Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00540 * 2 1 4 4 H 1.48501 * 109.46898 * 269.99864 * 3 2 1 5 5 H 1.48492 * 109.46808 * 29.99953 * 3 2 1 6 6 H 1.48498 * 109.47126 * 150.00134 * 3 2 1 7 7 C 1.37888 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99974 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99843 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.34839 * 119.87137 * 270.31899 * 10 9 7 12 12 O 1.21784 * 120.30397 * 359.97438 * 11 10 9 13 13 C 1.41570 * 119.38870 * 180.30098 * 11 10 9 14 14 C 1.35028 * 119.11275 * 359.40796 * 13 11 10 15 15 N 1.36831 * 119.68141 * 0.28010 * 14 13 11 16 16 C 1.46498 * 119.68793 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46840 * 90.00402 * 16 15 14 18 18 C 1.38265 * 119.99690 * 89.99890 * 17 16 15 19 19 C 1.38223 * 120.02179 * 179.97438 * 18 17 16 20 20 C 1.38229 * 120.00817 * 0.02735 * 19 18 17 21 21 C 1.38300 * 119.99501 * 359.97438 * 20 19 18 22 22 Br 1.89103 * 120.01584 * 180.02562 * 21 20 19 23 23 C 1.38202 * 119.99701 * 269.72145 * 17 16 15 24 24 C 1.34544 * 120.62412 * 0.02562 * 15 14 13 25 25 O 1.21586 * 119.53485 * 179.97438 * 24 15 14 26 26 H 0.97001 * 119.99260 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46838 * 60.00102 * 9 7 2 28 28 H 1.09000 * 109.47193 * 300.00305 * 9 7 2 29 29 H 1.08002 * 120.44815 * 179.69163 * 13 11 10 30 30 H 1.07994 * 120.15732 * 180.30105 * 14 13 11 31 31 H 1.09006 * 109.47605 * 210.00055 * 16 15 14 32 32 H 1.09002 * 109.47592 * 330.00591 * 16 15 14 33 33 H 1.07999 * 119.98755 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.99103 * 180.02562 * 19 18 17 35 35 H 1.08010 * 120.00293 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99914 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1943 0.0000 10 7 3.9997 -2.5755 0.0001 11 6 4.2178 -3.2106 1.1694 12 8 4.0113 -2.6411 2.2258 13 6 4.6957 -4.5431 1.1576 14 6 4.9113 -5.1533 -0.0275 15 7 4.6713 -4.4759 -1.1919 16 6 4.9046 -5.1379 -2.4778 17 6 3.6450 -5.8383 -2.9180 18 6 2.7167 -5.1686 -3.6937 19 6 1.5614 -5.8107 -4.0982 20 6 1.3333 -7.1225 -3.7268 21 6 2.2614 -7.7928 -2.9510 22 35 1.9503 -9.5876 -2.4432 23 6 3.4203 -7.1517 -2.5512 24 6 4.2231 -3.2076 -1.1671 25 8 4.0169 -2.6242 -2.2137 26 1 -0.4849 0.8401 -0.0004 27 1 3.8752 -0.6799 0.8895 28 1 3.8745 -0.6810 -0.8905 29 1 4.8810 -5.0663 2.0841 30 1 5.2711 -6.1711 -0.0562 31 1 5.1865 -4.3945 -3.2235 32 1 5.7074 -5.8675 -2.3706 33 1 2.8945 -4.1436 -3.9836 34 1 0.8369 -5.2872 -4.7044 35 1 0.4303 -7.6239 -4.0426 36 1 4.1474 -7.6759 -1.9487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095975413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = 3.531516 kcal Electronic energy + Delta-G solvation = -24209.262783 eV Core-core repulsion = 20512.950482 eV Total energy + Delta-G solvation = -3696.312301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.021 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82014 -39.61421 -38.28063 -36.86575 -34.75442 -33.30594 -32.46014 -32.08427 -30.69347 -29.41210 -28.52384 -26.56236 -24.52731 -23.00384 -22.62685 -21.93464 -21.34857 -18.74958 -17.59217 -17.32003 -16.88122 -16.52293 -16.03557 -15.62503 -15.26237 -15.07729 -14.62901 -14.16757 -13.76483 -13.69757 -13.50254 -13.33335 -13.18639 -13.15983 -12.48577 -12.30669 -12.07911 -11.76412 -11.35828 -11.32647 -11.06258 -11.03482 -10.60030 -10.52471 -10.33354 -10.17963 -9.66516 -9.49132 -9.19967 -8.88403 -8.63417 -8.59889 -8.32640 -6.10003 -4.09846 0.85727 0.98620 1.33019 1.38925 2.37988 2.55775 3.30037 3.35198 3.38614 3.43299 3.65936 4.02659 4.38987 4.39428 4.45336 4.49343 4.70117 4.91858 5.01508 5.10538 5.19714 5.24024 5.32823 5.45480 5.56009 5.66946 5.82003 5.91067 6.17960 6.27413 6.31762 6.39826 6.54160 6.59352 6.78598 6.93593 7.49527 7.85243 8.22544 8.36449 8.60371 8.88819 9.47069 11.03199 Molecular weight = 364.02amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.003040 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.573507 B = 9207.082541 C = 9834.676990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.212 3.788 10 N -0.531 5.531 11 C 0.540 3.460 12 O -0.511 6.511 13 C -0.288 4.288 14 C 0.158 3.842 15 N -0.538 5.538 16 C 0.156 3.844 17 C -0.113 4.113 18 C -0.067 4.067 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.096 4.096 22 Br -0.055 7.055 23 C -0.075 4.075 24 C 0.692 3.308 25 O -0.533 6.533 26 H 0.266 0.734 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.959 -21.557 -8.884 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.093 3.907 10 N -0.272 5.272 11 C 0.335 3.665 12 O -0.386 6.386 13 C -0.316 4.316 14 C 0.034 3.966 15 N -0.259 5.259 16 C 0.035 3.965 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.132 4.132 20 C -0.103 4.103 21 C -0.175 4.175 22 Br 0.030 6.970 23 C -0.096 4.096 24 C 0.395 3.605 25 O -0.406 6.406 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.433 -21.347 -8.793 24.939 hybrid contribution 0.144 1.064 0.012 1.074 sum 9.577 -20.283 -8.781 24.088 Atomic orbital electron populations 1.69882 1.06154 1.27112 1.49995 1.24754 0.94790 0.98844 0.94129 0.86857 0.80535 0.83678 0.78786 1.19777 1.20731 1.18799 1.21036 0.88115 0.95146 1.52221 0.90835 1.19999 0.96867 0.74823 0.98972 1.46559 1.57945 1.17740 1.04966 1.17256 0.78265 0.87245 0.83764 1.90849 1.50055 1.68221 1.29502 1.22002 1.14300 0.96656 0.98624 1.22127 0.92371 0.97318 0.84749 1.44938 1.61443 1.12291 1.07254 1.20639 0.94383 0.97169 0.84332 1.20058 0.97843 0.93775 0.99802 1.21503 0.92545 1.00348 0.94191 1.21271 0.97670 0.94021 1.00194 1.21191 0.98166 0.94843 0.96054 1.21691 0.98823 0.92174 1.04856 1.96712 1.96451 1.12387 1.91445 1.20935 0.95937 0.94128 0.98574 1.15939 0.78750 0.80519 0.85291 1.90944 1.54839 1.64372 1.30401 0.92409 0.92791 0.93448 0.81860 0.81471 0.86944 0.87909 0.84048 0.84666 0.84967 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.36 6.54 56.52 0.37 -6.00 16 7 C -0.53 -15.76 9.94 -34.43 -0.34 -16.10 16 8 H 0.07 2.42 8.06 -52.48 -0.42 2.00 16 9 C 0.21 5.49 3.92 -5.19 -0.02 5.47 16 10 N -0.53 -11.83 2.54 -125.32 -0.32 -12.15 16 11 C 0.54 11.28 7.44 -14.96 -0.11 11.17 16 12 O -0.51 -12.62 16.70 5.11 0.09 -12.53 16 13 C -0.29 -4.12 10.00 -39.45 -0.39 -4.52 16 14 C 0.16 1.72 10.38 -16.46 -0.17 1.54 16 15 N -0.54 -7.22 2.59 -122.83 -0.32 -7.54 16 16 C 0.16 1.51 5.46 -5.19 -0.03 1.48 16 17 C -0.11 -1.23 5.46 -104.62 -0.57 -1.80 16 18 C -0.07 -0.84 9.69 -39.58 -0.38 -1.22 16 19 C -0.11 -1.29 10.05 -39.59 -0.40 -1.68 16 20 C -0.08 -0.88 9.79 -39.56 -0.39 -1.27 16 21 C -0.10 -1.01 6.22 -39.52 -0.25 -1.26 16 22 Br -0.06 -0.52 33.70 -68.01 -2.29 -2.81 16 23 C -0.08 -0.73 9.44 -39.55 -0.37 -1.10 16 24 C 0.69 13.35 8.11 -87.29 -0.71 12.64 16 25 O -0.53 -11.41 14.79 5.29 0.08 -11.33 16 26 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.05 1.43 6.49 -51.93 -0.34 1.09 16 28 H 0.05 1.21 6.81 -51.93 -0.35 0.85 16 29 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.11 1.14 7.32 -51.93 -0.38 0.76 16 32 H 0.10 0.54 7.97 -51.93 -0.41 0.13 16 33 H 0.14 1.95 7.50 -52.49 -0.39 1.55 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -37.12 336.64 -9.40 -46.52 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.58 Total: -0.87 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -4.23 Total: 5.59 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.14 Total: -46.92 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.16 Total: -23.86 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.12 -9.40 -46.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.051 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds