Wall clock time and date at job start Tue Mar 31 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46603 * 2 1 4 4 C 1.50700 * 109.47136 * 119.99598 * 2 1 3 5 5 H 1.08003 * 119.99850 * 120.00476 * 4 2 1 6 6 C 1.37879 * 120.00466 * 300.00464 * 4 2 1 7 7 N 1.31516 * 119.99491 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00196 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47308 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47168 * 119.99951 * 8 6 4 11 11 H 1.48503 * 109.46992 * 239.99732 * 8 6 4 12 12 S 1.81396 * 109.47317 * 240.00217 * 2 1 3 13 13 C 1.76192 * 103.00123 * 71.45033 * 12 2 1 14 14 C 1.38782 * 120.10751 * 6.10165 * 13 12 2 15 15 C 1.38193 * 119.99470 * 179.97438 * 14 13 12 16 16 C 1.38309 * 120.19517 * 0.02562 * 15 14 13 17 17 C 1.38243 * 120.21025 * 359.97438 * 16 15 14 18 18 C 1.38650 * 120.01072 * 0.02562 * 17 16 15 19 19 N 1.40139 * 120.10234 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99470 * 20.01925 * 19 18 17 21 21 O 1.21294 * 120.00284 * 6.02108 * 20 19 18 22 22 C 1.50709 * 119.99863 * 186.02048 * 20 19 18 23 23 S 1.80998 * 109.47206 * 180.02562 * 22 20 19 24 24 C 1.76195 * 99.99971 * 180.02562 * 23 22 20 25 25 N 1.31654 * 126.08755 * 359.69344 * 24 23 22 26 26 C 1.33341 * 109.69168 * 179.83093 * 25 24 23 27 27 N 1.30584 * 109.14018 * 0.43586 * 26 25 24 28 28 N 1.35071 * 126.09077 * 180.02562 * 24 23 22 29 29 H 0.97005 * 126.83248 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.47570 * 59.90149 * 1 2 3 31 31 H 1.09007 * 109.47102 * 179.89924 * 1 2 3 32 32 H 1.09003 * 109.47118 * 299.89591 * 1 2 3 33 33 H 0.96998 * 119.99529 * 180.02562 * 7 6 4 34 34 H 1.08006 * 120.00387 * 359.95679 * 14 13 12 35 35 H 1.07994 * 119.90798 * 179.97438 * 15 14 13 36 36 H 1.07999 * 119.89024 * 179.70308 * 16 15 14 37 37 H 1.08001 * 119.99421 * 179.97438 * 17 16 15 38 38 H 0.96996 * 120.00107 * 200.02110 * 19 18 17 39 39 H 1.09001 * 109.46862 * 300.00651 * 22 20 19 40 40 H 1.08997 * 109.46789 * 59.99783 * 22 20 19 41 41 H 1.08005 * 125.42659 * 180.17579 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1485 -2.2854 3.6039 10 1 3.1472 -0.1855 4.8161 11 1 1.1678 -1.5865 4.8166 12 16 2.1347 -0.8550 -1.4811 13 6 1.7519 0.2766 -2.7762 14 6 1.2464 1.5337 -2.4755 15 6 0.9475 2.4196 -3.4930 16 6 1.1500 2.0576 -4.8124 17 6 1.6532 0.8076 -5.1214 18 6 1.9560 -0.0881 -4.1073 19 7 2.4667 -1.3556 -4.4183 20 6 3.0387 -1.5756 -5.6186 21 8 3.2104 -0.6528 -6.3869 22 6 3.4650 -2.9682 -6.0063 23 16 4.1940 -2.9369 -7.6627 24 6 4.5900 -4.6429 -7.8549 25 7 4.3765 -5.5932 -6.9691 26 6 4.7979 -6.7619 -7.4534 27 7 5.2937 -6.5769 -8.6473 28 7 5.1724 -5.2078 -8.9348 29 1 5.4509 -4.7573 -9.7476 30 1 -0.3634 0.5153 -0.8891 31 1 -0.3634 -1.0277 -0.0018 32 1 -0.3633 0.5122 0.8909 33 1 0.7094 1.1618 3.4844 34 1 1.0864 1.8194 -1.4462 35 1 0.5538 3.3973 -3.2574 36 1 0.9102 2.7521 -5.6040 37 1 1.8096 0.5284 -6.1529 38 1 2.4084 -2.0744 -3.7697 39 1 4.2024 -3.3344 -5.2919 40 1 2.5973 -3.6278 -6.0031 41 1 4.7421 -7.7097 -6.9386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:40 Heat of formation + Delta-G solvation = 84.527231 kcal Electronic energy + Delta-G solvation = -26062.860861 eV Core-core repulsion = 22197.410906 eV Total energy + Delta-G solvation = -3865.449954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32082 -40.61483 -38.24783 -34.94717 -34.18708 -33.00081 -31.81066 -31.23875 -30.97091 -30.02112 -28.59628 -25.43381 -23.87934 -23.09768 -22.53608 -22.44569 -21.37143 -20.58648 -19.37732 -18.11187 -17.27712 -16.95127 -16.52613 -16.27445 -16.12551 -15.75031 -15.30665 -15.00177 -14.74489 -14.58978 -14.26935 -14.05230 -13.75658 -13.41023 -13.36574 -12.70131 -12.67535 -12.54704 -12.04010 -11.83750 -11.52844 -11.26225 -11.12234 -11.10449 -10.84600 -10.69813 -10.66912 -10.60669 -10.59234 -10.51509 -10.16412 -9.83726 -9.50489 -9.21329 -9.03297 -8.58399 -8.28745 -8.05873 -6.65217 -6.28793 -4.38090 0.41120 1.01665 1.36104 1.38891 1.64230 2.32498 2.38679 2.42175 2.44364 2.91335 3.16798 3.25316 3.29710 3.52005 4.04673 4.18254 4.24137 4.27364 4.38978 4.60661 4.94535 5.03774 5.22398 5.29380 5.51260 5.65186 5.69980 5.75507 5.94464 6.12399 6.35815 6.36846 6.47393 6.51346 6.62925 6.66158 6.71666 6.81742 7.20661 7.25306 7.26535 7.47756 7.53133 7.69910 7.81140 7.93252 8.61164 9.26724 10.77258 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.002274 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.521110 B =12311.440641 C =14601.322929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.102 3.898 3 H 0.053 0.947 4 C -0.511 4.511 5 H 0.068 0.932 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.176 6.176 13 C -0.090 4.090 14 C -0.113 4.113 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.123 4.123 18 C 0.146 3.854 19 N -0.647 5.647 20 C 0.532 3.468 21 O -0.511 6.511 22 C -0.145 4.145 23 S 0.093 5.907 24 C 0.244 3.756 25 N -0.542 5.542 26 C 0.215 3.785 27 N -0.312 5.312 28 N -0.464 5.464 29 H 0.445 0.555 30 H 0.020 0.980 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.266 0.734 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.418 0.582 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -6.411 -19.586 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.551 4.551 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.734 3.266 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.072 5.928 13 C -0.205 4.205 14 C -0.138 4.138 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.145 4.145 18 C 0.045 3.955 19 N -0.291 5.291 20 C 0.317 3.683 21 O -0.388 6.388 22 C -0.297 4.297 23 S 0.319 5.681 24 C -0.142 4.142 25 N -0.276 5.276 26 C -0.090 4.090 27 N -0.142 5.142 28 N -0.184 5.184 29 H 0.292 0.708 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.256 0.744 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.115 -6.554 -20.751 22.147 hybrid contribution -0.388 -0.296 1.744 1.811 sum 3.727 -6.850 -19.007 20.544 Atomic orbital electron populations 1.22121 0.96173 1.00706 1.01225 1.21115 0.95651 0.97334 0.88456 0.92929 1.20661 1.32592 1.13296 0.88539 0.91406 1.24892 0.94616 0.94945 0.98906 1.69864 1.35812 1.22453 1.24135 0.86290 0.78730 0.79643 0.81985 1.19455 1.20699 1.20684 1.85009 1.76316 1.29382 1.02140 1.21721 1.04792 0.98861 0.95163 1.21298 0.99680 0.92152 1.00648 1.21066 1.00687 0.99395 0.92682 1.20961 1.00790 0.96328 0.96279 1.21397 0.99798 0.93662 0.99616 1.17214 1.00784 0.85710 0.91807 1.43325 1.56775 1.12382 1.16596 1.19628 0.77577 0.89142 0.81936 1.90680 1.53632 1.43631 1.50873 1.23729 1.07441 0.99390 0.99141 1.86410 1.73976 0.89169 1.18532 1.26835 0.97457 1.02134 0.87741 1.71089 1.28001 0.98446 1.30020 1.26092 0.94632 0.98025 0.90273 1.77946 1.25928 0.91703 1.18606 1.47865 1.47992 1.05977 1.16611 0.70849 0.96138 0.94092 0.88630 0.92402 0.84379 0.86126 0.86108 0.83222 0.74354 0.84790 0.84817 0.76104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.58 37.16 0.32 -2.87 16 2 C 0.10 2.37 1.97 -27.88 -0.05 2.31 16 3 H 0.05 1.32 6.74 -51.92 -0.35 0.97 16 4 C -0.51 -13.14 8.58 -34.44 -0.30 -13.43 16 5 H 0.07 1.76 7.71 -52.48 -0.40 1.35 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -23.34 11.32 55.43 0.63 -22.71 16 8 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 S -0.18 -3.48 19.86 -107.50 -2.14 -5.62 16 13 C -0.09 -1.62 6.05 -38.90 -0.24 -1.86 16 14 C -0.11 -2.00 8.12 -39.40 -0.32 -2.32 16 15 C -0.12 -1.76 10.04 -39.57 -0.40 -2.16 16 16 C -0.12 -1.71 10.04 -39.55 -0.40 -2.11 16 17 C -0.12 -1.88 8.77 -39.43 -0.35 -2.22 16 18 C 0.15 2.34 6.51 -83.43 -0.54 1.80 16 19 N -0.65 -8.66 5.23 -9.70 -0.05 -8.71 16 20 C 0.53 6.42 7.69 -10.98 -0.08 6.33 16 21 O -0.51 -7.35 12.80 5.55 0.07 -7.28 16 22 C -0.15 -1.29 5.70 36.01 0.21 -1.08 16 23 S 0.09 0.81 21.45 -107.50 -2.31 -1.49 16 24 C 0.24 2.27 8.31 -89.38 -0.74 1.53 16 25 N -0.54 -5.55 10.58 -14.70 -0.16 -5.70 16 26 C 0.21 1.93 13.02 -91.83 -1.20 0.73 16 27 N -0.31 -3.04 12.78 29.29 0.37 -2.67 16 28 N -0.46 -3.85 7.47 30.45 0.23 -3.62 16 29 H 0.44 2.33 8.96 -182.35 -1.63 0.69 16 30 H 0.02 0.41 6.25 -51.93 -0.32 0.08 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.14 2.62 4.96 -52.48 -0.26 2.36 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.15 2.22 5.46 -52.49 -0.29 1.93 16 38 H 0.42 5.14 7.52 -40.82 -0.31 4.84 16 39 H 0.13 1.08 8.14 -51.91 -0.42 0.66 16 40 H 0.13 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.22 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -30.33 371.61 -12.50 -42.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.55 Total: 7.92 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -4.18 Total: -13.63 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 1.02 Total: -43.42 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.07 Total: -7.28 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -4.44 Total: -7.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.33 -12.50 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.366 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds