Wall clock time and date at job start Tue Mar 31 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47179 * 110.99959 * 2 1 4 4 C 1.52981 * 108.72927 * 167.50792 * 3 2 1 5 5 N 1.46005 * 110.01525 * 50.22155 * 4 3 2 6 6 C 1.37101 * 118.51740 * 161.93405 * 5 4 3 7 7 H 1.07995 * 120.00077 * 203.18735 * 6 5 4 8 8 C 1.38952 * 119.99578 * 23.18895 * 6 5 4 9 9 N 1.31413 * 120.00250 * 18.96957 * 8 6 5 10 10 Si 1.86803 * 119.99794 * 198.96709 * 8 6 5 11 11 H 1.48504 * 109.46925 * 60.00628 * 10 8 6 12 12 H 1.48499 * 109.46762 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47290 * 300.00125 * 10 8 6 14 14 C 1.33697 * 122.96815 * 341.96154 * 5 4 3 15 15 O 1.21290 * 118.60881 * 181.67607 * 14 5 4 16 16 C 1.46987 * 111.00283 * 237.13030 * 2 1 3 17 17 C 1.53115 * 109.25020 * 53.68051 * 16 2 1 18 18 C 1.53172 * 109.31992 * 179.00096 * 17 16 2 19 19 N 1.46929 * 108.78262 * 54.73136 * 18 17 16 20 20 C 1.34776 * 120.65032 * 126.41720 * 19 18 17 21 21 O 1.21699 * 119.99849 * 4.28798 * 20 19 18 22 22 C 1.46587 * 120.00226 * 184.29207 * 20 19 18 23 23 C 1.36644 * 125.46170 * 139.00414 * 22 20 19 24 24 C 1.37464 * 113.29967 * 180.02562 * 23 22 20 25 25 C 1.33815 * 115.10219 * 359.97438 * 24 23 22 26 26 S 1.70621 * 110.95352 * 359.73321 * 25 24 23 27 27 C 1.46922 * 118.70513 * 306.39666 * 19 18 17 28 28 C 1.53114 * 109.24888 * 294.02392 * 16 2 1 29 29 H 1.09001 * 109.46727 * 182.87121 * 1 2 3 30 30 H 1.09005 * 109.46568 * 62.86788 * 1 2 3 31 31 H 1.08999 * 109.47250 * 302.87296 * 1 2 3 32 32 H 1.08997 * 109.59975 * 287.26516 * 3 2 1 33 33 H 1.09006 * 109.60008 * 47.73239 * 3 2 1 34 34 H 1.09001 * 109.38150 * 290.05305 * 4 3 2 35 35 H 1.09002 * 109.37874 * 170.38964 * 4 3 2 36 36 H 0.97000 * 119.99819 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.49374 * 298.95878 * 17 16 2 38 38 H 1.08997 * 109.49558 * 59.04455 * 17 16 2 39 39 H 1.08998 * 109.59095 * 294.93884 * 18 17 16 40 40 H 1.09007 * 109.58252 * 174.51644 * 18 17 16 41 41 H 1.08002 * 123.34970 * 0.02562 * 23 22 20 42 42 H 1.07999 * 122.45449 * 180.02562 * 24 23 22 43 43 H 1.08006 * 124.52908 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58289 * 293.80245 * 27 19 18 45 45 H 1.09002 * 109.70218 * 173.45230 * 27 19 18 46 46 H 1.08998 * 109.49312 * 300.94165 * 28 16 2 47 47 H 1.09003 * 109.49288 * 61.00378 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3740 0.0000 4 6 3.4930 1.3257 0.3134 5 7 4.1538 0.3536 -0.5526 6 6 5.5153 0.4246 -0.6970 7 1 5.9882 0.0038 -1.5720 8 6 6.2867 1.0380 0.2825 9 7 5.7978 1.2140 1.4895 10 14 8.0189 1.6125 -0.1165 11 1 7.9683 2.6134 -1.2124 12 1 8.6256 2.2304 1.0898 13 1 8.8394 0.4511 -0.5443 14 6 3.4911 -0.6025 -1.2116 15 8 4.1232 -1.3881 -1.8858 16 6 1.9958 -0.7447 -1.1525 17 6 1.3775 -0.1888 -2.4382 18 6 1.9443 -0.9472 -3.6423 19 7 1.7234 -2.3859 -3.4419 20 6 1.0992 -3.1228 -4.3820 21 8 0.7820 -2.6151 -5.4416 22 6 0.8023 -4.5357 -4.1283 23 6 -0.3559 -5.1759 -4.4687 24 6 -0.3687 -6.5032 -4.1114 25 6 0.7397 -6.9372 -3.5000 26 16 1.8827 -5.6800 -3.3441 27 6 2.1967 -3.0058 -2.1967 28 6 1.6273 -2.2239 -1.0089 29 1 -0.3633 -1.0264 0.0515 30 1 -0.3632 0.4687 -0.9146 31 1 -0.3634 0.5578 0.8631 32 1 1.8429 1.8246 -0.9805 33 1 1.4827 1.9629 0.7599 34 1 3.6354 1.0378 1.3550 35 1 3.9289 2.3113 0.1495 36 1 6.3365 1.6419 2.1733 37 1 0.2953 -0.3148 -2.4054 38 1 1.6182 0.8703 -2.5292 39 1 3.0128 -0.7501 -3.7283 40 1 1.4364 -0.6226 -4.5506 41 1 -1.1793 -4.6876 -4.9688 42 1 -1.2113 -7.1488 -4.3103 43 1 0.8922 -7.9492 -3.1549 44 1 3.2858 -2.9765 -2.1650 45 1 1.8575 -4.0406 -2.1493 46 1 2.0463 -2.6148 -0.0817 47 1 0.5425 -2.3284 -0.9905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:26 Heat of formation + Delta-G solvation = 17.977925 kcal Electronic energy + Delta-G solvation = -32435.161976 eV Core-core repulsion = 28325.332361 eV Total energy + Delta-G solvation = -4109.829614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88385 -39.37313 -37.56464 -36.78062 -36.29421 -34.48545 -31.90389 -31.51617 -30.89474 -29.56128 -28.84195 -26.66492 -25.11515 -24.78774 -23.66411 -23.15911 -21.75702 -21.35421 -20.40294 -19.09321 -18.29007 -17.50484 -16.86671 -16.47714 -16.00776 -15.94131 -15.18446 -15.05712 -15.03548 -14.77993 -14.65804 -14.25012 -13.85150 -13.55393 -13.42391 -13.20353 -13.13590 -12.88584 -12.70380 -12.56287 -12.32656 -12.20448 -12.04808 -11.83862 -11.64761 -11.44535 -11.16825 -11.02561 -10.99184 -10.76733 -10.67220 -10.61112 -10.46780 -10.30268 -10.17910 -9.84756 -9.06107 -8.96289 -8.66735 -8.44323 -8.02047 -7.86124 -7.67206 -6.34184 -3.94205 0.54926 1.36835 1.84362 2.40581 3.04853 3.14804 3.22382 3.25986 3.30182 3.74471 4.05042 4.18647 4.59908 4.71609 4.88495 4.90829 4.96091 5.14069 5.21741 5.29760 5.35296 5.36537 5.42022 5.45616 5.60727 5.66626 5.71300 5.76646 5.79489 5.84565 5.90140 5.99583 6.04199 6.09185 6.11013 6.19319 6.23289 6.31603 6.37144 6.61555 6.67260 6.79736 7.23388 7.26318 7.33825 7.55788 7.61202 8.13366 8.26234 8.41816 9.14118 9.41738 9.92547 10.64949 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.003267 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.466912 B = 8569.808478 C = 9359.406712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.027 3.973 4 C 0.135 3.865 5 N -0.423 5.423 6 C -0.316 4.316 7 H 0.101 0.899 8 C 0.036 3.964 9 N -0.872 5.872 10 Si 0.922 3.078 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.459 3.541 15 O -0.585 6.585 16 C 0.107 3.893 17 C -0.152 4.152 18 C 0.121 3.879 19 N -0.585 5.585 20 C 0.584 3.416 21 O -0.543 6.543 22 C -0.255 4.255 23 C -0.074 4.074 24 C -0.148 4.148 25 C -0.258 4.258 26 S 0.237 5.763 27 C 0.078 3.922 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.165 0.835 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 -7.938 -3.078 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.101 4.101 4 C 0.011 3.989 5 N -0.139 5.139 6 C -0.443 4.443 7 H 0.119 0.881 8 C -0.169 4.169 9 N -0.510 5.510 10 Si 0.749 3.251 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.247 3.753 15 O -0.471 6.471 16 C 0.014 3.986 17 C -0.193 4.193 18 C -0.002 4.002 19 N -0.316 5.316 20 C 0.371 3.629 21 O -0.423 6.423 22 C -0.376 4.376 23 C -0.107 4.107 24 C -0.179 4.179 25 C -0.395 4.395 26 S 0.505 5.495 27 C -0.045 4.045 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.183 0.817 44 H 0.149 0.851 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.396 -8.084 -2.655 13.434 hybrid contribution -1.151 0.624 -1.065 1.688 sum -11.547 -7.460 -3.720 14.242 Atomic orbital electron populations 1.22490 0.88221 1.02053 1.00334 1.62716 1.07207 1.14178 1.40457 1.22800 0.98007 0.89067 1.00230 1.21425 0.86762 0.93063 0.97617 1.43153 1.07002 1.24608 1.39093 1.19624 0.81085 1.37669 1.05957 0.88119 1.25316 0.99887 0.97638 0.94029 1.69982 1.38459 1.41279 1.01330 0.86060 0.82030 0.79263 0.77753 1.19968 1.20985 1.19731 1.19070 0.87373 0.82964 0.85933 1.90336 1.67451 1.43208 1.46092 1.21144 0.94233 0.94770 0.88462 1.22483 1.00615 1.00471 0.95691 1.21582 1.02709 0.78333 0.97583 1.47848 1.55830 1.09503 1.18391 1.17031 0.77898 0.84137 0.83812 1.90791 1.54430 1.72345 1.24713 1.24664 1.01354 0.98799 1.12738 1.20637 0.97283 0.93639 0.99099 1.19947 0.99619 0.95603 1.02733 1.25555 1.00534 1.05596 1.07855 1.83591 1.17449 0.96460 1.51991 1.22838 1.04682 0.95015 0.81969 1.21656 1.00131 0.92913 0.98965 0.91400 0.95420 0.91473 0.94719 0.89944 0.88565 0.91726 0.92116 0.91011 0.90515 0.89262 0.89635 0.83525 0.84204 0.81722 0.85107 0.90924 0.89679 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.74 60.06 0.52 0.75 16 2 N -0.52 -8.62 4.68 -228.29 -1.07 -9.69 16 3 C 0.03 0.45 5.49 -3.68 -0.02 0.43 16 4 C 0.14 2.88 4.98 -4.32 -0.02 2.86 16 5 N -0.42 -10.21 2.98 -115.63 -0.34 -10.56 16 6 C -0.32 -8.36 9.07 -14.93 -0.14 -8.50 16 7 H 0.10 2.80 7.31 -52.49 -0.38 2.42 16 8 C 0.04 0.90 4.99 -17.47 -0.09 0.82 16 9 N -0.87 -22.37 10.84 55.50 0.60 -21.77 16 10 Si 0.92 20.04 29.59 -169.99 -5.03 15.01 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.46 10.31 5.93 -11.65 -0.07 10.24 16 15 O -0.58 -14.26 10.94 5.55 0.06 -14.20 16 16 C 0.11 1.90 0.44 -132.77 -0.06 1.84 16 17 C -0.15 -2.45 4.10 -26.58 -0.11 -2.56 16 18 C 0.12 2.09 5.90 -3.72 -0.02 2.07 16 19 N -0.58 -9.88 2.97 -174.36 -0.52 -10.40 16 20 C 0.58 9.98 7.55 -12.89 -0.10 9.88 16 21 O -0.54 -10.70 16.49 5.19 0.09 -10.62 16 22 C -0.26 -3.61 5.64 -36.79 -0.21 -3.82 16 23 C -0.07 -0.90 10.21 -40.44 -0.41 -1.31 16 24 C -0.15 -1.47 10.15 -41.42 -0.42 -1.89 16 25 C -0.26 -2.49 10.92 29.18 0.32 -2.18 16 26 S 0.24 2.77 19.59 -107.50 -2.11 0.67 16 27 C 0.08 1.27 5.34 -3.72 -0.02 1.25 16 28 C -0.10 -1.57 4.77 -26.58 -0.13 -1.70 16 29 H 0.07 0.82 6.47 -51.93 -0.34 0.49 16 30 H 0.03 0.34 6.22 -51.93 -0.32 0.02 16 31 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.03 0.56 6.19 -51.93 -0.32 0.24 16 33 H 0.08 1.18 8.00 -51.93 -0.42 0.77 16 34 H 0.10 2.27 6.77 -51.93 -0.35 1.92 16 35 H 0.06 1.41 7.79 -51.93 -0.40 1.01 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.22 16 37 H 0.07 1.05 6.37 -51.93 -0.33 0.72 16 38 H 0.08 1.23 6.40 -51.93 -0.33 0.90 16 39 H 0.09 1.77 6.47 -51.93 -0.34 1.43 16 40 H 0.09 1.45 7.03 -51.92 -0.37 1.09 16 41 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.13 2.53 5.21 -51.93 -0.27 2.26 16 45 H 0.07 1.03 3.71 -25.87 -0.10 0.93 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -30.09 362.82 -9.67 -39.76 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.85 Total: 8.14 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.96 Total: 8.19 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -1.33 Total: -52.42 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.15 Total: -24.82 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.11 Total: 0.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.09 -9.67 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.737 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds