Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 119.99997 * 2 1 4 4 H 1.08006 * 119.99939 * 202.31641 * 3 2 1 5 5 C 1.38809 * 120.00364 * 22.32330 * 3 2 1 6 6 N 1.31619 * 119.99881 * 11.13259 * 5 3 2 7 7 Si 1.86797 * 120.00135 * 191.13543 * 5 3 2 8 8 H 1.48498 * 109.47398 * 89.99952 * 7 5 3 9 9 H 1.48504 * 109.46949 * 210.00102 * 7 5 3 10 10 H 1.48505 * 109.47120 * 329.99707 * 7 5 3 11 11 S 1.65602 * 119.99688 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40481 * 156.46014 * 11 2 1 13 13 O 1.42106 * 106.40266 * 23.53611 * 11 2 1 14 14 C 1.76204 * 107.21720 * 269.99825 * 11 2 1 15 15 C 1.38255 * 119.99388 * 270.02174 * 14 11 2 16 16 C 1.38216 * 120.02076 * 179.97438 * 15 14 11 17 17 C 1.38242 * 120.00904 * 359.76910 * 16 15 14 18 18 N 1.48004 * 120.00732 * 180.25146 * 17 16 15 19 19 O 1.21804 * 120.00083 * 0.23969 * 18 17 16 20 20 O 1.21801 * 120.00167 * 180.23192 * 18 17 16 21 21 C 1.38301 * 119.99072 * 0.48834 * 17 16 15 22 22 Br 1.89097 * 120.01288 * 179.76633 * 21 17 16 23 23 C 1.38194 * 119.99419 * 89.99734 * 14 11 2 24 24 H 1.09001 * 109.47136 * 274.22079 * 1 2 3 25 25 H 1.09008 * 109.46902 * 34.21556 * 1 2 3 26 26 H 1.09004 * 109.47571 * 154.21784 * 1 2 3 27 27 H 0.96997 * 120.00153 * 180.02562 * 6 5 3 28 28 H 1.07997 * 119.99182 * 0.02562 * 15 14 11 29 29 H 1.08000 * 120.00023 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.00825 * 0.02958 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2209 -0.3552 5 6 1.5337 2.3430 0.4566 6 7 0.3818 2.2696 1.0891 7 14 2.3396 4.0042 0.1733 8 1 1.8759 4.5651 -1.1211 9 1 1.9685 4.9286 1.2747 10 1 3.8151 3.8395 0.1414 11 16 2.2929 -1.4342 -0.0006 12 8 3.5758 -1.1567 -0.5449 13 8 1.4111 -2.4063 -0.5454 14 6 2.5537 -1.8866 1.6822 15 6 3.6928 -1.4651 2.3427 16 6 3.8977 -1.8192 3.6629 17 6 2.9613 -2.5911 4.3250 18 7 3.1781 -2.9656 5.7404 19 8 4.1795 -2.5900 6.3233 20 8 2.3550 -3.6493 6.3224 21 6 1.8243 -3.0175 3.6632 22 35 0.5462 -4.0790 4.5663 23 6 1.6194 -2.6623 2.3418 24 1 -0.3633 0.0756 1.0249 25 1 -0.3633 0.8499 -0.5779 26 1 -0.3634 -0.9254 -0.4470 27 1 -0.0489 3.0782 1.4078 28 1 4.4224 -0.8582 1.8272 29 1 4.7874 -1.4893 4.1787 30 1 0.7296 -2.9917 1.8258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095939313.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -19.458527 kcal Electronic energy + Delta-G solvation = -22612.687899 eV Core-core repulsion = 18779.156438 eV Total energy + Delta-G solvation = -3833.531462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 363.961 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08412 -39.15015 -36.47978 -36.14655 -36.07428 -34.65414 -32.66199 -31.97455 -31.89090 -29.58145 -26.88087 -26.43598 -23.89255 -22.97182 -22.50074 -19.23508 -18.86988 -18.52992 -17.84071 -17.47709 -17.11101 -16.45939 -15.74022 -15.00891 -14.85133 -14.47460 -13.79216 -13.72549 -13.55699 -13.47308 -12.91612 -12.20502 -12.04897 -11.75890 -11.60555 -11.38571 -11.29337 -11.23955 -11.21339 -10.94173 -10.90076 -10.87232 -10.55957 -10.47825 -10.30000 -9.71505 -9.68019 -9.47610 -9.00392 -8.54053 -7.05085 -4.42667 -0.27681 0.89068 1.19305 1.22275 1.42202 1.58555 2.87503 2.92420 2.95666 3.12752 3.62750 4.09267 4.26897 4.35170 4.67216 4.78038 4.90264 5.14495 5.37433 5.41311 5.66653 5.69641 6.07161 6.15767 6.29593 6.50851 6.53440 6.74653 6.77939 7.06186 7.76622 7.81375 8.12267 8.62231 9.86699 Molecular weight = 363.96amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.004121 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.631972 B = 6792.069911 C = 7241.431748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.783 5.783 3 C -0.211 4.211 4 H 0.127 0.873 5 C 0.027 3.973 6 N -0.806 5.806 7 Si 0.936 3.064 8 H -0.267 1.267 9 H -0.276 1.276 10 H -0.258 1.258 11 S 2.470 3.530 12 O -0.978 6.978 13 O -0.992 6.992 14 C -0.596 4.596 15 C -0.020 4.020 16 C -0.070 4.070 17 C -0.011 4.011 18 N 0.027 4.973 19 O -0.174 6.174 20 O -0.138 6.138 21 C -0.066 4.066 22 Br 0.004 6.996 23 C -0.011 4.011 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.285 0.715 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -3.423 4.144 5.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.604 5.604 3 C -0.365 4.365 4 H 0.144 0.856 5 C -0.189 4.189 6 N -0.444 5.444 7 Si 0.760 3.240 8 H -0.192 1.192 9 H -0.201 1.201 10 H -0.182 1.182 11 S 2.566 3.434 12 O -0.967 6.967 13 O -0.982 6.982 14 C -0.670 4.670 15 C -0.040 4.040 16 C -0.090 4.090 17 C -0.097 4.097 18 N 0.544 4.456 19 O -0.384 6.384 20 O -0.357 6.357 21 C -0.148 4.148 22 Br 0.090 6.910 23 C -0.032 4.032 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.179 0.821 29 H 0.176 0.824 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.943 -4.428 3.272 5.586 hybrid contribution 0.593 0.899 1.236 1.640 sum -0.350 -3.529 4.508 5.735 Atomic orbital electron populations 1.21505 0.78595 1.00834 1.02385 1.54921 1.13640 1.19141 1.72661 1.20483 1.01716 0.82674 1.31618 0.85578 1.26049 0.96404 1.02037 0.94415 1.70092 1.14264 1.31590 1.28504 0.85722 0.80273 0.79122 0.78892 1.19175 1.20082 1.18162 1.15368 0.74342 0.75497 0.78151 1.93343 1.41431 1.84332 1.77588 1.93340 1.64708 1.61823 1.78299 1.33621 0.98075 1.00780 1.34523 1.21095 0.95901 0.95104 0.91941 1.21213 0.98152 0.94555 0.95117 1.20844 0.99260 1.07013 0.82584 1.43582 1.00002 0.99006 1.02962 1.94508 1.18749 1.57758 1.67400 1.94657 1.39054 1.34130 1.67900 1.21867 0.94802 1.01657 0.96443 1.96821 1.51619 1.65712 1.76850 1.20945 0.99116 0.93092 0.90078 0.92512 0.90157 0.92917 0.90443 0.82075 0.82395 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.19 8.92 59.85 0.53 2.72 16 2 N -0.78 -16.36 3.31 -66.68 -0.22 -16.58 16 3 C -0.21 -4.46 9.44 -15.06 -0.14 -4.60 16 4 H 0.13 2.61 7.16 -52.48 -0.38 2.23 16 5 C 0.03 0.55 5.13 -17.43 -0.09 0.46 16 6 N -0.81 -16.84 10.57 55.49 0.59 -16.25 16 7 Si 0.94 15.88 29.57 -169.99 -5.03 10.85 16 8 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 9 H -0.28 -4.71 7.11 56.52 0.40 -4.31 16 10 H -0.26 -4.32 7.11 56.52 0.40 -3.92 16 11 S 2.47 51.29 5.65 -107.50 -0.61 50.68 16 12 O -0.98 -22.10 16.08 -57.17 -0.92 -23.02 16 13 O -0.99 -22.09 15.84 -57.17 -0.91 -22.99 16 14 C -0.60 -11.08 5.97 -39.59 -0.24 -11.32 16 15 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 16 C -0.07 -1.10 9.55 -39.59 -0.38 -1.48 16 17 C -0.01 -0.19 6.85 -79.93 -0.55 -0.74 16 18 N 0.03 0.47 4.45 33.97 0.15 0.62 16 19 O -0.17 -3.00 18.45 -29.46 -0.54 -3.54 16 20 O -0.14 -2.40 15.52 -29.46 -0.46 -2.86 16 21 C -0.07 -1.13 6.22 -39.52 -0.25 -1.37 16 22 Br 0.00 0.06 30.31 -68.01 -2.06 -2.00 16 23 C -0.01 -0.19 9.26 -39.56 -0.37 -0.56 16 24 H 0.06 1.11 7.42 -51.93 -0.39 0.72 16 25 H 0.08 1.56 7.18 -51.92 -0.37 1.19 16 26 H 0.05 0.96 6.93 -51.93 -0.36 0.60 16 27 H 0.28 5.54 8.31 -40.82 -0.34 5.20 16 28 H 0.16 2.47 7.62 -52.49 -0.40 2.07 16 29 H 0.16 2.06 7.61 -52.49 -0.40 1.66 16 30 H 0.16 2.63 7.62 -52.49 -0.40 2.23 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -25.45 301.80 -9.13 -34.59 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -1.83 Total: 3.56 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.85 Total: -17.60 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.52 Total: -32.21 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -2.83 Total: -52.41 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -5.03 Total: 10.85 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.61 Total: 50.68 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -2.06 Total: -2.00 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.45 -9.13 -34.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939313.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.129 kcal (2) G-P(sol) polarization free energy of solvation -25.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds