Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46859 * 2 1 4 4 O 1.42893 * 109.47280 * 240.00172 * 2 1 3 5 5 C 1.42893 * 114.00352 * 90.00030 * 4 2 1 6 6 C 1.52996 * 109.47459 * 179.97438 * 5 4 2 7 7 F 1.39904 * 109.47090 * 60.00040 * 6 5 4 8 8 F 1.39902 * 109.47579 * 179.97438 * 6 5 4 9 9 F 1.39903 * 109.47407 * 300.00388 * 6 5 4 10 10 C 1.50703 * 109.46881 * 119.99663 * 2 1 3 11 11 O 1.21296 * 119.99667 * 115.00161 * 10 2 1 12 12 N 1.34774 * 120.00463 * 295.00202 * 10 2 1 13 13 C 1.40133 * 120.00025 * 185.52339 * 12 10 2 14 14 C 1.38641 * 120.10311 * 24.81460 * 13 12 10 15 15 C 1.38248 * 120.01146 * 180.02562 * 14 13 12 16 16 C 1.38301 * 120.20973 * 0.02562 * 15 14 13 17 17 C 1.38187 * 120.19847 * 359.97438 * 16 15 14 18 18 C 1.38790 * 119.99257 * 0.02562 * 17 16 15 19 19 S 1.76193 * 120.10614 * 179.97438 * 18 17 16 20 20 C 1.81397 * 103.00345 * 0.02562 * 19 18 17 21 21 C 1.50693 * 109.47592 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99935 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00190 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00070 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99865 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47282 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47128 * 119.99908 * 25 23 21 28 28 H 1.48501 * 109.47026 * 239.99773 * 25 23 21 29 29 H 1.08998 * 109.46890 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47177 * 300.00608 * 1 2 3 31 31 H 1.09002 * 109.46529 * 59.99750 * 1 2 3 32 32 H 1.08993 * 109.47366 * 300.00277 * 5 4 2 33 33 H 1.09000 * 109.47022 * 60.00009 * 5 4 2 34 34 H 0.97002 * 119.99281 * 5.52939 * 12 10 2 35 35 H 1.08000 * 119.99500 * 0.04626 * 14 13 12 36 36 H 1.08003 * 119.89424 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.89635 * 180.27391 * 16 15 14 38 38 H 1.08006 * 120.00536 * 180.02562 * 17 16 15 39 39 H 1.09004 * 109.46954 * 299.99811 * 20 19 18 40 40 H 1.09005 * 109.47245 * 59.99548 * 20 19 18 41 41 H 0.97001 * 119.99564 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7092 -0.6405 -3.4787 7 9 1.7703 -1.6271 -3.7986 8 9 2.8984 0.1979 -4.5826 9 9 3.9239 -1.2457 -3.1385 10 6 2.0323 -0.7104 1.2305 11 8 2.6531 -1.7468 1.1216 12 7 1.7919 -0.1942 2.4521 13 6 2.3561 -0.7901 3.5880 14 6 3.5178 -1.5384 3.4763 15 6 4.0725 -2.1259 4.5981 16 6 3.4718 -1.9704 5.8341 17 6 2.3136 -1.2264 5.9554 18 6 1.7497 -0.6329 4.8347 19 16 0.2727 0.3158 4.9858 20 6 -0.0979 0.2145 6.7586 21 6 -1.3562 0.9893 7.0540 22 1 -1.8803 1.4928 6.2551 23 6 -1.8377 1.0564 8.3442 24 7 -1.1992 0.4437 9.3171 25 14 -3.3971 2.0176 8.7103 26 1 -3.9201 2.6100 7.4531 27 1 -4.4161 1.1058 9.2898 28 1 -3.0945 3.1014 9.6793 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.2540 0.6547 -2.5588 33 1 2.9321 0.9513 -2.0449 34 1 1.2282 0.5898 2.5448 35 1 3.9898 -1.6621 2.5128 36 1 4.9778 -2.7081 4.5090 37 1 3.9118 -2.4279 6.7079 38 1 1.8473 -1.1067 6.9222 39 1 -0.2394 -0.8288 7.0412 40 1 0.7308 0.6358 7.3277 41 1 -1.5383 0.4906 10.2247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = -210.458606 kcal Electronic energy + Delta-G solvation = -29358.628627 eV Core-core repulsion = 24528.910675 eV Total energy + Delta-G solvation = -4829.717951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.45075 -48.02025 -47.88442 -40.76098 -38.96939 -37.77289 -34.84496 -33.33489 -32.56195 -30.81475 -29.89054 -29.08547 -28.66361 -25.07133 -23.75283 -23.44943 -22.80830 -22.07256 -20.38515 -19.04884 -18.94888 -18.59515 -18.07165 -17.20681 -16.96775 -16.50037 -16.30633 -15.97432 -15.26432 -15.08154 -15.00112 -14.82657 -14.67138 -14.41977 -14.35581 -14.07058 -14.06351 -14.02654 -13.57071 -13.53848 -13.24363 -13.06566 -12.89144 -12.72889 -12.45178 -12.33367 -12.19302 -11.83999 -11.73291 -11.27727 -11.02877 -10.81682 -10.64460 -10.47373 -10.12813 -9.75603 -9.67016 -9.29292 -9.24091 -8.71282 -8.08423 -6.67943 -6.34324 -4.40474 1.40258 1.62695 1.86659 2.28588 2.44140 2.60301 3.15715 3.17421 3.23666 3.27599 3.40278 3.52324 3.55680 4.02364 4.04861 4.22283 4.24258 4.38443 4.43014 4.46300 4.59475 5.03504 5.14238 5.20140 5.24381 5.29764 5.51111 5.70002 5.73856 5.75945 6.11577 6.15036 6.39103 6.49187 6.64080 6.80601 6.86927 6.90528 7.21680 7.32189 7.58105 7.80776 7.95221 8.60583 9.24025 10.76786 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.002110 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.352238 B =13264.828919 C =14966.892786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.098 0.902 4 O -0.341 6.341 5 C 0.014 3.986 6 C 0.463 3.537 7 F -0.174 7.174 8 F -0.177 7.177 9 F -0.173 7.173 10 C 0.513 3.487 11 O -0.497 6.497 12 N -0.655 5.655 13 C 0.149 3.851 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.094 4.094 19 S -0.172 6.172 20 C 0.078 3.922 21 C -0.520 4.520 22 H 0.069 0.931 23 C 0.068 3.932 24 N -0.888 5.888 25 Si 0.908 3.092 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.414 0.586 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 1.402 -20.880 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.116 0.884 4 O -0.259 6.259 5 C -0.065 4.065 6 C 0.409 3.591 7 F -0.156 7.156 8 F -0.159 7.159 9 F -0.154 7.154 10 C 0.299 3.701 11 O -0.371 6.371 12 N -0.301 5.301 13 C 0.049 3.951 14 C -0.139 4.139 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.139 4.139 18 C -0.210 4.210 19 S 0.074 5.926 20 C -0.068 4.068 21 C -0.559 4.559 22 H 0.087 0.913 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.735 3.265 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.252 0.748 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.748 1.072 -21.674 23.042 hybrid contribution -0.349 0.312 1.221 1.307 sum 7.398 1.384 -20.454 21.795 Atomic orbital electron populations 1.22318 0.92226 1.04872 1.04042 1.21988 0.95981 0.96336 0.84176 0.88407 1.88061 1.86996 1.32463 1.18375 1.23647 1.03952 0.92844 0.86064 1.20075 0.76232 0.78991 0.83795 1.93232 1.64876 1.63836 1.93606 1.93214 1.95269 1.71444 1.55957 1.93246 1.45724 1.84394 1.92025 1.20250 0.80454 0.85481 0.83919 1.90718 1.38528 1.21840 1.85986 1.43372 1.50438 1.31927 1.04389 1.17160 0.93900 0.99624 0.84434 1.21204 0.94030 0.98513 1.00123 1.20958 1.00280 1.00810 0.92203 1.21054 0.95882 0.99205 0.97520 1.21238 0.96695 0.98018 0.97938 1.21790 1.00491 1.03955 0.94723 1.84938 1.23741 1.61924 1.22024 1.21376 1.00808 1.01322 0.83310 1.20632 1.08069 1.33105 0.94134 0.91302 1.24957 0.97726 0.95429 0.95547 1.69948 1.39514 1.42203 1.00838 0.86267 0.82089 0.79543 0.78591 1.19393 1.20607 1.20622 0.90320 0.89760 0.90729 0.88156 0.88233 0.74841 0.83956 0.86035 0.86026 0.84636 0.93655 0.93680 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.47 37.16 0.35 -0.98 16 2 C 0.08 0.68 3.13 -27.88 -0.09 0.59 16 3 H 0.10 0.53 7.79 -51.93 -0.40 0.13 16 4 O -0.34 -3.49 9.41 -55.09 -0.52 -4.01 16 5 C 0.01 0.09 5.71 37.16 0.21 0.30 16 6 C 0.46 3.91 3.32 37.16 0.12 4.03 16 7 F -0.17 -1.76 17.26 2.25 0.04 -1.72 16 8 F -0.18 -1.37 17.32 2.25 0.04 -1.33 16 9 F -0.17 -1.83 17.26 2.25 0.04 -1.79 16 10 C 0.51 6.76 6.99 -10.99 -0.08 6.68 16 11 O -0.50 -8.38 13.68 -14.31 -0.20 -8.58 16 12 N -0.66 -8.88 5.14 -9.71 -0.05 -8.93 16 13 C 0.15 2.45 6.44 -83.43 -0.54 1.91 16 14 C -0.12 -1.85 8.72 -39.43 -0.34 -2.20 16 15 C -0.12 -1.75 10.04 -39.55 -0.40 -2.14 16 16 C -0.12 -1.76 10.04 -39.58 -0.40 -2.16 16 17 C -0.11 -2.03 9.36 -39.40 -0.37 -2.40 16 18 C -0.09 -1.71 6.12 -38.90 -0.24 -1.95 16 19 S -0.17 -3.39 20.55 -107.50 -2.21 -5.60 16 20 C 0.08 1.89 4.09 36.00 0.15 2.04 16 21 C -0.52 -13.63 9.13 -34.44 -0.31 -13.95 16 22 H 0.07 1.78 7.71 -52.48 -0.40 1.38 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 25 Si 0.91 20.22 29.54 -169.99 -5.02 15.19 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.59 7.76 -51.93 -0.40 0.19 16 31 H 0.07 0.38 7.87 -51.93 -0.41 -0.02 16 32 H 0.10 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.41 4.89 7.25 -40.82 -0.30 4.60 16 35 H 0.14 2.25 5.79 -52.49 -0.30 1.94 16 36 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.14 2.56 5.88 -52.48 -0.31 2.26 16 39 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 40 H 0.05 1.13 7.75 -51.92 -0.40 0.73 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -31.48 376.83 -8.05 -39.53 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.57 Total: 3.84 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.02 Total: -8.52 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.69 Total: -32.70 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.71 Total: -12.59 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.12 Total: -4.84 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.21 Total: -5.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.48 -8.05 -39.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.931 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds