Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47179 * 110.99959 * 2 1 4 4 C 1.52981 * 108.72927 * 167.50792 * 3 2 1 5 5 N 1.46005 * 110.01525 * 50.22155 * 4 3 2 6 6 C 1.37101 * 118.51740 * 161.93405 * 5 4 3 7 7 H 1.07995 * 120.00077 * 203.18735 * 6 5 4 8 8 C 1.38952 * 119.99578 * 23.18895 * 6 5 4 9 9 N 1.31413 * 120.00250 * 18.96957 * 8 6 5 10 10 Si 1.86803 * 119.99794 * 198.96709 * 8 6 5 11 11 H 1.48504 * 109.46925 * 60.00628 * 10 8 6 12 12 H 1.48499 * 109.46762 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47290 * 300.00125 * 10 8 6 14 14 C 1.33697 * 122.96815 * 341.96154 * 5 4 3 15 15 O 1.21290 * 118.60881 * 181.67607 * 14 5 4 16 16 C 1.46987 * 111.00283 * 237.13030 * 2 1 3 17 17 C 1.53115 * 109.25020 * 53.68051 * 16 2 1 18 18 C 1.53172 * 109.31992 * 179.00096 * 17 16 2 19 19 N 1.46929 * 108.78262 * 54.73136 * 18 17 16 20 20 C 1.34776 * 120.65032 * 126.41720 * 19 18 17 21 21 O 1.21699 * 119.99849 * 4.28798 * 20 19 18 22 22 C 1.46587 * 120.00226 * 184.29207 * 20 19 18 23 23 C 1.36644 * 125.46170 * 139.00414 * 22 20 19 24 24 C 1.37464 * 113.29967 * 180.02562 * 23 22 20 25 25 C 1.33815 * 115.10219 * 359.97438 * 24 23 22 26 26 S 1.70621 * 110.95352 * 359.73321 * 25 24 23 27 27 C 1.46922 * 118.70513 * 306.39666 * 19 18 17 28 28 C 1.53114 * 109.24888 * 294.02392 * 16 2 1 29 29 H 1.09001 * 109.46727 * 182.87121 * 1 2 3 30 30 H 1.09005 * 109.46568 * 62.86788 * 1 2 3 31 31 H 1.08999 * 109.47250 * 302.87296 * 1 2 3 32 32 H 1.08997 * 109.59975 * 287.26516 * 3 2 1 33 33 H 1.09006 * 109.60008 * 47.73239 * 3 2 1 34 34 H 1.09001 * 109.38150 * 290.05305 * 4 3 2 35 35 H 1.09002 * 109.37874 * 170.38964 * 4 3 2 36 36 H 0.97000 * 119.99819 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.49374 * 298.95878 * 17 16 2 38 38 H 1.08997 * 109.49558 * 59.04455 * 17 16 2 39 39 H 1.08998 * 109.59095 * 294.93884 * 18 17 16 40 40 H 1.09007 * 109.58252 * 174.51644 * 18 17 16 41 41 H 1.08002 * 123.34970 * 0.02562 * 23 22 20 42 42 H 1.07999 * 122.45449 * 180.02562 * 24 23 22 43 43 H 1.08006 * 124.52908 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58289 * 293.80245 * 27 19 18 45 45 H 1.09002 * 109.70218 * 173.45230 * 27 19 18 46 46 H 1.08998 * 109.49312 * 300.94165 * 28 16 2 47 47 H 1.09003 * 109.49288 * 61.00378 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3740 0.0000 4 6 3.4930 1.3257 0.3134 5 7 4.1538 0.3536 -0.5526 6 6 5.5153 0.4246 -0.6970 7 1 5.9882 0.0038 -1.5720 8 6 6.2867 1.0380 0.2825 9 7 5.7978 1.2140 1.4895 10 14 8.0189 1.6125 -0.1165 11 1 7.9683 2.6134 -1.2124 12 1 8.6256 2.2304 1.0898 13 1 8.8394 0.4511 -0.5443 14 6 3.4911 -0.6025 -1.2116 15 8 4.1232 -1.3881 -1.8858 16 6 1.9958 -0.7447 -1.1525 17 6 1.3775 -0.1888 -2.4382 18 6 1.9443 -0.9472 -3.6423 19 7 1.7234 -2.3859 -3.4419 20 6 1.0992 -3.1228 -4.3820 21 8 0.7820 -2.6151 -5.4416 22 6 0.8023 -4.5357 -4.1283 23 6 -0.3559 -5.1759 -4.4687 24 6 -0.3687 -6.5032 -4.1114 25 6 0.7397 -6.9372 -3.5000 26 16 1.8827 -5.6800 -3.3441 27 6 2.1967 -3.0058 -2.1967 28 6 1.6273 -2.2239 -1.0089 29 1 -0.3633 -1.0264 0.0515 30 1 -0.3632 0.4687 -0.9146 31 1 -0.3634 0.5578 0.8631 32 1 1.8429 1.8246 -0.9805 33 1 1.4827 1.9629 0.7599 34 1 3.6354 1.0378 1.3550 35 1 3.9289 2.3113 0.1495 36 1 6.3365 1.6419 2.1733 37 1 0.2953 -0.3148 -2.4054 38 1 1.6182 0.8703 -2.5292 39 1 3.0128 -0.7501 -3.7283 40 1 1.4364 -0.6226 -4.5506 41 1 -1.1793 -4.6876 -4.9688 42 1 -1.2113 -7.1488 -4.3103 43 1 0.8922 -7.9492 -3.1549 44 1 3.2858 -2.9765 -2.1650 45 1 1.8575 -4.0406 -2.1493 46 1 2.0463 -2.6148 -0.0817 47 1 0.5425 -2.3284 -0.9905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096050094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -2.077495 kcal Electronic energy + Delta-G solvation = -32436.031644 eV Core-core repulsion = 28325.332361 eV Total energy + Delta-G solvation = -4110.699282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.35169 -40.73495 -38.65148 -38.24812 -37.79017 -36.13720 -33.68590 -32.87508 -32.33173 -30.62788 -30.28339 -28.08761 -26.52168 -26.12272 -25.08851 -24.37473 -23.19474 -22.79955 -21.63694 -20.05233 -19.75859 -18.98554 -18.56516 -17.92612 -17.38628 -17.01653 -16.75893 -16.62580 -16.34319 -16.17007 -15.99995 -15.70382 -15.34380 -14.91912 -14.76404 -14.62092 -14.33449 -14.04127 -13.84060 -13.73970 -13.66558 -13.49185 -13.31849 -13.14798 -12.99638 -12.98486 -12.86939 -12.53938 -12.47876 -12.20747 -12.05358 -11.99506 -11.95453 -11.89420 -11.57562 -11.18088 -10.96953 -10.22939 -9.87997 -9.59584 -9.48619 -9.32579 -9.27400 -8.26875 -5.95967 -0.38829 0.41240 0.97934 1.38026 1.41591 1.47858 1.51122 1.83525 2.02786 2.07414 2.28312 2.80082 3.06359 3.09502 3.42006 3.56543 3.73250 3.87330 4.00414 4.08997 4.16649 4.21103 4.30859 4.32411 4.40874 4.42763 4.53209 4.54887 4.58134 4.61787 4.68682 4.77653 4.81188 4.88691 4.97757 5.01250 5.05565 5.09833 5.22806 5.24794 5.41195 5.43986 5.49921 5.56583 5.91864 6.07105 6.17595 6.31092 6.51987 6.94894 7.20958 7.57947 8.09722 8.69497 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.003267 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.466912 B = 8569.808478 C = 9359.406712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.037 3.963 4 C 0.142 3.858 5 N -0.443 5.443 6 C -0.348 4.348 7 H 0.073 0.927 8 C 0.004 3.996 9 N -0.888 5.888 10 Si 0.981 3.019 11 H -0.270 1.270 12 H -0.272 1.272 13 H -0.278 1.278 14 C 0.452 3.548 15 O -0.612 6.612 16 C 0.114 3.886 17 C -0.141 4.141 18 C 0.123 3.877 19 N -0.586 5.586 20 C 0.584 3.416 21 O -0.579 6.579 22 C -0.297 4.297 23 C -0.060 4.060 24 C -0.151 4.151 25 C -0.232 4.232 26 S 0.219 5.781 27 C 0.085 3.915 28 C -0.094 4.094 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.272 0.728 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.198 0.802 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 -9.313 -2.489 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.259 5.259 3 C -0.091 4.091 4 C 0.018 3.982 5 N -0.160 5.160 6 C -0.476 4.476 7 H 0.091 0.909 8 C -0.199 4.199 9 N -0.526 5.526 10 Si 0.805 3.195 11 H -0.195 1.195 12 H -0.196 1.196 13 H -0.203 1.203 14 C 0.241 3.759 15 O -0.500 6.500 16 C 0.021 3.979 17 C -0.181 4.181 18 C -0.001 4.001 19 N -0.316 5.316 20 C 0.373 3.627 21 O -0.461 6.461 22 C -0.416 4.416 23 C -0.094 4.094 24 C -0.181 4.181 25 C -0.370 4.370 26 S 0.487 5.513 27 C -0.038 4.038 28 C -0.133 4.133 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.170 0.830 42 H 0.191 0.809 43 H 0.216 0.784 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.196 -9.461 -2.041 16.365 hybrid contribution -0.301 0.891 -1.289 1.596 sum -13.497 -8.569 -3.330 16.331 Atomic orbital electron populations 1.22608 0.85151 1.03386 1.01848 1.62679 1.09844 1.13699 1.39645 1.22697 0.94848 0.89932 1.01596 1.21295 0.89812 0.91399 0.95651 1.43414 1.06545 1.25922 1.40133 1.19540 0.82935 1.39384 1.05764 0.90946 1.25979 1.03076 0.97152 0.93699 1.70072 1.39582 1.41278 1.01676 0.85187 0.77817 0.78537 0.77948 1.19512 1.19612 1.20302 1.20059 0.89753 0.81821 0.84294 1.90349 1.69038 1.43897 1.46667 1.21006 0.90619 0.96317 0.89960 1.22403 1.01759 0.99987 0.93925 1.21422 1.00631 0.79441 0.98564 1.47876 1.55869 1.09203 1.18678 1.17441 0.76979 0.85298 0.82978 1.90753 1.55982 1.73508 1.25872 1.24445 1.03222 0.97711 1.16253 1.20947 0.96495 0.94554 0.97420 1.20236 1.00736 0.94857 1.02277 1.25934 0.98986 1.06075 1.05965 1.83653 1.18069 0.97330 1.52248 1.22673 1.02529 0.96686 0.81954 1.21668 1.01775 0.91526 0.98295 0.90255 0.94292 0.89439 0.94016 0.86799 0.91182 0.93318 0.91777 0.88360 0.90570 0.92811 0.89445 0.82957 0.80920 0.78443 0.88713 0.88419 0.90430 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.74 127.69 1.12 1.49 16 2 N -0.53 -16.70 4.68 -876.18 -4.10 -20.80 16 3 C 0.04 1.20 5.49 86.24 0.47 1.68 16 4 C 0.14 6.21 4.98 86.47 0.43 6.64 16 5 N -0.44 -22.43 2.98 -638.74 -1.90 -24.33 16 6 C -0.35 -19.51 9.07 84.04 0.76 -18.75 16 7 H 0.07 4.35 7.31 -2.91 -0.02 4.33 16 8 C 0.00 0.19 4.99 84.93 0.42 0.62 16 9 N -0.89 -46.76 10.84 21.66 0.23 -46.53 16 10 Si 0.98 42.26 29.59 68.60 2.03 44.29 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 14 C 0.45 21.16 5.93 87.71 0.52 21.68 16 15 O -0.61 -31.86 10.94 -3.06 -0.03 -31.89 16 16 C 0.11 4.00 0.44 2.72 0.00 4.00 16 17 C -0.14 -4.42 4.10 30.69 0.13 -4.29 16 18 C 0.12 4.40 5.90 86.36 0.51 4.91 16 19 N -0.59 -20.13 2.97 -823.77 -2.45 -22.58 16 20 C 0.58 20.06 7.55 86.42 0.65 20.71 16 21 O -0.58 -23.20 16.49 -4.34 -0.07 -23.27 16 22 C -0.30 -8.08 5.64 24.08 0.14 -7.95 16 23 C -0.06 -1.32 10.21 21.71 0.22 -1.10 16 24 C -0.15 -2.41 10.15 21.08 0.21 -2.19 16 25 C -0.23 -3.61 10.92 66.81 0.73 -2.88 16 26 S 0.22 4.83 19.59 -56.49 -1.11 3.72 16 27 C 0.08 2.79 5.34 86.36 0.46 3.25 16 28 C -0.09 -2.93 4.77 30.69 0.15 -2.78 16 29 H 0.08 1.58 6.47 -2.39 -0.02 1.56 16 30 H 0.04 0.78 6.22 -2.38 -0.01 0.77 16 31 H 0.09 1.61 8.06 -2.39 -0.02 1.59 16 32 H 0.04 1.30 6.19 -2.39 -0.01 1.28 16 33 H 0.11 2.96 8.00 -2.38 -0.02 2.94 16 34 H 0.07 3.40 6.77 -2.39 -0.02 3.39 16 35 H 0.05 2.21 7.79 -2.39 -0.02 2.19 16 36 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 37 H 0.10 2.60 6.37 -2.39 -0.02 2.59 16 38 H 0.08 2.40 6.40 -2.39 -0.02 2.38 16 39 H 0.05 2.30 6.47 -2.39 -0.02 2.28 16 40 H 0.09 3.06 7.03 -2.38 -0.02 3.05 16 41 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.10 3.88 5.21 -2.41 -0.01 3.87 16 45 H 0.10 2.72 3.71 -18.95 -0.07 2.65 16 46 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.09 2.37 6.58 -2.39 -0.02 2.35 16 Total: -1.00 -70.32 362.82 0.48 -69.84 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.96 Total: 26.49 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.92 Total: 25.04 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -8.22 Total: -114.23 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.11 Total: -55.16 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.11 Total: 3.72 kcal Total: -70.32 0.48 -69.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.761 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds