.8399 -1.1138 -1.2157 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 0.2105 2.3144 -0.0003 36 1 1.3187 4.5080 0.0093 37 1 7.6741 6.7558 -0.0010 38 1 5.3783 10.3799 -0.0051 39 1 3.3064 9.0921 -0.0043 40 1 5.1447 2.5698 0.0001 41 1 5.9058 0.8368 -0.8911 42 1 5.9069 0.8376 0.8888 43 1 5.9468 -1.6414 0.8907 44 1 5.9459 -1.6429 -0.8892 45 1 8.5958 -4.0402 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095442576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = 26.888277 kcal Electronic energy + Delta-G solvation = -29926.605722 eV Core-core repulsion = 25681.718538 eV Total energy + Delta-G solvation = -4244.887184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.22840 -41.50948 -39.52856 -39.20297 -37.94942 -36.96413 -35.47099 -34.39700 -32.70190 -32.12170 -31.49574 -30.78617 -29.85820 -28.14972 -27.04644 -25.15374 -24.37175 -23.93959 -22.97468 -22.34110 -21.89138 -19.89456 -19.82753 -18.95651 -18.68009 -18.02368 -17.52232 -17.19304 -17.01377 -16.53214 -16.44670 -16.34446 -16.13368 -15.68985 -15.59767 -15.13341 -14.99456 -14.92391 -14.69053 -14.32015 -14.24853 -14.05171 -13.89979 -13.45481 -13.37132 -13.28550 -13.15348 -12.77212 -12.65733 -12.63966 -12.57038 -12.39933 -12.08045 -12.04472 -11.82065 -11.62726 -11.60785 -11.42105 -11.08422 -10.61121 -10.01255 -9.46887 -9.33173 -8.62855 -8.26232 -6.39582 -0.56920 -0.14897 0.28620 0.40656 1.39964 1.44044 1.51874 1.59751 1.69213 1.72705 1.98222 2.24466 2.35800 2.48669 2.68280 2.72297 2.90451 3.07792 3.10568 3.45656 3.76862 3.92806 3.94532 4.05034 4.11069 4.18858 4.23733 4.26555 4.31889 4.37316 4.44634 4.49002 4.53719 4.67828 4.74223 4.80614 4.87826 4.99510 5.10483 5.17108 5.25034 5.27910 5.31877 5.39727 5.47793 5.56257 5.65329 5.70244 6.06131 6.20420 6.34182 6.44322 6.64394 6.74554 6.75853 7.30085 8.86722 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.005914 B = 0.002762 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4733.545638 B =10134.849076 C =14842.644234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.336 6.336 3 C 0.105 3.895 4 C -0.160 4.160 5 C -0.076 4.076 6 C -0.046 4.046 7 C 0.339 3.661 8 N -0.520 5.520 9 C 0.013 3.987 10 C -0.019 4.019 11 C -0.039 4.039 12 C 0.285 3.715 13 N -0.466 5.466 14 C -0.049 4.049 15 C -0.090 4.090 16 C 0.080 3.920 17 N -0.571 5.571 18 H 0.446 0.554 19 C -0.138 4.138 20 C 0.070 3.930 21 O -0.330 6.330 22 C 0.085 3.915 23 C 0.032 3.968 24 C -0.547 4.547 25 H 0.067 0.933 26 C 0.005 3.995 27 N -0.929 5.929 28 Si 0.973 3.027 29 H -0.265 1.265 30 H -0.279 1.279 31 H -0.265 1.265 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.176 0.824 37 H 0.132 0.868 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.056 0.944 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.837 25.742 0.011 34.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.250 6.250 3 C 0.058 3.942 4 C -0.179 4.179 5 C -0.096 4.096 6 C -0.048 4.048 7 C 0.074 3.926 8 N -0.240 5.240 9 C -0.106 4.106 10 C -0.041 4.041 11 C -0.045 4.045 12 C -0.029 4.029 13 N -0.142 5.142 14 C -0.070 4.070 15 C -0.110 4.110 16 C -0.033 4.033 17 N -0.184 5.184 18 H 0.290 0.710 19 C -0.159 4.159 20 C 0.024 3.976 21 O -0.244 6.244 22 C 0.011 3.989 23 C -0.005 4.005 24 C -0.585 4.585 25 H 0.085 0.915 26 C -0.194 4.194 27 N -0.569 5.569 28 Si 0.796 3.204 29 H -0.190 1.190 30 H -0.205 1.205 31 H -0.190 1.190 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.193 0.807 37 H 0.150 0.850 38 H 0.191 0.809 39 H 0.196 0.804 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.617 25.499 0.005 32.790 hybrid contribution 0.188 -0.386 0.003 0.430 sum -20.428 25.112 0.008 32.372 Atomic orbital electron populations 1.23463 0.75848 1.05623 1.03080 1.86215 1.23998 1.26464 1.88289 1.18824 0.88629 0.86734 1.00042 1.21296 1.01674 0.89407 1.05494 1.21133 0.91065 0.99138 0.98273 1.17327 0.93301 0.86619 1.07557 1.21241 0.86875 0.86426 0.98019 1.70676 1.13589 1.17076 1.22694 1.19061 0.94127 0.89324 1.08066 1.20337 0.96835 0.91564 0.95369 1.15627 0.88047 0.89954 1.10840 1.25711 0.92497 0.92516 0.92213 1.81297 1.11431 1.10515 1.10964 1.20915 0.88328 1.01721 0.96078 1.19993 1.00983 0.87421 1.02638 1.19317 0.88357 0.92323 1.03311 1.42903 1.10303 1.03581 1.61582 0.71005 1.21074 1.00971 0.90250 1.03575 1.18697 0.89716 0.86283 1.02868 1.86193 1.20300 1.29258 1.88693 1.22836 0.75861 1.00025 1.00172 1.18918 0.94571 0.91006 0.96022 1.21358 0.91267 0.93591 1.52270 0.91465 1.25994 1.04700 0.94602 0.94122 1.70112 1.37667 0.98527 1.50549 0.85386 0.78021 0.77585 0.79384 1.18979 1.20456 1.18966 0.87337 0.90474 0.90483 0.79964 0.80666 0.84999 0.80933 0.80420 0.85180 0.92589 0.92593 0.98263 0.98270 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -9.59 10.27 -78.26 -0.80 -10.40 16 3 C 0.10 2.89 6.70 22.65 0.15 3.04 16 4 C -0.16 -2.60 9.02 22.31 0.20 -2.40 16 5 C -0.08 -1.08 9.68 22.52 0.22 -0.86 16 6 C -0.05 -1.04 5.87 -20.09 -0.12 -1.16 16 7 C 0.34 7.41 7.73 136.46 1.05 8.47 16 8 N -0.52 -14.69 10.84 -181.57 -1.97 -16.66 16 9 C 0.01 0.29 7.21 39.50 0.28 0.57 16 10 C -0.02 -0.37 9.81 22.81 0.22 -0.15 16 11 C -0.04 -0.58 5.73 -21.35 -0.12 -0.70 16 12 C 0.29 5.44 15.31 88.33 1.35 6.79 16 13 N -0.47 -11.43 18.54 19.00 0.35 -11.08 16 14 C -0.05 -0.38 9.68 22.33 0.22 -0.17 16 15 C -0.09 -0.60 10.00 22.05 0.22 -0.38 16 16 C 0.08 1.14 7.29 38.98 0.28 1.42 16 17 N -0.57 -6.93 6.11 -180.47 -1.10 -8.04 16 18 H 0.45 1.19 7.99 -92.70 -0.74 0.45 16 19 C -0.14 -4.38 8.66 22.60 0.20 -4.18 16 20 C 0.07 2.48 6.69 22.53 0.15 2.63 16 21 O -0.33 -14.76 9.91 -79.50 -0.79 -15.55 16 22 C 0.09 4.01 4.68 71.98 0.34 4.35 16 23 C 0.03 1.83 5.34 29.85 0.16 1.99 16 24 C -0.55 -32.28 9.11 25.60 0.23 -32.05 16 25 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 26 C 0.00 0.27 5.46 84.66 0.46 0.73 16 27 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 28 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 31 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 32 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 0.74 7.65 -2.39 -0.02 0.73 16 34 H 0.08 0.74 7.65 -2.39 -0.02 0.73 16 35 H 0.18 1.33 6.27 -2.91 -0.02 1.32 16 36 H 0.18 0.57 7.09 -2.91 -0.02 0.55 16 37 H 0.13 2.76 8.06 -2.92 -0.02 2.74 16 38 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 39 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 40 H 0.13 4.67 6.03 -2.91 -0.02 4.66 16 41 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 42 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 43 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -86.17 396.22 4.95 -81.22 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 0.33 Total: 1.66 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 6.62 Total: -10.74 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -2.43 Total: -93.45 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.59 Total: -25.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -86.17 4.95 -81.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.112 kcal (2) G-P(sol) polarization free energy of solvation -86.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds