Wall clock time and date at job start Tue Mar 31 2020 06:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47276 * 300.00011 * 3 2 1 6 6 H 1.48496 * 109.47416 * 60.00211 * 3 2 1 7 7 C 1.37885 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99860 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46961 * 179.97438 * 9 7 2 11 11 C 1.46491 * 120.00022 * 275.00000 * 10 9 7 12 12 C 1.53002 * 109.47493 * 85.47994 * 11 10 9 13 13 C 1.53783 * 113.61160 * 271.65200 * 12 11 10 14 14 C 1.53959 * 87.01515 * 220.04378 * 13 12 11 15 15 C 1.53784 * 113.61414 * 174.04190 * 12 11 10 16 16 S 1.65602 * 119.99724 * 94.99699 * 10 9 7 17 17 O 1.42100 * 104.27840 * 330.89113 * 16 10 9 18 18 O 1.42100 * 104.27578 * 203.02879 * 16 10 9 19 19 C 1.81407 * 104.44698 * 86.96274 * 16 10 9 20 20 C 1.50697 * 109.46897 * 176.74499 * 19 16 10 21 21 N 1.29747 * 126.29540 * 269.99836 * 20 19 16 22 22 O 1.41354 * 109.74227 * 180.02562 * 21 20 19 23 23 C 1.34820 * 109.33141 * 359.97438 * 22 21 20 24 24 C 1.38976 * 133.44788 * 180.02562 * 23 22 21 25 25 C 1.37807 * 119.79675 * 180.02562 * 24 23 22 26 26 C 1.38794 * 120.59405 * 359.97438 * 25 24 23 27 27 C 1.36622 * 120.51739 * 359.97438 * 26 25 24 28 28 C 1.39689 * 119.79297 * 0.02562 * 27 26 25 29 29 H 0.97002 * 119.99888 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47494 * 59.99653 * 9 7 2 31 31 H 1.09000 * 109.47083 * 299.99464 * 9 7 2 32 32 H 1.09003 * 109.47397 * 205.47982 * 11 10 9 33 33 H 1.09004 * 109.47196 * 325.47658 * 11 10 9 34 34 H 1.08997 * 112.84611 * 42.84714 * 12 11 10 35 35 H 1.09004 * 113.61486 * 334.56561 * 13 12 11 36 36 H 1.09000 * 113.61319 * 105.47268 * 13 12 11 37 37 H 1.08994 * 113.53785 * 270.80879 * 14 13 12 38 38 H 1.09004 * 113.73939 * 139.94266 * 14 13 12 39 39 H 1.08990 * 113.61278 * 254.52710 * 15 12 11 40 40 H 1.08995 * 113.61340 * 25.35342 * 15 12 11 41 41 H 1.08996 * 109.47238 * 56.74406 * 19 16 10 42 42 H 1.09000 * 109.46694 * 296.74363 * 19 16 10 43 43 H 1.07993 * 120.10419 * 359.97438 * 24 23 22 44 44 H 1.07991 * 119.70552 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.73593 * 179.72239 * 26 25 24 46 46 H 1.07996 * 120.10502 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.7630 -4.0965 -1.2670 12 6 3.9866 -3.2560 -1.6376 13 6 3.6465 -2.0028 -2.4613 14 6 4.9099 -2.3021 -3.2887 15 6 4.7372 -3.7735 -2.8761 16 16 2.6460 -4.3245 1.4254 17 8 2.5301 -3.2841 2.3863 18 8 3.9029 -4.9242 1.1429 19 6 1.3834 -5.5959 1.7083 20 6 1.7248 -6.3748 2.9523 21 7 2.4511 -7.4484 3.0112 22 8 2.5449 -7.8885 4.3511 23 6 1.8487 -7.0510 5.1458 24 6 1.6093 -7.0099 6.5142 25 6 0.8354 -6.0002 7.0439 26 6 0.2921 -5.0218 6.2230 27 6 0.5164 -5.0437 4.8755 28 6 1.2981 -6.0586 4.3184 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8880 32 1 3.0585 -5.1400 -1.1578 33 1 2.0124 -4.0118 -2.0529 34 1 4.6362 -3.0556 -0.7855 35 1 2.7208 -2.0920 -3.0300 36 1 3.7066 -1.0759 -1.8910 37 1 5.8120 -1.8394 -2.8886 38 1 4.7850 -2.1310 -4.3580 39 1 5.6762 -4.2738 -2.6400 40 1 4.1106 -4.3488 -3.5576 41 1 1.3506 -6.2719 0.8539 42 1 0.4105 -5.1203 1.8329 43 1 2.0277 -7.7674 7.1603 44 1 0.6499 -5.9700 8.1074 45 1 -0.3161 -4.2394 6.6523 46 1 0.0901 -4.2793 4.2429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095940425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:35 Heat of formation + Delta-G solvation = 20.620732 kcal Electronic energy + Delta-G solvation = -31305.525566 eV Core-core repulsion = 27098.091891 eV Total energy + Delta-G solvation = -4207.433676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96863 -38.54612 -37.92654 -36.68114 -35.51843 -35.18206 -34.94491 -32.49662 -30.86309 -30.30049 -29.29380 -28.45867 -26.26476 -24.98039 -23.50950 -22.90306 -22.75891 -22.06733 -20.90298 -18.89337 -18.40909 -17.79101 -17.48708 -17.03993 -16.63596 -16.25973 -15.81639 -15.71613 -15.55762 -14.95151 -14.64479 -14.36636 -14.27574 -14.14297 -13.75266 -13.55601 -13.05205 -12.83882 -12.53782 -12.49932 -12.42716 -11.97223 -11.92847 -11.90053 -11.65465 -11.61532 -11.58223 -11.53439 -11.37702 -11.33183 -11.06692 -10.71154 -10.63677 -10.41958 -10.22167 -10.00090 -9.88124 -9.59913 -9.42703 -9.18690 -8.81356 -8.46335 -8.11710 -6.08982 -4.09299 0.22645 0.59632 1.07382 1.83260 2.24091 3.11094 3.28887 3.37528 3.39150 3.42561 3.63246 3.90980 4.24932 4.30470 4.42505 4.52471 4.70505 4.76031 4.96990 5.03202 5.10136 5.13640 5.18620 5.23159 5.25536 5.27596 5.33623 5.52049 5.64375 5.65588 5.86794 5.92966 5.95538 6.01695 6.10270 6.15833 6.22550 6.27632 6.39940 6.43862 6.47119 6.77515 6.95333 6.98930 7.05440 7.10784 7.28252 7.49882 7.90051 8.17305 8.92326 9.54083 11.00240 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.003540 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.328601 B = 7907.602142 C = 9778.360817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.254 3.746 10 N -0.975 5.975 11 C 0.142 3.858 12 C -0.114 4.114 13 C -0.118 4.118 14 C -0.150 4.150 15 C -0.137 4.137 16 S 2.604 3.396 17 O -0.918 6.918 18 O -0.951 6.951 19 C -0.587 4.587 20 C 0.140 3.860 21 N -0.269 5.269 22 O -0.086 6.086 23 C 0.084 3.916 24 C -0.130 4.130 25 C -0.057 4.057 26 C -0.148 4.148 27 C -0.028 4.028 28 C -0.197 4.197 29 H 0.262 0.738 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -11.599 5.531 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.132 3.868 10 N -0.815 5.815 11 C 0.016 3.984 12 C -0.134 4.134 13 C -0.155 4.155 14 C -0.188 4.188 15 C -0.175 4.175 16 S 2.690 3.310 17 O -0.908 6.908 18 O -0.941 6.941 19 C -0.708 4.708 20 C -0.041 4.041 21 N -0.013 5.013 22 O -0.097 6.097 23 C 0.030 3.970 24 C -0.149 4.149 25 C -0.077 4.077 26 C -0.166 4.166 27 C -0.048 4.048 28 C -0.200 4.200 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.736 -12.273 5.452 13.450 hybrid contribution -0.726 1.097 0.118 1.321 sum 0.010 -11.176 5.570 12.487 Atomic orbital electron populations 1.69909 1.05919 1.26858 1.51179 1.24864 0.94785 0.98992 0.95265 0.86576 0.80387 0.83782 0.77562 1.19560 1.21053 1.20973 1.21483 0.93832 0.89955 1.49741 0.91469 1.19178 0.86853 0.82531 0.98239 1.57567 1.59693 1.44386 1.19855 1.21189 0.95007 0.96151 0.86075 1.22834 0.96722 0.97061 0.96818 1.22961 0.96216 0.99272 0.97087 1.22918 0.99617 0.96688 0.99572 1.22913 1.00115 0.96489 0.97983 1.05588 0.75479 0.74954 0.75029 1.93655 1.85975 1.50234 1.60913 1.93574 1.36541 1.79725 1.84268 1.29882 1.23573 1.17909 0.99464 1.23334 0.93633 0.93476 0.93665 1.79956 1.17675 1.11980 0.91644 1.89154 1.62530 1.44456 1.13596 1.20312 0.92842 0.90231 0.93609 1.20045 1.03394 1.01996 0.89510 1.21207 0.93753 0.92263 1.00445 1.20882 1.02478 1.00270 0.92971 1.20676 0.93306 0.94999 0.95802 1.20650 1.07677 1.01341 0.90372 0.92863 0.94371 0.94657 0.91547 0.90484 0.89301 0.90329 0.90076 0.90935 0.92270 0.92071 0.90499 0.82863 0.82254 0.84192 0.84075 0.84284 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.29 55.43 0.74 -23.81 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -12.97 7.34 -34.44 -0.25 -13.22 16 8 H 0.07 1.74 6.24 -52.49 -0.33 1.41 16 9 C 0.25 5.65 5.03 -5.19 -0.03 5.63 16 10 N -0.97 -18.30 2.73 -115.66 -0.32 -18.61 16 11 C 0.14 2.31 5.13 -4.05 -0.02 2.29 16 12 C -0.11 -1.95 3.34 -89.80 -0.30 -2.25 16 13 C -0.12 -2.04 6.32 -25.82 -0.16 -2.20 16 14 C -0.15 -2.16 8.09 -25.82 -0.21 -2.37 16 15 C -0.14 -1.91 7.65 -25.92 -0.20 -2.10 16 16 S 2.60 48.63 5.30 -107.50 -0.57 48.06 16 17 O -0.92 -20.31 17.11 -57.54 -0.98 -21.30 16 18 O -0.95 -19.39 16.88 -57.54 -0.97 -20.37 16 19 C -0.59 -8.34 6.78 36.00 0.24 -8.09 16 20 C 0.14 2.25 6.72 -80.12 -0.54 1.71 16 21 N -0.27 -4.60 12.81 34.91 0.45 -4.16 16 22 O -0.09 -1.38 12.06 7.69 0.09 -1.29 16 23 C 0.08 1.19 7.48 -38.47 -0.29 0.91 16 24 C -0.13 -1.36 10.07 -39.47 -0.40 -1.75 16 25 C -0.06 -0.50 10.02 -39.53 -0.40 -0.90 16 26 C -0.15 -1.49 9.97 -39.96 -0.40 -1.89 16 27 C -0.03 -0.36 10.05 -39.62 -0.40 -0.76 16 28 C -0.20 -2.94 6.33 -105.16 -0.67 -3.61 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 31 H 0.04 0.82 7.70 -51.93 -0.40 0.42 16 32 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 33 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 36 H 0.08 1.62 6.47 -51.93 -0.34 1.28 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.15 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.16 1.87 8.14 -51.92 -0.42 1.44 16 43 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 46 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -32.88 395.81 -11.19 -44.06 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.46 Total: 2.63 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -4.11 Total: -27.07 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.87 Total: -46.58 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.86 Total: -42.95 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 48.63 SS G_CDS: -0.57 Total: 48.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.88 -11.19 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095940425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.685 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds