Wall clock time and date at job start Tue Mar 31 2020 05:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 116.99889 * 2 1 4 4 C 1.38748 * 120.04718 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.95451 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97812 * 180.02562 * 5 4 3 7 7 C 1.38362 * 120.04682 * 359.97438 * 5 4 3 8 8 Br 1.89101 * 119.95511 * 180.02562 * 7 5 4 9 9 C 1.38330 * 120.09102 * 0.02562 * 7 5 4 10 10 C 1.38157 * 120.04263 * 0.02562 * 9 7 5 11 11 S 1.76205 * 120.01911 * 179.97438 * 10 9 7 12 12 O 1.42107 * 106.40085 * 228.53760 * 11 10 9 13 13 O 1.42095 * 106.40389 * 1.45709 * 11 10 9 14 14 N 1.65599 * 107.22032 * 115.00025 * 11 10 9 15 15 C 1.46506 * 119.99568 * 269.99809 * 14 11 10 16 16 C 1.36930 * 120.00093 * 89.99831 * 14 11 10 17 17 H 1.08004 * 120.00472 * 22.40609 * 16 14 11 18 18 C 1.38822 * 120.00058 * 202.40773 * 16 14 11 19 19 N 1.31620 * 119.99563 * 11.11262 * 18 16 14 20 20 Si 1.86794 * 120.00155 * 191.11781 * 18 16 14 21 21 H 1.48499 * 109.47426 * 59.99492 * 20 18 16 22 22 H 1.48498 * 109.47313 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47058 * 299.99817 * 20 18 16 24 24 H 1.08999 * 109.47721 * 300.00459 * 1 2 3 25 25 H 1.09009 * 109.46888 * 59.99750 * 1 2 3 26 26 H 1.08997 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.02429 * 0.29132 * 4 3 2 28 28 H 1.08997 * 109.47719 * 89.99493 * 6 5 4 29 29 H 1.08994 * 109.47132 * 209.99793 * 6 5 4 30 30 H 1.09002 * 109.46943 * 329.99497 * 6 5 4 31 31 H 1.07998 * 119.97347 * 179.97438 * 9 7 5 32 32 H 1.08996 * 109.46774 * 94.21858 * 15 14 11 33 33 H 1.08997 * 109.46716 * 214.21530 * 15 14 11 34 34 H 1.09000 * 109.46914 * 334.21817 * 15 14 11 35 35 H 0.96999 * 119.99450 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9203 3.6050 0.0000 6 6 1.1011 4.8698 0.0012 7 6 3.3021 3.6763 -0.0005 8 35 4.1606 5.3612 -0.0005 9 6 4.0564 2.5168 -0.0011 10 6 3.4311 1.2848 -0.0016 11 16 4.3926 -0.1918 -0.0030 12 8 3.8547 -1.0199 -1.0249 13 8 5.7535 0.2154 0.0314 14 7 4.1005 -0.9683 1.4302 15 6 4.9352 -0.6847 2.6003 16 6 3.0789 -1.8755 1.5216 17 1 2.7027 -2.3568 0.6309 18 6 2.5266 -2.1765 2.7591 19 7 2.8253 -1.4416 3.8094 20 14 1.3596 -3.6246 2.9338 21 1 2.0585 -4.8740 2.5393 22 1 0.9126 -3.7327 4.3458 23 1 0.1802 -3.4187 2.0551 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2127 2.3201 0.0057 28 1 0.9046 5.1746 1.0290 29 1 1.6499 5.6586 -0.5131 30 1 0.1560 4.6910 -0.5117 31 1 5.1348 2.5747 -0.0019 32 1 4.4605 0.0865 3.2069 33 1 5.0513 -1.5924 3.1924 34 1 5.9148 -0.3371 2.2721 35 1 2.4397 -1.6523 4.6742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095939320.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:21 Heat of formation + Delta-G solvation = -69.818818 kcal Electronic energy + Delta-G solvation = -23652.556510 eV Core-core repulsion = 20018.100268 eV Total energy + Delta-G solvation = -3634.456242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 362.997 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.88262 -37.45099 -35.68516 -35.61711 -34.34262 -32.73730 -31.52506 -31.43585 -28.74234 -27.76335 -26.41028 -26.19046 -23.46398 -22.06173 -21.43470 -18.51142 -17.87668 -16.93615 -16.71747 -15.99606 -15.92670 -15.36957 -14.58478 -14.25247 -14.15001 -14.07206 -13.84997 -13.75727 -13.20571 -12.71819 -12.31498 -12.22886 -12.01672 -11.80568 -11.39682 -11.36516 -11.26172 -11.18357 -11.00643 -10.98433 -10.67275 -10.63856 -10.18088 -10.15005 -10.09917 -10.05684 -9.64722 -9.23985 -8.81485 -8.08154 -7.88577 -6.52747 -3.96476 1.20034 1.51209 1.78695 1.90405 3.09027 3.12959 3.18333 3.58589 3.67353 3.99139 4.50325 4.77902 4.81600 4.89909 5.06292 5.22185 5.32188 5.43638 5.53412 5.58976 5.67977 5.79349 5.83123 5.89599 6.02231 6.29151 6.31421 6.43728 6.51905 6.87454 6.90711 7.14733 7.29489 7.47007 7.62068 8.33242 8.68638 9.16454 10.43476 Molecular weight = 363.00amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.004380 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.426324 B = 6391.762248 C = 7034.226748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.274 6.274 3 C 0.245 3.755 4 C -0.234 4.234 5 C 0.009 3.991 6 C -0.126 4.126 7 C -0.159 4.159 8 Br -0.063 7.063 9 C 0.035 3.965 10 C -0.691 4.691 11 S 2.536 3.464 12 O -0.975 6.975 13 O -1.005 7.005 14 N -0.801 5.801 15 C 0.122 3.878 16 C -0.220 4.220 17 H 0.117 0.883 18 C 0.029 3.971 19 N -0.839 5.839 20 Si 0.925 3.075 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 10.106 -2.522 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.184 6.184 3 C 0.196 3.804 4 C -0.254 4.254 5 C 0.006 3.994 6 C -0.182 4.182 7 C -0.238 4.238 8 Br 0.021 6.979 9 C 0.014 3.986 10 C -0.769 4.769 11 S 2.632 3.368 12 O -0.965 6.965 13 O -0.995 6.995 14 N -0.626 5.626 15 C -0.024 4.024 16 C -0.368 4.368 17 H 0.134 0.866 18 C -0.183 4.183 19 N -0.480 5.480 20 Si 0.751 3.249 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.194 1.194 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.122 0.878 27 H 0.152 0.848 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.165 0.835 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.145 10.540 -3.183 11.765 hybrid contribution -1.713 -0.072 0.545 1.799 sum -5.858 10.468 -2.638 12.282 Atomic orbital electron populations 1.23100 0.78694 1.04410 1.00634 1.86437 1.21092 1.25041 1.85827 1.18458 0.90872 0.84738 0.86336 1.21085 0.99965 0.91453 1.12868 1.19572 0.91846 0.95313 0.92633 1.21035 0.99450 0.94570 1.03193 1.21548 0.94172 0.91039 1.17082 1.96543 1.79365 1.23823 1.98125 1.20691 1.00134 0.88918 0.88876 1.31689 1.05343 1.22270 1.17553 1.11543 0.74783 0.72950 0.77545 1.93364 1.79855 1.65291 1.57946 1.93317 1.35089 1.83220 1.87869 1.54121 1.39016 1.40674 1.28758 1.21319 0.90994 1.02415 0.87661 1.19976 1.12044 1.09218 0.95572 0.86567 1.25732 0.97267 0.99290 0.95985 1.70111 1.40670 1.36641 1.00579 0.86000 0.80249 0.81159 0.77494 1.19299 1.20751 1.19389 0.92631 0.93041 0.87787 0.84766 0.90202 0.90329 0.91093 0.83538 0.93002 0.90695 0.93770 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.27 -5.55 7.81 -29.16 -0.23 -5.78 16 3 C 0.25 4.97 6.63 -39.22 -0.26 4.71 16 4 C -0.23 -3.91 8.69 -39.44 -0.34 -4.26 16 5 C 0.01 0.14 5.88 -104.62 -0.62 -0.48 16 6 C -0.13 -1.48 9.55 36.01 0.34 -1.14 16 7 C -0.16 -2.75 6.22 -39.50 -0.25 -3.00 16 8 Br -0.06 -0.91 31.77 -68.01 -2.16 -3.07 16 9 C 0.03 0.69 9.28 -39.58 -0.37 0.32 16 10 C -0.69 -15.09 5.92 -39.44 -0.23 -15.33 16 11 S 2.54 61.57 5.25 -107.50 -0.56 61.01 16 12 O -0.98 -25.70 16.09 -62.48 -1.01 -26.70 16 13 O -1.01 -25.31 15.53 -57.17 -0.89 -26.20 16 14 N -0.80 -19.51 3.31 -66.68 -0.22 -19.73 16 15 C 0.12 2.78 8.92 59.85 0.53 3.32 16 16 C -0.22 -5.38 7.98 -15.06 -0.12 -5.50 16 17 H 0.12 2.88 7.16 -52.48 -0.38 2.50 16 18 C 0.03 0.67 5.13 -17.43 -0.09 0.58 16 19 N -0.84 -20.04 10.58 55.49 0.59 -19.45 16 20 Si 0.93 18.14 29.57 -169.99 -5.03 13.12 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H 0.06 0.73 7.66 -51.93 -0.40 0.34 16 25 H 0.05 0.62 7.67 -51.92 -0.40 0.22 16 26 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.13 1.81 6.30 -52.49 -0.33 1.48 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.88 6.64 -51.93 -0.34 0.54 16 30 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.15 2.84 7.33 -52.49 -0.38 2.45 16 32 H 0.05 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.07 1.70 7.18 -51.93 -0.37 1.33 16 34 H 0.04 0.94 6.93 -51.93 -0.36 0.59 16 35 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -29.43 322.22 -8.81 -38.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.75 Total: 3.10 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.41 Total: -19.39 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.37 Total: -39.18 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -2.12 Total: -58.68 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 61.57 SS G_CDS: -0.56 Total: 61.01 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -2.16 Total: -3.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.43 -8.81 -38.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939320.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.582 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds