Wall clock time and date at job start Tue Mar 31 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00540 * 2 1 4 4 H 1.48501 * 109.46898 * 269.99864 * 3 2 1 5 5 H 1.48492 * 109.46808 * 29.99953 * 3 2 1 6 6 H 1.48498 * 109.47126 * 150.00134 * 3 2 1 7 7 C 1.37888 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99974 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99843 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.34839 * 119.87137 * 270.31899 * 10 9 7 12 12 O 1.21784 * 120.30397 * 359.97438 * 11 10 9 13 13 C 1.41570 * 119.38870 * 180.30098 * 11 10 9 14 14 C 1.35028 * 119.11275 * 359.40796 * 13 11 10 15 15 N 1.36831 * 119.68141 * 0.28010 * 14 13 11 16 16 C 1.46498 * 119.68793 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46840 * 90.00402 * 16 15 14 18 18 C 1.38265 * 119.99690 * 89.99890 * 17 16 15 19 19 C 1.38223 * 120.02179 * 179.97438 * 18 17 16 20 20 C 1.38229 * 120.00817 * 0.02735 * 19 18 17 21 21 C 1.38300 * 119.99501 * 359.97438 * 20 19 18 22 22 Br 1.89103 * 120.01584 * 180.02562 * 21 20 19 23 23 C 1.38202 * 119.99701 * 269.72145 * 17 16 15 24 24 C 1.34544 * 120.62412 * 0.02562 * 15 14 13 25 25 O 1.21586 * 119.53485 * 179.97438 * 24 15 14 26 26 H 0.97001 * 119.99260 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46838 * 60.00102 * 9 7 2 28 28 H 1.09000 * 109.47193 * 300.00305 * 9 7 2 29 29 H 1.08002 * 120.44815 * 179.69163 * 13 11 10 30 30 H 1.07994 * 120.15732 * 180.30105 * 14 13 11 31 31 H 1.09006 * 109.47605 * 210.00055 * 16 15 14 32 32 H 1.09002 * 109.47592 * 330.00591 * 16 15 14 33 33 H 1.07999 * 119.98755 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.99103 * 180.02562 * 19 18 17 35 35 H 1.08010 * 120.00293 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99914 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1943 0.0000 10 7 3.9997 -2.5755 0.0001 11 6 4.2178 -3.2106 1.1694 12 8 4.0113 -2.6411 2.2258 13 6 4.6957 -4.5431 1.1576 14 6 4.9113 -5.1533 -0.0275 15 7 4.6713 -4.4759 -1.1919 16 6 4.9046 -5.1379 -2.4778 17 6 3.6450 -5.8383 -2.9180 18 6 2.7167 -5.1686 -3.6937 19 6 1.5614 -5.8107 -4.0982 20 6 1.3333 -7.1225 -3.7268 21 6 2.2614 -7.7928 -2.9510 22 35 1.9503 -9.5876 -2.4432 23 6 3.4203 -7.1517 -2.5512 24 6 4.2231 -3.2076 -1.1671 25 8 4.0169 -2.6242 -2.2137 26 1 -0.4849 0.8401 -0.0004 27 1 3.8752 -0.6799 0.8895 28 1 3.8745 -0.6810 -0.8905 29 1 4.8810 -5.0663 2.0841 30 1 5.2711 -6.1711 -0.0562 31 1 5.1865 -4.3945 -3.2235 32 1 5.7074 -5.8675 -2.3706 33 1 2.8945 -4.1436 -3.9836 34 1 0.8369 -5.2872 -4.7044 35 1 0.4303 -7.6239 -4.0426 36 1 4.1474 -7.6759 -1.9487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095975413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:27 Heat of formation + Delta-G solvation = -20.985993 kcal Electronic energy + Delta-G solvation = -24210.325942 eV Core-core repulsion = 20512.950482 eV Total energy + Delta-G solvation = -3697.375460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.021 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.21792 -40.59160 -39.71712 -38.19815 -36.44141 -34.96179 -33.93090 -33.06610 -31.76002 -30.49510 -30.21930 -27.56216 -26.11277 -24.38168 -23.80748 -23.39856 -22.34629 -20.11427 -19.40996 -18.78032 -18.03065 -17.93008 -17.41078 -16.80590 -16.45515 -16.28052 -16.04614 -15.86333 -15.20394 -14.75889 -14.61188 -14.57023 -14.49999 -14.36769 -14.12906 -13.69010 -13.43872 -13.13328 -12.97462 -12.57709 -12.31625 -12.12669 -12.07513 -11.92090 -11.86557 -11.67412 -11.27237 -11.17455 -10.90449 -10.53365 -10.02595 -9.71566 -9.49551 -8.42899 -6.50106 -0.02261 0.15134 0.23396 0.60035 1.03140 1.16194 1.28648 1.31912 1.41740 2.18527 2.24710 2.57776 2.65182 2.90761 3.56604 3.64944 3.72436 3.91574 4.06303 4.13559 4.22122 4.35585 4.44741 4.51821 4.57383 4.59933 4.67358 4.76350 4.86361 4.89451 5.10169 5.25519 5.29835 5.32137 5.41098 5.58573 5.74869 6.03328 6.36213 6.46155 6.72675 6.99958 7.14099 8.74287 Molecular weight = 364.02amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.003040 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.573507 B = 9207.082541 C = 9834.676990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.539 4.539 8 H 0.022 0.978 9 C 0.225 3.775 10 N -0.549 5.549 11 C 0.522 3.478 12 O -0.572 6.572 13 C -0.315 4.315 14 C 0.202 3.798 15 N -0.525 5.525 16 C 0.152 3.848 17 C -0.118 4.118 18 C -0.094 4.094 19 C -0.129 4.129 20 C -0.088 4.088 21 C -0.107 4.107 22 Br -0.042 7.042 23 C -0.065 4.065 24 C 0.682 3.318 25 O -0.565 6.565 26 H 0.272 0.728 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.195 0.805 30 H 0.249 0.751 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.785 -24.279 -9.126 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.770 3.230 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.577 4.577 8 H 0.041 0.959 9 C 0.103 3.897 10 N -0.290 5.290 11 C 0.321 3.679 12 O -0.452 6.452 13 C -0.342 4.342 14 C 0.079 3.921 15 N -0.244 5.244 16 C 0.032 3.968 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.148 4.148 20 C -0.108 4.108 21 C -0.186 4.186 22 Br 0.044 6.956 23 C -0.085 4.085 24 C 0.386 3.614 25 O -0.440 6.440 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.212 0.788 30 H 0.265 0.735 31 H 0.121 0.879 32 H 0.187 0.813 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 12.284 -24.143 -9.068 28.566 hybrid contribution -0.825 1.728 -0.032 1.915 sum 11.459 -22.415 -9.100 26.769 Atomic orbital electron populations 1.70025 1.08099 1.28673 1.50959 1.25795 0.95801 1.03279 0.93215 0.85709 0.79480 0.78022 0.79824 1.18094 1.19452 1.17421 1.21171 0.90390 0.93477 1.52690 0.95931 1.19506 0.94017 0.77837 0.98312 1.46639 1.58404 1.16992 1.06996 1.18446 0.77604 0.89412 0.82411 1.90800 1.53434 1.69905 1.31056 1.22055 1.16867 0.93508 1.01728 1.23200 0.87688 0.99134 0.82090 1.45148 1.59209 1.10114 1.09968 1.21131 0.95504 0.97931 0.82196 1.20165 0.97826 0.94436 0.99532 1.21525 0.94068 0.99688 0.96041 1.21386 0.97746 0.94803 1.00861 1.21379 0.98935 0.94444 0.96059 1.21941 0.99132 0.92943 1.04605 1.96734 1.96501 1.11162 1.91222 1.21316 0.96095 0.93311 0.97762 1.16218 0.78861 0.82507 0.83820 1.90920 1.56174 1.65828 1.31076 0.91858 0.93721 0.93230 0.78826 0.73491 0.87922 0.81260 0.86651 0.84520 0.83783 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.02 1.12 5.47 84.66 0.46 1.58 16 3 Si 0.95 46.39 27.47 68.60 1.88 48.28 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 7 C -0.54 -34.15 9.94 25.60 0.25 -33.90 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 9 C 0.22 12.11 3.92 85.64 0.34 12.44 16 10 N -0.55 -25.20 2.54 -786.92 -2.00 -27.21 16 11 C 0.52 22.17 7.44 85.05 0.63 22.81 16 12 O -0.57 -29.54 16.70 -4.62 -0.08 -29.61 16 13 C -0.32 -8.12 10.00 22.35 0.22 -7.90 16 14 C 0.20 3.26 10.38 83.17 0.86 4.13 16 15 N -0.53 -12.34 2.59 -660.90 -1.71 -14.06 16 16 C 0.15 2.28 5.46 85.63 0.47 2.75 16 17 C -0.12 -2.23 5.46 -19.87 -0.11 -2.34 16 18 C -0.09 -2.39 9.69 22.27 0.22 -2.18 16 19 C -0.13 -3.02 10.05 22.26 0.22 -2.80 16 20 C -0.09 -1.79 9.79 22.28 0.22 -1.57 16 21 C -0.11 -1.93 6.22 22.31 0.14 -1.79 16 22 Br -0.04 -0.65 33.70 -20.37 -0.69 -1.34 16 23 C -0.06 -0.96 9.44 22.29 0.21 -0.75 16 24 C 0.68 26.32 8.11 179.18 1.45 27.77 16 25 O -0.56 -24.92 14.79 -3.99 -0.06 -24.98 16 26 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 27 H 0.04 2.46 6.49 -2.38 -0.02 2.45 16 28 H 0.05 2.61 6.81 -2.39 -0.02 2.60 16 29 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 30 H 0.25 0.14 8.06 -2.91 -0.02 0.12 16 31 H 0.10 1.85 7.32 -2.38 -0.02 1.83 16 32 H 0.17 0.41 7.97 -2.39 -0.02 0.39 16 33 H 0.12 3.46 7.50 -2.91 -0.02 3.44 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -91.86 336.64 4.30 -87.56 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.06 Total: 4.09 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.59 Total: 18.26 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.42 Total: -102.25 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.14 Total: -54.59 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.28 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.69 Total: -1.34 kcal Total: -91.86 4.30 -87.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.574 kcal (2) G-P(sol) polarization free energy of solvation -91.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds