Wall clock time and date at job start Tue Mar 31 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34634 * 117.00112 * 2 1 4 4 O 1.21510 * 119.99809 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99716 * 179.97438 * 3 2 1 6 6 C 1.46931 * 120.62479 * 180.02562 * 5 3 2 7 7 C 1.53196 * 108.77184 * 233.62992 * 6 5 3 8 8 C 1.53040 * 109.31132 * 305.36785 * 7 6 5 9 9 N 1.46900 * 109.45906 * 181.38681 * 8 7 6 10 10 C 1.46907 * 111.00100 * 153.59843 * 9 8 7 11 11 H 1.09003 * 109.47077 * 37.52516 * 10 9 8 12 12 C 1.52995 * 109.47163 * 157.52223 * 10 9 8 13 13 C 1.50697 * 109.47599 * 294.70787 * 12 10 9 14 14 H 1.08001 * 119.99582 * 4.94733 * 13 12 10 15 15 C 1.37877 * 120.00657 * 184.95428 * 13 12 10 16 16 N 1.31508 * 120.00409 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99546 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46900 * 90.00196 * 17 15 13 19 19 H 1.48500 * 109.47371 * 210.00007 * 17 15 13 20 20 H 1.48502 * 109.47457 * 330.00657 * 17 15 13 21 21 C 1.50701 * 109.47241 * 277.52614 * 10 9 8 22 22 C 1.38262 * 119.94341 * 139.99947 * 21 10 9 23 23 C 1.38150 * 120.05370 * 180.02562 * 22 21 10 24 24 C 1.38734 * 119.94391 * 359.97438 * 23 22 21 25 25 O 1.35898 * 120.05410 * 179.97438 * 24 23 22 26 26 C 1.42896 * 117.00007 * 180.02562 * 25 24 23 27 27 C 1.38733 * 119.88800 * 359.97438 * 24 23 22 28 28 C 1.38143 * 119.94353 * 0.02562 * 27 24 23 29 29 C 1.53037 * 109.54337 * 61.36551 * 8 7 6 30 30 C 1.46920 * 120.63467 * 0.02562 * 5 3 2 31 31 H 1.09005 * 109.46964 * 59.99894 * 1 2 3 32 32 H 1.09003 * 109.47447 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47516 * 299.99804 * 1 2 3 34 34 H 1.08997 * 109.58743 * 113.84425 * 6 5 3 35 35 H 1.08995 * 109.70476 * 353.48472 * 6 5 3 36 36 H 1.09003 * 109.49854 * 185.41532 * 7 6 5 37 37 H 1.08997 * 109.52773 * 65.33196 * 7 6 5 38 38 H 1.09007 * 109.45934 * 301.35458 * 8 7 6 39 39 H 1.00897 * 111.00173 * 29.64744 * 9 8 7 40 40 H 1.09005 * 109.47414 * 54.70451 * 12 10 9 41 41 H 1.08997 * 109.47247 * 174.70301 * 12 10 9 42 42 H 0.97002 * 120.00411 * 179.97438 * 16 15 13 43 43 H 1.08001 * 119.97463 * 0.27476 * 22 21 10 44 44 H 1.07998 * 120.02576 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47610 * 180.02562 * 26 25 24 46 46 H 1.09010 * 109.47105 * 299.99669 * 26 25 24 47 47 H 1.09003 * 109.47503 * 59.99469 * 26 25 24 48 48 H 1.08001 * 120.02802 * 179.97438 * 27 24 23 49 49 H 1.08005 * 119.97072 * 179.97438 * 28 27 24 50 50 H 1.09002 * 109.49753 * 58.58144 * 29 8 7 51 51 H 1.08993 * 109.50210 * 178.68621 * 29 8 7 52 52 H 1.08997 * 109.58839 * 246.16051 * 30 5 3 53 53 H 1.08997 * 109.58233 * 6.44011 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4092 1.2700 0.0005 6 6 4.0905 2.5718 0.0011 7 6 5.0816 2.6100 -1.1664 8 6 6.0234 1.4074 -1.0704 9 7 6.9964 1.4588 -2.1698 10 6 8.2382 0.7631 -1.8067 11 1 7.9997 -0.1217 -1.2164 12 6 8.9782 0.3434 -3.0784 13 6 8.1586 -0.6792 -3.8223 14 1 7.1709 -0.9390 -3.4709 15 6 8.6694 -1.2833 -4.9515 16 7 7.9544 -2.1760 -5.6004 17 14 10.3775 -0.8335 -5.5596 18 1 11.3794 -1.7300 -4.9289 19 1 10.4342 -0.9884 -7.0354 20 1 10.6768 0.5753 -5.1978 21 6 9.1130 1.6858 -0.9978 22 6 9.8168 1.1952 0.0865 23 6 10.6190 2.0392 0.8299 24 6 10.7184 3.3799 0.4875 25 8 11.5064 4.2123 1.2176 26 6 11.5603 5.5801 0.8076 27 6 10.0119 3.8695 -0.6015 28 6 9.2112 3.0214 -1.3417 29 6 5.2125 0.1132 -1.1674 30 6 4.2229 0.0467 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.6274 2.7028 0.9406 35 1 3.3578 3.3702 -0.1154 36 1 5.6623 3.5314 -1.1208 37 1 4.5359 2.5702 -2.1091 38 1 6.5510 1.4346 -0.1170 39 1 7.1827 2.4119 -2.4435 40 1 9.1336 1.2159 -3.7131 41 1 9.9428 -0.0883 -2.8117 42 1 8.3136 -2.6007 -6.3951 43 1 9.7426 0.1505 0.3500 44 1 11.1689 1.6554 1.6765 45 1 12.2234 6.1330 1.4729 46 1 11.9388 5.6388 -0.2130 47 1 10.5603 6.0118 0.8496 48 1 10.0873 4.9129 -0.8699 49 1 8.6607 3.4021 -2.1894 50 1 4.6649 0.0967 -2.1098 51 1 5.8861 -0.7425 -1.1224 52 1 4.7705 -0.0279 0.9400 53 1 3.5756 -0.8226 -0.1151 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095940784.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:12 Heat of formation + Delta-G solvation = -106.125234 kcal Electronic energy + Delta-G solvation = -33454.439129 eV Core-core repulsion = 29097.734132 eV Total energy + Delta-G solvation = -4356.704997 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.73578 -41.17426 -39.85674 -38.76429 -37.42069 -36.57401 -34.88847 -33.51690 -32.15935 -31.99345 -30.58065 -30.50685 -28.49326 -28.05969 -26.19557 -24.96004 -24.39752 -23.66287 -22.88671 -22.24457 -21.06102 -20.74082 -19.17213 -19.11483 -18.78368 -18.15943 -17.56357 -17.29143 -16.68313 -16.59466 -16.25100 -16.13260 -15.82836 -15.68102 -15.41418 -15.25211 -14.88479 -14.79010 -14.60497 -14.42657 -14.31596 -14.17479 -13.90296 -13.63242 -13.43503 -13.39998 -13.12864 -12.93669 -12.88171 -12.73810 -12.50115 -12.32292 -12.23373 -12.18668 -11.88650 -11.79841 -11.75430 -11.64606 -11.55785 -11.31085 -11.29621 -11.11143 -10.63369 -9.92129 -9.85817 -9.10522 -8.95424 -8.13053 -6.10575 0.42563 0.48376 1.15880 1.37941 1.40362 1.50427 1.66938 2.41726 2.44697 2.82092 2.89545 3.18830 3.34408 3.77500 3.84878 3.90505 3.96889 4.02850 4.07990 4.26195 4.32069 4.33854 4.34077 4.36582 4.41315 4.46903 4.51546 4.53251 4.57420 4.65093 4.66706 4.74126 4.75468 4.77704 4.78789 4.86185 4.96586 5.00589 5.12242 5.19705 5.25769 5.28102 5.33464 5.39637 5.44111 5.47826 5.51152 5.72833 5.78603 5.86078 6.21963 6.38751 6.48853 6.55536 6.74477 6.99051 7.15104 7.50183 9.03811 Molecular weight = 362.20amu Principal moments of inertia in cm(-1) A = 0.006258 B = 0.003500 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4473.293951 B = 7997.957076 C =11715.034974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.376 6.376 3 C 0.645 3.355 4 O -0.608 6.608 5 N -0.590 5.590 6 C 0.133 3.867 7 C -0.127 4.127 8 C 0.098 3.902 9 N -0.674 5.674 10 C 0.158 3.842 11 H 0.070 0.930 12 C 0.009 3.991 13 C -0.482 4.482 14 H 0.046 0.954 15 C 0.001 3.999 16 N -0.956 5.956 17 Si 0.935 3.065 18 H -0.272 1.272 19 H -0.292 1.292 20 H -0.253 1.253 21 C -0.146 4.146 22 C -0.081 4.081 23 C -0.157 4.157 24 C 0.109 3.891 25 O -0.335 6.335 26 C 0.019 3.981 27 C -0.201 4.201 28 C -0.084 4.084 29 C -0.116 4.116 30 C 0.121 3.879 31 H 0.057 0.943 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.339 0.661 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.259 0.741 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.148 0.852 49 H 0.129 0.871 50 H 0.045 0.955 51 H 0.066 0.934 52 H 0.092 0.908 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 13.121 17.290 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.289 6.289 3 C 0.399 3.601 4 O -0.500 6.500 5 N -0.329 5.329 6 C 0.012 3.988 7 C -0.165 4.165 8 C -0.012 4.012 9 N -0.305 5.305 10 C 0.048 3.952 11 H 0.089 0.911 12 C -0.029 4.029 13 C -0.521 4.521 14 H 0.065 0.935 15 C -0.194 4.194 16 N -0.599 5.599 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.177 1.177 21 C -0.148 4.148 22 C -0.100 4.100 23 C -0.175 4.175 24 C 0.064 3.936 25 O -0.249 6.249 26 C -0.076 4.076 27 C -0.220 4.220 28 C -0.103 4.103 29 C -0.155 4.155 30 C -0.002 4.002 31 H 0.076 0.924 32 H 0.151 0.849 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.160 0.840 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.165 0.835 49 H 0.147 0.853 50 H 0.064 0.936 51 H 0.085 0.915 52 H 0.110 0.890 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.738 12.716 16.972 21.384 hybrid contribution 0.783 0.437 -0.664 1.116 sum -1.955 13.153 16.308 21.042 Atomic orbital electron populations 1.23480 0.72918 1.05518 1.02510 1.86260 1.25741 1.30195 1.86706 1.18240 0.83621 0.82184 0.76013 1.90935 1.65001 1.35926 1.58146 1.47104 1.01562 1.09590 1.74691 1.21693 0.94809 0.82968 0.99324 1.22059 0.97287 0.98586 0.98610 1.21393 0.92278 0.94599 0.92948 1.60492 1.10994 1.20840 1.38218 1.20238 0.87188 0.93878 0.93890 0.91139 1.19470 0.94571 0.95279 0.93591 1.21295 1.02100 1.19796 1.08866 0.93549 1.25817 1.00963 0.95263 0.97318 1.70060 1.39586 1.30106 1.20162 0.85895 0.81179 0.79878 0.77005 1.19794 1.21890 1.17731 1.20826 1.01138 0.95425 0.97444 1.21030 0.95020 0.99950 0.93953 1.20580 1.02980 0.90980 1.02972 1.19153 0.91955 0.90823 0.91657 1.86030 1.63427 1.21672 1.53776 1.23314 1.03469 0.78610 1.02163 1.21359 1.01600 1.01505 0.97524 1.20862 0.97884 0.92787 0.98735 1.21839 0.97424 0.98567 0.97681 1.21818 0.93309 0.85886 0.99174 0.92434 0.84852 0.91636 0.88858 0.89145 0.88530 0.92341 0.92889 0.83974 0.97050 0.96948 0.93222 0.84699 0.84263 0.86297 0.92185 0.91682 0.83461 0.85325 0.93593 0.91518 0.89024 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 10.56 113.37 1.20 2.07 16 2 O -0.38 -9.35 9.20 -55.43 -0.51 -9.86 16 3 C 0.64 18.32 8.43 129.79 1.09 19.41 16 4 O -0.61 -20.08 15.55 19.81 0.31 -19.78 16 5 N -0.59 -14.69 2.97 -949.19 -2.82 -17.52 16 6 C 0.13 2.85 6.43 86.36 0.56 3.41 16 7 C -0.13 -2.87 5.35 30.67 0.16 -2.70 16 8 C 0.10 2.60 2.26 44.94 0.10 2.70 16 9 N -0.67 -22.03 5.75 -473.16 -2.72 -24.75 16 10 C 0.16 5.56 2.00 44.17 0.09 5.65 16 11 H 0.07 2.60 7.07 -2.39 -0.02 2.58 16 12 C 0.01 0.39 3.69 29.85 0.11 0.50 16 13 C -0.48 -26.71 9.40 25.60 0.24 -26.47 16 14 H 0.05 2.84 7.99 -2.91 -0.02 2.81 16 15 C 0.00 0.08 5.47 84.66 0.46 0.54 16 16 N -0.96 -60.18 13.96 21.45 0.30 -59.88 16 17 Si 0.93 44.87 27.37 68.60 1.88 46.75 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.25 -11.42 6.69 99.48 0.67 -10.76 16 21 C -0.15 -4.27 4.48 -19.85 -0.09 -4.36 16 22 C -0.08 -2.17 9.66 22.25 0.22 -1.95 16 23 C -0.16 -3.86 9.99 22.37 0.22 -3.63 16 24 C 0.11 2.62 6.69 22.51 0.15 2.77 16 25 O -0.33 -7.21 10.50 -92.40 -0.97 -8.18 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 C -0.20 -4.55 9.04 22.37 0.20 -4.35 16 28 C -0.08 -2.18 9.14 22.25 0.20 -1.98 16 29 C -0.12 -3.40 5.59 30.68 0.17 -3.22 16 30 C 0.12 2.80 6.45 86.38 0.56 3.36 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 32 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 2.07 7.01 -2.39 -0.02 2.05 16 36 H 0.10 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.32 7.53 -2.38 -0.02 1.31 16 39 H 0.34 10.01 5.99 -89.70 -0.54 9.48 16 40 H 0.01 0.51 7.54 -2.38 -0.02 0.49 16 41 H 0.01 0.56 7.30 -2.39 -0.02 0.54 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.14 3.33 8.04 -2.91 -0.02 3.31 16 44 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 45 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 0.72 7.66 -2.38 -0.02 0.70 16 47 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 48 H 0.15 2.51 6.30 -2.91 -0.02 2.50 16 49 H 0.13 3.12 6.50 -2.91 -0.02 3.10 16 50 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.07 2.17 7.48 -2.39 -0.02 2.15 16 52 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.09 2.16 6.92 -2.39 -0.02 2.15 16 Total: -1.00 -74.60 421.21 2.56 -72.04 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.33 Total: 28.09 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 6.76 Total: -6.91 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.24 Total: -102.14 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.17 Total: -37.82 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -74.60 2.56 -72.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095940784.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.083 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds