Wall clock time and date at job start Tue Mar 31 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46849 * 2 1 4 4 C 1.50700 * 109.47118 * 239.99707 * 2 1 3 5 5 H 1.08003 * 119.99994 * 239.99925 * 4 2 1 6 6 C 1.37871 * 119.99865 * 60.00237 * 4 2 1 7 7 N 1.31519 * 120.00320 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99871 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47253 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47110 * 119.99886 * 8 6 4 11 11 H 1.48500 * 109.47174 * 239.99588 * 8 6 4 12 12 S 1.81400 * 109.46963 * 119.99640 * 2 1 3 13 13 C 1.76197 * 103.00096 * 289.65910 * 12 2 1 14 14 C 1.38786 * 120.10849 * 354.25608 * 13 12 2 15 15 C 1.38194 * 119.99165 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.20150 * 0.02562 * 15 14 13 17 17 C 1.38248 * 120.20768 * 359.97438 * 16 15 14 18 18 C 1.38650 * 120.01081 * 0.29870 * 17 16 15 19 19 N 1.40138 * 120.10032 * 179.72343 * 18 17 16 20 20 C 1.34774 * 120.00016 * 33.91507 * 19 18 17 21 21 O 1.21296 * 120.00411 * 5.72723 * 20 19 18 22 22 C 1.50700 * 120.00229 * 185.71648 * 20 19 18 23 23 S 1.80997 * 109.47472 * 180.02562 * 22 20 19 24 24 C 1.76201 * 100.00320 * 180.02562 * 23 22 20 25 25 N 1.31647 * 126.08384 * 359.69240 * 24 23 22 26 26 C 1.33343 * 109.68897 * 179.83252 * 25 24 23 27 27 N 1.30588 * 109.14256 * 0.43505 * 26 25 24 28 28 N 1.35074 * 126.08896 * 180.02562 * 24 23 22 29 29 H 0.96997 * 126.83357 * 359.97438 * 28 24 23 30 30 H 1.09003 * 109.46885 * 304.85999 * 1 2 3 31 31 H 1.09002 * 109.46982 * 64.85840 * 1 2 3 32 32 H 1.08998 * 109.47024 * 184.85921 * 1 2 3 33 33 H 0.96997 * 119.99882 * 180.02562 * 7 6 4 34 34 H 1.08003 * 119.99994 * 359.95747 * 14 13 12 35 35 H 1.08007 * 119.89533 * 180.02562 * 15 14 13 36 36 H 1.07993 * 119.89521 * 180.02562 * 16 15 14 37 37 H 1.08002 * 119.99230 * 180.02562 * 17 16 15 38 38 H 0.97001 * 120.00306 * 213.92705 * 19 18 17 39 39 H 1.09002 * 109.47491 * 300.00837 * 22 20 19 40 40 H 1.09002 * 109.46916 * 60.00425 * 22 20 19 41 41 H 1.08006 * 125.42898 * 180.17648 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5868 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 16 2.1347 -0.8550 1.4812 13 6 1.7223 0.2621 2.7799 14 6 1.1928 1.5101 2.4828 15 6 0.8697 2.3841 3.5032 16 6 1.0727 2.0197 4.8218 17 6 1.5996 0.7786 5.1271 18 6 1.9322 -0.1030 4.1100 19 7 2.4718 -1.3593 4.4172 20 6 2.0790 -2.0071 5.5318 21 8 1.1847 -1.5531 6.2139 22 6 2.7508 -3.2958 5.9307 23 16 2.0058 -3.9168 7.4589 24 6 2.9534 -5.3847 7.6868 25 7 3.9121 -5.8193 6.8962 26 6 4.4109 -6.9579 7.3788 27 7 3.7756 -7.2728 8.4754 28 7 2.8211 -6.2677 8.7004 29 1 2.1924 -6.2173 9.4373 30 1 -0.3633 0.5874 0.8433 31 1 -0.3633 0.4366 -0.9303 32 1 -0.3633 -1.0240 0.0870 33 1 0.7083 1.1607 -3.4844 34 1 1.0336 1.7982 1.4541 35 1 0.4573 3.3548 3.2703 36 1 0.8181 2.7065 5.6153 37 1 1.7564 0.4974 6.1581 38 1 3.1282 -1.7625 3.8278 39 1 2.6221 -4.0331 5.1383 40 1 3.8140 -3.1167 6.0911 41 1 5.2098 -7.5307 6.9315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:43 Heat of formation + Delta-G solvation = 81.046763 kcal Electronic energy + Delta-G solvation = -26101.757221 eV Core-core repulsion = 22236.156342 eV Total energy + Delta-G solvation = -3865.600879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.30793 -40.49991 -38.27429 -34.90598 -34.18382 -32.98684 -31.79051 -31.22431 -30.95924 -30.01403 -28.61563 -25.43349 -23.86824 -23.02959 -22.54634 -22.43383 -21.37122 -20.53496 -19.37954 -18.10531 -17.24582 -16.94778 -16.51986 -16.23370 -16.13212 -15.72851 -15.29159 -14.98425 -14.74523 -14.59581 -14.29542 -14.10611 -13.72881 -13.42366 -13.21721 -12.83695 -12.54527 -12.54153 -12.04950 -11.81317 -11.39857 -11.22757 -11.13953 -11.08528 -10.83189 -10.68592 -10.67496 -10.60796 -10.58949 -10.40222 -10.16850 -9.98443 -9.50223 -9.23423 -9.01574 -8.57199 -8.27363 -8.12350 -6.65666 -6.28408 -4.38184 0.43170 1.02985 1.37297 1.41694 1.61926 2.34278 2.38308 2.43297 2.45726 2.95592 3.16827 3.25347 3.29690 3.53125 4.01405 4.20331 4.24259 4.29548 4.41091 4.62832 4.97135 5.03791 5.18311 5.27422 5.49758 5.66297 5.69424 5.74563 5.95559 6.11115 6.38128 6.38363 6.42786 6.49674 6.62581 6.67539 6.74438 6.78780 7.16008 7.24067 7.26162 7.48918 7.54070 7.70447 7.86608 7.94884 8.61134 9.26694 10.77307 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.002323 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.003596 B =12052.749706 C =14320.916547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.511 4.511 5 H 0.068 0.932 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.170 6.170 13 C -0.083 4.083 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.105 4.105 18 C 0.143 3.857 19 N -0.651 5.651 20 C 0.533 3.467 21 O -0.513 6.513 22 C -0.144 4.144 23 S 0.093 5.907 24 C 0.245 3.755 25 N -0.543 5.543 26 C 0.215 3.785 27 N -0.312 5.312 28 N -0.464 5.464 29 H 0.445 0.555 30 H 0.021 0.979 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.417 0.583 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -6.191 19.366 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.550 4.550 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.078 5.922 13 C -0.199 4.199 14 C -0.141 4.141 15 C -0.133 4.133 16 C -0.147 4.147 17 C -0.126 4.126 18 C 0.042 3.958 19 N -0.297 5.297 20 C 0.318 3.682 21 O -0.388 6.388 22 C -0.296 4.296 23 S 0.319 5.681 24 C -0.141 4.141 25 N -0.276 5.276 26 C -0.091 4.091 27 N -0.142 5.142 28 N -0.185 5.185 29 H 0.291 0.709 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.254 0.746 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.803 -7.016 20.399 21.753 hybrid contribution 0.595 0.125 -1.604 1.716 sum 3.398 -6.891 18.795 20.304 Atomic orbital electron populations 1.22140 0.96199 1.00090 1.02010 1.21113 0.95712 0.97327 0.88565 0.92991 1.20657 1.32544 1.13273 0.88546 0.91420 1.24893 0.94630 0.94948 0.98907 1.69861 1.35752 1.22509 1.24131 0.86294 0.78742 0.79637 0.81995 1.19452 1.20691 1.20686 1.85078 1.75197 1.30402 1.01558 1.21849 1.03172 0.99208 0.95627 1.21342 0.99647 0.92460 1.00697 1.21064 1.00206 0.99418 0.92565 1.20900 1.01245 0.96129 0.96376 1.20891 1.00446 0.92837 0.98434 1.17093 1.01874 0.85118 0.91669 1.43261 1.43617 1.18128 1.24657 1.19619 0.82815 0.84544 0.81234 1.90771 1.28837 1.67126 1.52111 1.23716 1.05666 0.99607 1.00631 1.86441 1.40261 1.12217 1.29211 1.26846 0.98886 0.98966 0.89429 1.71086 1.12397 1.14200 1.29902 1.26089 0.99287 0.92773 0.90901 1.77945 1.04988 1.10741 1.20536 1.47863 1.30799 1.17086 1.22709 0.70852 0.96048 0.88443 0.94222 0.92394 0.84299 0.86035 0.86067 0.85124 0.74579 0.84785 0.84911 0.76122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.65 37.16 0.32 -2.98 16 2 C 0.10 2.34 1.97 -27.88 -0.06 2.29 16 3 H 0.05 1.30 6.83 -51.92 -0.35 0.94 16 4 C -0.51 -13.14 8.58 -34.44 -0.30 -13.44 16 5 H 0.07 1.75 7.71 -52.48 -0.40 1.35 16 6 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 7 N -0.89 -23.38 11.29 55.43 0.63 -22.75 16 8 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 S -0.17 -3.39 20.09 -107.50 -2.16 -5.55 16 13 C -0.08 -1.50 6.07 -38.90 -0.24 -1.73 16 14 C -0.12 -2.05 8.11 -39.39 -0.32 -2.37 16 15 C -0.11 -1.66 10.04 -39.58 -0.40 -2.06 16 16 C -0.12 -1.72 10.04 -39.56 -0.40 -2.12 16 17 C -0.10 -1.56 8.65 -39.43 -0.34 -1.90 16 18 C 0.14 2.28 6.28 -83.43 -0.52 1.75 16 19 N -0.65 -8.66 5.03 -9.71 -0.05 -8.71 16 20 C 0.53 6.57 7.58 -10.99 -0.08 6.49 16 21 O -0.51 -7.71 13.62 5.54 0.08 -7.63 16 22 C -0.14 -1.31 5.70 36.01 0.21 -1.10 16 23 S 0.09 0.84 21.45 -107.50 -2.31 -1.47 16 24 C 0.24 2.32 8.31 -89.38 -0.74 1.58 16 25 N -0.54 -5.61 10.58 -14.69 -0.16 -5.77 16 26 C 0.21 1.95 13.02 -91.83 -1.20 0.75 16 27 N -0.31 -3.09 12.78 29.29 0.37 -2.71 16 28 N -0.46 -3.93 7.47 30.45 0.23 -3.71 16 29 H 0.44 2.42 8.96 -182.35 -1.63 0.78 16 30 H 0.02 0.44 6.05 -51.93 -0.31 0.12 16 31 H 0.10 2.42 5.95 -51.93 -0.31 2.12 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.14 2.63 4.85 -52.48 -0.25 2.37 16 35 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.86 6.48 -52.49 -0.34 1.52 16 38 H 0.42 4.94 7.96 -40.82 -0.32 4.62 16 39 H 0.13 1.13 8.14 -51.91 -0.42 0.70 16 40 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.22 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -30.69 373.15 -12.53 -43.22 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.61 Total: 7.50 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -4.15 Total: -13.12 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 1.02 Total: -43.65 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.08 Total: -7.63 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -4.47 Total: -7.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.69 -12.53 -43.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.267 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds