Wall clock time and date at job start Tue Mar 31 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38376 * 119.92177 * 2 1 4 4 C 1.38378 * 120.31088 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.92258 * 179.97438 * 4 3 2 6 6 C 1.37928 * 120.15133 * 359.97438 * 4 3 2 7 7 C 1.39666 * 119.84528 * 359.97438 * 6 4 3 8 8 C 1.47664 * 120.15135 * 180.02562 * 7 6 4 9 9 N 1.30430 * 124.20111 * 180.02562 * 8 7 6 10 10 C 1.36427 * 109.09748 * 180.02562 * 9 8 7 11 11 C 1.37745 * 127.29026 * 179.97438 * 10 9 8 12 12 C 1.46678 * 120.00264 * 354.87891 * 11 10 9 13 13 C 1.40161 * 120.15802 * 5.80154 * 12 11 10 14 14 C 1.37864 * 119.94016 * 180.02562 * 13 12 11 15 15 C 1.38337 * 120.27004 * 0.02653 * 14 13 12 16 16 C 1.39061 * 120.32762 * 359.97360 * 15 14 13 17 17 O 1.35758 * 119.97402 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00266 * 174.31058 * 17 16 15 19 19 H 1.08000 * 119.99839 * 5.04736 * 18 17 16 20 20 C 1.38656 * 120.00193 * 185.04484 * 18 17 16 21 21 N 1.31558 * 119.99725 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47268 * 59.99878 * 22 20 18 24 24 H 1.48496 * 109.47218 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47343 * 300.00007 * 22 20 18 26 26 C 1.38504 * 120.05094 * 0.27357 * 16 15 14 27 27 C 1.47587 * 105.41895 * 0.23716 * 10 9 8 28 28 O 1.21646 * 127.40061 * 179.76264 * 27 10 9 29 29 O 1.34688 * 124.20681 * 0.02562 * 8 7 6 30 30 C 1.37930 * 119.92492 * 180.27623 * 2 1 3 31 31 H 1.09004 * 109.47015 * 90.00143 * 1 2 3 32 32 H 1.09001 * 109.47215 * 210.00049 * 1 2 3 33 33 H 1.09002 * 109.46972 * 330.00372 * 1 2 3 34 34 H 1.08010 * 119.84559 * 0.02562 * 3 2 1 35 35 H 1.09004 * 109.47173 * 270.02160 * 5 4 3 36 36 H 1.08994 * 109.47201 * 30.02699 * 5 4 3 37 37 H 1.09001 * 109.46977 * 150.02510 * 5 4 3 38 38 H 1.08000 * 120.08057 * 180.02562 * 6 4 3 39 39 H 1.08004 * 119.99706 * 174.88274 * 11 10 9 40 40 H 1.08001 * 120.03345 * 0.04304 * 13 12 11 41 41 H 1.07995 * 119.86700 * 179.97438 * 14 13 12 42 42 H 1.08000 * 119.84025 * 179.97438 * 15 14 13 43 43 H 0.97000 * 119.99268 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12785 * 179.70535 * 26 16 15 45 45 H 1.08004 * 120.07708 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5810 1.2087 -0.0005 5 6 4.3239 2.5199 -0.0011 6 6 4.2819 0.0208 -0.0005 7 6 3.5917 -1.1934 0.0005 8 6 4.3353 -2.4692 0.0011 9 7 3.7724 -3.6458 0.0016 10 6 4.7428 -4.6048 0.0027 11 6 4.5661 -5.9709 0.0039 12 6 3.2172 -6.5358 0.1177 13 6 2.0973 -5.6931 0.1031 14 6 0.8316 -6.2289 0.2108 15 6 0.6614 -7.5962 0.3342 16 6 1.7646 -8.4426 0.3500 17 8 1.5892 -9.7834 0.4708 18 6 2.6881 -10.5569 0.3611 19 1 3.6624 -10.1005 0.2667 20 6 2.5673 -11.9381 0.3696 21 7 1.3805 -12.4939 0.4852 22 14 4.0899 -13.0097 0.2183 23 1 5.0110 -12.7232 1.3473 24 1 3.6937 -14.4404 0.2529 25 1 4.7753 -12.7174 -1.0662 26 6 3.0425 -7.9183 0.2478 27 6 6.0220 -3.8687 0.0086 28 8 7.1443 -4.3377 0.0152 29 8 5.6789 -2.5625 0.0012 30 6 2.1951 -1.1954 -0.0058 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6534 2.1325 0.0004 35 1 4.5023 2.8360 -1.0289 36 1 3.7291 3.2747 0.5132 37 1 5.2777 2.3973 0.5120 38 1 5.3619 0.0295 -0.0005 39 1 5.4207 -6.6260 -0.0788 40 1 2.2257 -4.6251 0.0071 41 1 -0.0304 -5.5785 0.1998 42 1 -0.3333 -8.0084 0.4185 43 1 1.2961 -13.4602 0.4907 44 1 3.9004 -8.5741 0.2647 45 1 1.6551 -2.1307 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096130176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:49 Heat of formation + Delta-G solvation = 8.045297 kcal Electronic energy + Delta-G solvation = -30183.745265 eV Core-core repulsion = 25905.748237 eV Total energy + Delta-G solvation = -4277.997028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.91712 -39.81348 -39.20072 -38.03567 -36.97208 -35.31792 -33.92855 -33.39867 -32.41401 -31.85042 -29.38844 -28.63081 -27.71506 -27.06275 -25.99385 -25.33729 -23.38361 -22.35205 -21.84583 -21.07762 -20.81834 -19.88370 -18.12732 -17.30870 -17.16719 -17.07052 -16.63150 -16.00264 -15.92005 -15.34011 -15.17827 -14.69629 -14.46983 -14.45608 -14.08299 -13.79707 -13.74759 -13.55486 -13.44345 -13.33774 -13.32530 -12.87565 -12.77868 -12.62995 -12.37159 -12.30464 -11.98340 -11.76863 -11.73183 -11.66539 -11.41526 -11.36481 -10.99464 -10.98307 -10.77402 -10.51945 -9.82096 -9.72148 -9.55356 -9.00949 -8.95068 -8.84167 -7.75961 -7.34533 -6.53064 -4.13933 -0.38286 0.75136 0.99988 1.98521 2.20359 2.25913 2.31620 3.00658 3.09094 3.10905 3.12567 3.44619 3.60594 3.74564 3.89601 4.37434 4.42512 4.45125 4.68408 4.82122 4.87608 4.96639 4.98393 4.99788 5.10348 5.17170 5.19696 5.23455 5.28473 5.32833 5.44854 5.50023 5.59082 5.68161 5.74436 5.80572 5.82333 5.93607 6.01657 6.08192 6.15101 6.20464 6.29375 6.50985 6.55009 6.62631 6.94993 7.06672 7.10077 7.12493 7.23859 7.45752 7.59003 7.89012 8.91817 9.58219 10.64385 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002093 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.228084 B =13377.497184 C =15200.662567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.098 4.098 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.088 4.088 7 C -0.023 4.023 8 C 0.306 3.694 9 N -0.442 5.442 10 C -0.137 4.137 11 C 0.125 3.875 12 C -0.081 4.081 13 C -0.154 4.154 14 C -0.101 4.101 15 C -0.147 4.147 16 C 0.134 3.866 17 O -0.176 6.176 18 C -0.397 4.397 19 H 0.091 0.909 20 C 0.042 3.958 21 N -0.860 5.860 22 Si 0.940 3.060 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.186 4.186 27 C 0.485 3.515 28 O -0.436 6.436 29 O -0.292 6.292 30 C -0.069 4.069 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.272 0.728 44 H 0.135 0.865 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 26.833 -1.373 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.088 4.088 5 C -0.171 4.171 6 C -0.108 4.108 7 C -0.024 4.024 8 C 0.094 3.906 9 N -0.171 5.171 10 C -0.243 4.243 11 C 0.106 3.894 12 C -0.081 4.081 13 C -0.173 4.173 14 C -0.119 4.119 15 C -0.166 4.166 16 C 0.080 3.920 17 O -0.080 6.080 18 C -0.473 4.473 19 H 0.108 0.892 20 C -0.163 4.163 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.206 4.206 27 C 0.328 3.672 28 O -0.320 6.320 29 O -0.195 6.195 30 C -0.089 4.089 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.178 0.822 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.081 0.919 44 H 0.153 0.847 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.660 25.944 -1.314 25.985 hybrid contribution 1.747 -0.658 -0.070 1.868 sum 2.407 25.286 -1.384 25.438 Atomic orbital electron populations 1.20818 0.90330 1.03272 1.02774 1.19840 0.96569 0.92382 0.99766 1.21152 0.93456 0.97850 0.99242 1.19788 0.93754 0.95133 1.00115 1.20799 1.00117 0.93542 1.02623 1.21160 1.00385 0.90611 0.98634 1.17402 0.92184 0.86842 1.05988 1.23322 0.77362 0.94393 0.95518 1.70995 1.30140 0.97371 1.18596 1.21470 0.89219 0.94524 1.19114 1.22971 0.97752 0.90566 0.78118 1.18587 0.91290 0.93184 1.05042 1.22192 0.91199 1.01837 1.02063 1.20753 0.97005 0.93798 1.00330 1.20649 0.97652 0.92745 1.05559 1.19193 0.92506 0.85924 0.94342 1.84012 1.35244 1.10823 1.77898 1.21226 0.85440 0.87580 1.53028 0.89195 1.25280 0.98564 0.96112 0.96364 1.70022 1.22457 1.11661 1.45313 0.85792 0.79792 0.78676 0.79288 1.19419 1.20198 1.19424 1.21493 0.98180 0.93663 1.07240 1.21858 0.90686 0.80002 0.74647 1.90962 1.24672 1.70475 1.45891 1.84979 1.24714 1.31016 1.78773 1.21132 0.91714 0.98983 0.97060 0.90795 0.90907 0.91341 0.85536 0.90920 0.91299 0.91261 0.84941 0.83051 0.82239 0.86304 0.86023 0.91851 0.84747 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.09 -0.67 5.87 -104.68 -0.61 -1.28 16 3 C -0.10 -0.69 9.35 -39.48 -0.37 -1.06 16 4 C -0.09 -0.66 5.87 -104.68 -0.61 -1.27 16 5 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 6 C -0.09 -0.81 9.34 -39.16 -0.37 -1.18 16 7 C -0.02 -0.25 5.87 -104.98 -0.62 -0.87 16 8 C 0.31 4.08 7.78 -14.30 -0.11 3.97 16 9 N -0.44 -6.45 7.27 -7.85 -0.06 -6.51 16 10 C -0.14 -2.11 6.84 -82.19 -0.56 -2.68 16 11 C 0.12 1.92 10.02 -36.36 -0.36 1.56 16 12 C -0.08 -1.42 5.86 -105.12 -0.62 -2.04 16 13 C -0.15 -2.58 9.32 -39.00 -0.36 -2.95 16 14 C -0.10 -1.66 10.02 -39.68 -0.40 -2.06 16 15 C -0.15 -2.86 9.99 -39.24 -0.39 -3.25 16 16 C 0.13 3.03 6.64 -39.18 -0.26 2.77 16 17 O -0.18 -4.78 9.76 0.03 0.00 -4.78 16 18 C -0.40 -10.62 9.48 30.89 0.29 -10.33 16 19 H 0.09 2.20 5.20 -52.49 -0.27 1.92 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 21 N -0.86 -24.52 13.67 55.48 0.76 -23.76 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.19 -3.77 8.92 -38.84 -0.35 -4.11 16 27 C 0.48 7.70 8.88 34.54 0.31 8.00 16 28 O -0.44 -7.71 18.05 -18.83 -0.34 -8.05 16 29 O -0.29 -4.21 10.34 -21.51 -0.22 -4.43 16 30 C -0.07 -0.67 9.31 -39.16 -0.36 -1.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.13 1.13 7.83 -52.49 -0.41 0.72 16 39 H 0.15 2.00 8.06 -52.48 -0.42 1.57 16 40 H 0.16 2.46 4.68 -52.49 -0.25 2.21 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.66 5.63 -52.49 -0.30 2.37 16 45 H 0.14 1.37 7.76 -52.48 -0.41 0.96 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -31.38 395.09 -9.05 -40.43 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.98 Total: 3.50 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -5.13 Total: -17.32 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.70 Total: -30.27 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.56 Total: -17.26 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.38 -9.05 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096130176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.478 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds