Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46859 * 2 1 4 4 O 1.42893 * 109.47280 * 240.00172 * 2 1 3 5 5 C 1.42893 * 114.00352 * 90.00030 * 4 2 1 6 6 C 1.52996 * 109.47459 * 179.97438 * 5 4 2 7 7 F 1.39904 * 109.47090 * 60.00040 * 6 5 4 8 8 F 1.39902 * 109.47579 * 179.97438 * 6 5 4 9 9 F 1.39903 * 109.47407 * 300.00388 * 6 5 4 10 10 C 1.50703 * 109.46881 * 119.99663 * 2 1 3 11 11 O 1.21296 * 119.99667 * 115.00161 * 10 2 1 12 12 N 1.34774 * 120.00463 * 295.00202 * 10 2 1 13 13 C 1.40133 * 120.00025 * 185.52339 * 12 10 2 14 14 C 1.38641 * 120.10311 * 24.81460 * 13 12 10 15 15 C 1.38248 * 120.01146 * 180.02562 * 14 13 12 16 16 C 1.38301 * 120.20973 * 0.02562 * 15 14 13 17 17 C 1.38187 * 120.19847 * 359.97438 * 16 15 14 18 18 C 1.38790 * 119.99257 * 0.02562 * 17 16 15 19 19 S 1.76193 * 120.10614 * 179.97438 * 18 17 16 20 20 C 1.81397 * 103.00345 * 0.02562 * 19 18 17 21 21 C 1.50693 * 109.47592 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99935 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00190 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00070 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99865 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47282 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47128 * 119.99908 * 25 23 21 28 28 H 1.48501 * 109.47026 * 239.99773 * 25 23 21 29 29 H 1.08998 * 109.46890 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47177 * 300.00608 * 1 2 3 31 31 H 1.09002 * 109.46529 * 59.99750 * 1 2 3 32 32 H 1.08993 * 109.47366 * 300.00277 * 5 4 2 33 33 H 1.09000 * 109.47022 * 60.00009 * 5 4 2 34 34 H 0.97002 * 119.99281 * 5.52939 * 12 10 2 35 35 H 1.08000 * 119.99500 * 0.04626 * 14 13 12 36 36 H 1.08003 * 119.89424 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.89635 * 180.27391 * 16 15 14 38 38 H 1.08006 * 120.00536 * 180.02562 * 17 16 15 39 39 H 1.09004 * 109.46954 * 299.99811 * 20 19 18 40 40 H 1.09005 * 109.47245 * 59.99548 * 20 19 18 41 41 H 0.97001 * 119.99564 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7092 -0.6405 -3.4787 7 9 1.7703 -1.6271 -3.7986 8 9 2.8984 0.1979 -4.5826 9 9 3.9239 -1.2457 -3.1385 10 6 2.0323 -0.7104 1.2305 11 8 2.6531 -1.7468 1.1216 12 7 1.7919 -0.1942 2.4521 13 6 2.3561 -0.7901 3.5880 14 6 3.5178 -1.5384 3.4763 15 6 4.0725 -2.1259 4.5981 16 6 3.4718 -1.9704 5.8341 17 6 2.3136 -1.2264 5.9554 18 6 1.7497 -0.6329 4.8347 19 16 0.2727 0.3158 4.9858 20 6 -0.0979 0.2145 6.7586 21 6 -1.3562 0.9893 7.0540 22 1 -1.8803 1.4928 6.2551 23 6 -1.8377 1.0564 8.3442 24 7 -1.1992 0.4437 9.3171 25 14 -3.3971 2.0176 8.7103 26 1 -3.9201 2.6100 7.4531 27 1 -4.4161 1.1058 9.2898 28 1 -3.0945 3.1014 9.6793 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.2540 0.6547 -2.5588 33 1 2.9321 0.9513 -2.0449 34 1 1.2282 0.5898 2.5448 35 1 3.9898 -1.6621 2.5128 36 1 4.9778 -2.7081 4.5090 37 1 3.9118 -2.4279 6.7079 38 1 1.8473 -1.1067 6.9222 39 1 -0.2394 -0.8288 7.0412 40 1 0.7308 0.6358 7.3277 41 1 -1.5383 0.4906 10.2247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = -228.016576 kcal Electronic energy + Delta-G solvation = -29359.389997 eV Core-core repulsion = 24528.910675 eV Total energy + Delta-G solvation = -4830.479322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.11674 -48.66675 -48.60971 -41.81674 -39.91721 -38.76941 -36.01619 -35.32179 -33.28051 -32.16092 -30.75868 -30.55694 -29.99883 -25.95100 -25.34428 -24.32323 -24.06681 -23.24756 -21.43849 -19.78011 -19.62143 -19.51321 -19.09918 -18.48298 -18.08248 -17.85381 -17.40011 -16.81433 -16.71300 -16.13179 -16.03800 -15.88517 -15.51382 -15.39913 -15.19299 -15.04767 -14.85630 -14.78651 -14.76204 -14.73432 -14.67540 -14.26284 -14.18217 -13.99286 -13.62332 -13.37018 -13.09557 -12.88910 -12.78595 -12.69633 -12.53286 -12.34871 -11.91438 -11.62038 -11.57654 -11.23008 -10.99441 -10.87273 -10.70394 -10.51727 -9.34753 -8.35459 -8.19479 -6.49610 0.15786 0.31220 0.74881 1.22892 1.40984 1.41341 1.42429 1.55606 1.75170 1.83768 2.35666 2.43255 2.75826 2.82537 2.98987 3.00407 3.35696 3.46473 3.78110 3.86393 3.89870 4.06702 4.12457 4.13499 4.35418 4.45351 4.47932 4.60486 4.73008 4.84367 4.86801 4.91375 5.11385 5.18942 5.25563 5.40148 5.52575 5.55171 5.60319 5.82054 5.98263 6.27034 6.58054 6.91717 7.19481 8.76716 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.002110 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.352238 B =13264.828919 C =14966.892786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.142 0.858 4 O -0.374 6.374 5 C 0.012 3.988 6 C 0.458 3.542 7 F -0.188 7.188 8 F -0.173 7.173 9 F -0.190 7.190 10 C 0.510 3.490 11 O -0.539 6.539 12 N -0.652 5.652 13 C 0.150 3.850 14 C -0.126 4.126 15 C -0.107 4.107 16 C -0.116 4.116 17 C -0.131 4.131 18 C -0.121 4.121 19 S -0.146 6.146 20 C 0.080 3.920 21 C -0.538 4.538 22 H 0.070 0.930 23 C 0.016 3.984 24 N -0.923 5.923 25 Si 0.977 3.023 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.422 0.578 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.114 0.886 39 H 0.019 0.981 40 H 0.023 0.977 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.925 2.777 -22.479 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 H 0.159 0.841 4 O -0.292 6.292 5 C -0.065 4.065 6 C 0.404 3.596 7 F -0.170 7.170 8 F -0.155 7.155 9 F -0.172 7.172 10 C 0.298 3.702 11 O -0.415 6.415 12 N -0.298 5.298 13 C 0.049 3.951 14 C -0.148 4.148 15 C -0.128 4.128 16 C -0.136 4.136 17 C -0.156 4.156 18 C -0.236 4.236 19 S 0.099 5.901 20 C -0.068 4.068 21 C -0.577 4.577 22 H 0.089 0.911 23 C -0.185 4.185 24 N -0.561 5.561 25 Si 0.800 3.200 26 H -0.184 1.184 27 H -0.202 1.202 28 H -0.200 1.200 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.261 0.739 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.668 2.461 -23.301 24.653 hybrid contribution -0.172 -0.209 1.604 1.627 sum 7.495 2.252 -21.697 23.065 Atomic orbital electron populations 1.22347 0.91106 1.03964 1.05844 1.22057 0.96539 0.97295 0.81784 0.84101 1.88007 1.87333 1.34431 1.19474 1.23935 1.06507 0.92139 0.83933 1.20499 0.75440 0.78903 0.84780 1.93203 1.65266 1.64672 1.93816 1.93218 1.95213 1.71076 1.55963 1.93208 1.46909 1.84874 1.92198 1.21168 0.79258 0.85022 0.84738 1.90690 1.40444 1.23774 1.86546 1.43429 1.50332 1.31985 1.04061 1.17295 0.93905 0.99279 0.84614 1.21406 0.93967 0.98645 1.00753 1.21368 1.00735 0.99491 0.91192 1.21318 0.94829 0.98458 0.99015 1.21235 0.98014 0.99280 0.97058 1.21797 1.00500 1.05452 0.95859 1.84460 1.25261 1.62992 1.17370 1.21016 0.99607 0.99205 0.86944 1.20982 1.08837 1.33329 0.94567 0.91148 1.25908 1.00989 0.96258 0.95365 1.70063 1.41231 1.43488 1.01308 0.85213 0.77934 0.78134 0.78688 1.18361 1.20177 1.19975 0.92599 0.89303 0.87587 0.84759 0.85399 0.73906 0.83699 0.82575 0.83403 0.86825 0.96265 0.95889 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.47 71.98 0.68 -1.49 16 2 C 0.08 1.25 3.13 29.85 0.09 1.35 16 3 H 0.14 0.90 7.79 -2.39 -0.02 0.88 16 4 O -0.37 -6.82 9.41 -129.99 -1.22 -8.05 16 5 C 0.01 0.12 5.71 71.98 0.41 0.53 16 6 C 0.46 7.01 3.32 71.98 0.24 7.25 16 7 F -0.19 -3.64 17.26 44.97 0.78 -2.86 16 8 F -0.17 -2.36 17.32 44.97 0.78 -1.58 16 9 F -0.19 -3.92 17.26 44.97 0.78 -3.14 16 10 C 0.51 12.77 6.99 87.66 0.61 13.38 16 11 O -0.54 -17.89 13.68 15.91 0.22 -17.67 16 12 N -0.65 -16.98 5.14 -303.01 -1.56 -18.54 16 13 C 0.15 4.86 6.44 38.22 0.25 5.10 16 14 C -0.13 -3.85 8.72 22.37 0.19 -3.65 16 15 C -0.11 -2.88 10.04 22.29 0.22 -2.66 16 16 C -0.12 -3.41 10.04 22.27 0.22 -3.19 16 17 C -0.13 -4.81 9.36 22.39 0.21 -4.60 16 18 C -0.12 -4.46 6.12 22.71 0.14 -4.32 16 19 S -0.15 -5.83 20.55 -56.49 -1.16 -6.99 16 20 C 0.08 4.02 4.09 71.23 0.29 4.31 16 21 C -0.54 -28.83 9.13 25.60 0.23 -28.60 16 22 H 0.07 3.66 7.71 -2.91 -0.02 3.64 16 23 C 0.02 0.87 5.46 84.66 0.46 1.33 16 24 N -0.92 -52.27 13.29 21.45 0.28 -51.99 16 25 Si 0.98 41.44 29.54 68.60 2.03 43.47 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 27 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.02 7.76 -2.39 -0.02 1.00 16 31 H 0.11 0.66 7.87 -2.39 -0.02 0.64 16 32 H 0.13 0.36 7.87 -2.39 -0.02 0.34 16 33 H 0.13 0.50 8.08 -2.39 -0.02 0.48 16 34 H 0.42 9.38 7.25 -92.71 -0.67 8.71 16 35 H 0.15 4.42 5.79 -2.91 -0.02 4.41 16 36 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.11 4.61 5.88 -2.91 -0.02 4.59 16 39 H 0.02 1.04 7.75 -2.39 -0.02 1.02 16 40 H 0.02 1.22 7.75 -2.39 -0.02 1.21 16 41 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.41 376.83 5.60 -65.81 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.42 Total: 16.80 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.26 Total: -15.25 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -1.27 Total: -70.52 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.01 Total: -25.72 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 2.33 Total: -7.59 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.16 Total: -6.99 kcal Total: -71.41 5.60 -65.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.211 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds