Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 119.99997 * 2 1 4 4 H 1.08006 * 119.99939 * 202.31641 * 3 2 1 5 5 C 1.38809 * 120.00364 * 22.32330 * 3 2 1 6 6 N 1.31619 * 119.99881 * 11.13259 * 5 3 2 7 7 Si 1.86797 * 120.00135 * 191.13543 * 5 3 2 8 8 H 1.48498 * 109.47398 * 89.99952 * 7 5 3 9 9 H 1.48504 * 109.46949 * 210.00102 * 7 5 3 10 10 H 1.48505 * 109.47120 * 329.99707 * 7 5 3 11 11 S 1.65602 * 119.99688 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40481 * 156.46014 * 11 2 1 13 13 O 1.42106 * 106.40266 * 23.53611 * 11 2 1 14 14 C 1.76204 * 107.21720 * 269.99825 * 11 2 1 15 15 C 1.38255 * 119.99388 * 270.02174 * 14 11 2 16 16 C 1.38216 * 120.02076 * 179.97438 * 15 14 11 17 17 C 1.38242 * 120.00904 * 359.76910 * 16 15 14 18 18 N 1.48004 * 120.00732 * 180.25146 * 17 16 15 19 19 O 1.21804 * 120.00083 * 0.23969 * 18 17 16 20 20 O 1.21801 * 120.00167 * 180.23192 * 18 17 16 21 21 C 1.38301 * 119.99072 * 0.48834 * 17 16 15 22 22 Br 1.89097 * 120.01288 * 179.76633 * 21 17 16 23 23 C 1.38194 * 119.99419 * 89.99734 * 14 11 2 24 24 H 1.09001 * 109.47136 * 274.22079 * 1 2 3 25 25 H 1.09008 * 109.46902 * 34.21556 * 1 2 3 26 26 H 1.09004 * 109.47571 * 154.21784 * 1 2 3 27 27 H 0.96997 * 120.00153 * 180.02562 * 6 5 3 28 28 H 1.07997 * 119.99182 * 0.02562 * 15 14 11 29 29 H 1.08000 * 120.00023 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.00825 * 0.02958 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2209 -0.3552 5 6 1.5337 2.3430 0.4566 6 7 0.3818 2.2696 1.0891 7 14 2.3396 4.0042 0.1733 8 1 1.8759 4.5651 -1.1211 9 1 1.9685 4.9286 1.2747 10 1 3.8151 3.8395 0.1414 11 16 2.2929 -1.4342 -0.0006 12 8 3.5758 -1.1567 -0.5449 13 8 1.4111 -2.4063 -0.5454 14 6 2.5537 -1.8866 1.6822 15 6 3.6928 -1.4651 2.3427 16 6 3.8977 -1.8192 3.6629 17 6 2.9613 -2.5911 4.3250 18 7 3.1781 -2.9656 5.7404 19 8 4.1795 -2.5900 6.3233 20 8 2.3550 -3.6493 6.3224 21 6 1.8243 -3.0175 3.6632 22 35 0.5462 -4.0790 4.5663 23 6 1.6194 -2.6623 2.3418 24 1 -0.3633 0.0756 1.0249 25 1 -0.3633 0.8499 -0.5779 26 1 -0.3634 -0.9254 -0.4470 27 1 -0.0489 3.0782 1.4078 28 1 4.4224 -0.8582 1.8272 29 1 4.7874 -1.4893 4.1787 30 1 0.7296 -2.9917 1.8258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095939313.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -33.171506 kcal Electronic energy + Delta-G solvation = -22613.282539 eV Core-core repulsion = 18779.156438 eV Total energy + Delta-G solvation = -3834.126101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 363.961 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.45614 -40.51249 -37.86364 -37.80485 -37.68321 -36.39154 -33.99675 -33.52711 -33.26398 -30.89938 -28.44014 -27.82392 -25.47032 -24.32217 -23.89281 -20.60891 -20.42895 -19.90656 -19.38300 -18.85275 -18.69306 -18.08389 -17.17464 -16.51459 -16.17144 -16.00691 -15.20285 -15.12844 -15.00532 -14.91930 -14.44913 -13.75665 -13.39018 -13.26655 -13.07218 -12.91922 -12.70818 -12.67577 -12.61001 -12.54960 -12.38452 -12.21012 -12.19085 -11.98001 -11.83717 -11.20635 -11.10288 -10.77074 -10.31255 -10.10458 -8.56276 -6.04254 -1.64663 -0.45191 -0.31092 -0.13367 -0.01690 0.21237 1.52822 1.56104 1.64828 1.74903 2.21028 2.54080 2.81624 2.94986 3.14650 3.35174 3.49753 3.79203 3.98293 4.08014 4.25028 4.34304 4.52712 4.74938 4.93186 4.98583 5.16022 5.18165 5.23305 5.50539 6.25641 6.39512 6.57842 7.05945 8.37041 Molecular weight = 363.96amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.004121 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.631972 B = 6792.069911 C = 7241.431748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.794 5.794 3 C -0.239 4.239 4 H 0.125 0.875 5 C 0.002 3.998 6 N -0.831 5.831 7 Si 0.991 3.009 8 H -0.265 1.265 9 H -0.276 1.276 10 H -0.254 1.254 11 S 2.490 3.510 12 O -0.999 6.999 13 O -1.012 7.012 14 C -0.613 4.613 15 C -0.021 4.021 16 C -0.059 4.059 17 C -0.018 4.018 18 N 0.025 4.975 19 O -0.165 6.165 20 O -0.144 6.144 21 C -0.074 4.074 22 Br 0.022 6.978 23 C -0.016 4.016 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.289 0.711 28 H 0.176 0.824 29 H 0.189 0.811 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 -3.141 5.013 5.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.615 5.615 3 C -0.392 4.392 4 H 0.142 0.858 5 C -0.212 4.212 6 N -0.469 5.469 7 Si 0.813 3.187 8 H -0.190 1.190 9 H -0.201 1.201 10 H -0.178 1.178 11 S 2.589 3.411 12 O -0.988 6.988 13 O -1.001 7.001 14 C -0.689 4.689 15 C -0.041 4.041 16 C -0.079 4.079 17 C -0.103 4.103 18 N 0.543 4.457 19 O -0.378 6.378 20 O -0.362 6.362 21 C -0.156 4.156 22 Br 0.108 6.892 23 C -0.037 4.037 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.193 0.807 29 H 0.206 0.794 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.251 -4.156 4.122 5.859 hybrid contribution 0.397 0.651 1.088 1.328 sum 0.145 -3.505 5.209 6.281 Atomic orbital electron populations 1.21451 0.78144 1.01030 1.02052 1.54756 1.13939 1.19007 1.73843 1.20611 1.02001 0.83201 1.33421 0.85775 1.26657 0.96591 1.04216 0.93741 1.70139 1.15103 1.32420 1.29273 0.84908 0.79584 0.75633 0.78585 1.19018 1.20077 1.17778 1.14419 0.73570 0.74998 0.78114 1.93307 1.42368 1.84665 1.78476 1.93307 1.65194 1.62468 1.79135 1.33322 0.99634 1.02533 1.33459 1.21329 0.95518 0.94784 0.92484 1.21513 0.98640 0.93205 0.94561 1.21078 0.99566 1.07072 0.82591 1.43614 1.00039 0.99039 1.03012 1.94502 1.18567 1.57381 1.67351 1.94662 1.39159 1.34397 1.67956 1.21988 0.95384 1.01839 0.96425 1.96833 1.50915 1.65082 1.76347 1.21027 0.99178 0.93034 0.90498 0.93017 0.90537 0.92121 0.90095 0.80684 0.79355 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.65 8.92 127.77 1.14 5.79 16 2 N -0.79 -33.24 3.31 -364.88 -1.21 -34.45 16 3 C -0.24 -10.10 9.44 84.03 0.79 -9.30 16 4 H 0.12 5.14 7.16 -2.91 -0.02 5.12 16 5 C 0.00 0.07 5.13 84.86 0.44 0.51 16 6 N -0.83 -34.53 10.57 21.65 0.23 -34.30 16 7 Si 0.99 31.75 29.57 68.60 2.03 33.78 16 8 H -0.27 -8.38 7.11 99.48 0.71 -7.67 16 9 H -0.28 -8.76 7.11 99.48 0.71 -8.05 16 10 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 11 S 2.49 102.95 5.65 -56.49 -0.32 102.63 16 12 O -1.00 -44.91 16.08 -128.00 -2.06 -46.97 16 13 O -1.01 -44.92 15.84 -128.00 -2.03 -46.95 16 14 C -0.61 -22.25 5.97 22.26 0.13 -22.12 16 15 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 16 C -0.06 -1.71 9.55 22.27 0.21 -1.50 16 17 C -0.02 -0.57 6.85 36.39 0.25 -0.32 16 18 N 0.03 0.81 4.45 -46.43 -0.21 0.61 16 19 O -0.17 -5.26 18.45 18.88 0.35 -4.91 16 20 O -0.14 -4.73 15.52 18.89 0.29 -4.44 16 21 C -0.07 -2.44 6.22 22.31 0.14 -2.30 16 22 Br 0.02 0.64 30.31 -20.37 -0.62 0.02 16 23 C -0.02 -0.55 9.26 22.29 0.21 -0.35 16 24 H 0.05 2.04 7.42 -2.39 -0.02 2.02 16 25 H 0.08 3.01 7.18 -2.38 -0.02 2.99 16 26 H 0.06 2.21 6.93 -2.38 -0.02 2.20 16 27 H 0.29 11.13 8.31 -92.71 -0.77 10.36 16 28 H 0.18 5.06 7.62 -2.91 -0.02 5.03 16 29 H 0.19 4.24 7.61 -2.91 -0.02 4.21 16 30 H 0.17 5.37 7.62 -2.91 -0.02 5.35 16 Total: -1.00 -51.88 301.80 1.20 -50.68 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.21 Total: 14.36 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.52 Total: -30.06 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.19 Total: -68.14 kcal Atomic # 8 Polarization: -99.83 SS G_CDS: -3.44 Total: -103.27 kcal Atomic # 14 Polarization: 31.75 SS G_CDS: 2.03 Total: 33.78 kcal Atomic # 16 Polarization: 102.95 SS G_CDS: -0.32 Total: 102.63 kcal Atomic # 35 Polarization: 0.64 SS G_CDS: -0.62 Total: 0.02 kcal Total: -51.88 1.20 -50.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939313.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -51.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds